Wall clock time and date at job start Tue Mar 31 2020 15:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46905 * 2 1 4 4 N 1.46496 * 109.47575 * 120.00374 * 2 1 3 5 5 C 1.35490 * 126.98137 * 299.97333 * 4 2 1 6 6 N 1.30516 * 107.31166 * 180.02562 * 5 4 2 7 7 N 1.28600 * 109.66834 * 359.97438 * 6 5 4 8 8 C 1.30513 * 109.67510 * 0.02562 * 7 6 5 9 9 C 1.50706 * 126.34914 * 179.72969 * 8 7 6 10 10 N 1.46897 * 109.46900 * 90.02417 * 9 8 7 11 11 C 1.46908 * 111.00192 * 293.95453 * 10 9 8 12 12 C 1.46899 * 111.00092 * 170.00353 * 10 9 8 13 13 C 1.50698 * 109.47287 * 190.00115 * 12 10 9 14 14 C 1.38303 * 119.92776 * 269.72531 * 13 12 10 15 15 C 1.38102 * 120.06600 * 179.72739 * 14 13 12 16 16 C 1.38879 * 119.92767 * 0.56509 * 15 14 13 17 17 O 1.35752 * 120.06360 * 179.68271 * 16 15 14 18 18 C 1.34835 * 116.99555 * 174.48812 * 17 16 15 19 19 H 1.07997 * 120.00250 * 5.06120 * 18 17 16 20 20 C 1.38655 * 119.99832 * 185.05513 * 18 17 16 21 21 N 1.31560 * 120.00165 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00048 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47181 * 59.99822 * 22 20 18 24 24 H 1.48492 * 109.47337 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47015 * 300.00476 * 22 20 18 26 26 C 1.38882 * 119.86555 * 359.71093 * 16 15 14 27 27 C 1.38091 * 119.92734 * 359.97438 * 26 16 15 28 28 H 1.08997 * 109.47805 * 59.99695 * 1 2 3 29 29 H 1.09008 * 109.46592 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46896 * 299.98879 * 1 2 3 31 31 H 1.09005 * 109.47063 * 240.00828 * 2 1 3 32 32 H 1.09000 * 109.47373 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47596 * 300.00441 * 3 2 1 34 34 H 1.09005 * 109.46584 * 60.00534 * 3 2 1 35 35 H 1.08007 * 126.34665 * 0.02562 * 5 4 2 36 36 H 1.08996 * 109.47210 * 210.02731 * 9 8 7 37 37 H 1.09003 * 109.46668 * 330.02392 * 9 8 7 38 38 H 1.09003 * 109.46509 * 60.00103 * 11 10 9 39 39 H 1.08992 * 109.46782 * 179.97438 * 11 10 9 40 40 H 1.08994 * 109.46580 * 300.00612 * 11 10 9 41 41 H 1.09004 * 109.47074 * 309.99885 * 12 10 9 42 42 H 1.09001 * 109.47154 * 69.99361 * 12 10 9 43 43 H 1.07996 * 119.96964 * 359.97438 * 14 13 12 44 44 H 1.08002 * 120.03436 * 180.27376 * 15 14 13 45 45 H 0.96998 * 119.99753 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03276 * 179.97438 * 26 16 15 47 47 H 1.08002 * 119.96489 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7804 -0.3531 2.4865 6 7 2.3975 -1.2252 3.2362 7 7 3.0031 -2.0829 2.4936 8 6 2.8002 -1.7966 1.2365 9 6 3.3404 -2.5523 0.0498 10 7 2.3882 -3.6017 -0.3372 11 6 2.2797 -4.6264 0.7098 12 6 2.7613 -4.2023 -1.6248 13 6 1.6438 -5.0909 -2.1073 14 6 1.6259 -6.4287 -1.7571 15 6 0.6003 -7.2444 -2.1929 16 6 -0.4075 -6.7225 -2.9934 17 8 -1.4136 -7.5232 -3.4287 18 6 -2.4183 -6.9308 -4.1052 19 1 -2.3590 -5.8806 -4.3499 20 6 -3.5275 -7.6700 -4.4869 21 7 -3.6000 -8.9492 -4.1886 22 14 -4.9191 -6.8494 -5.4248 23 1 -4.3982 -6.2987 -6.7018 24 1 -5.9793 -7.8487 -5.7120 25 1 -5.4862 -5.7482 -4.6057 26 6 -0.3836 -5.3799 -3.3481 27 6 0.6412 -4.5681 -2.9036 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5137 -0.8901 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9565 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.1894 0.4827 2.8309 36 1 3.4829 -1.8653 -0.7842 37 1 4.2954 -3.0072 0.3130 38 1 1.9344 -4.1652 1.6352 39 1 1.5681 -5.3907 0.3977 40 1 3.2557 -5.0832 0.8736 41 1 2.9394 -3.4134 -2.3557 42 1 3.6682 -4.7940 -1.5006 43 1 2.4127 -6.8351 -1.1388 44 1 0.5845 -8.2880 -1.9155 45 1 -4.3762 -9.4662 -4.4553 46 1 -1.1657 -4.9714 -3.9708 47 1 0.6602 -3.5239 -3.1788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292448031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:51 Heat of formation + Delta-G solvation = 84.602500 kcal Electronic energy + Delta-G solvation = -27855.635214 eV Core-core repulsion = 24041.024833 eV Total energy + Delta-G solvation = -3814.610381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.27756 -39.23379 -37.82476 -36.92865 -36.04783 -32.44440 -31.97062 -31.38591 -30.27307 -29.64897 -27.80651 -27.57041 -26.32874 -25.12457 -23.95933 -22.64734 -21.92144 -21.59589 -20.33138 -20.22403 -18.01267 -17.37534 -16.97146 -16.52593 -15.83315 -15.43543 -15.19892 -15.08208 -14.72902 -14.54419 -14.36385 -13.94061 -13.71939 -13.58551 -13.44566 -13.20687 -12.98163 -12.81271 -12.73085 -12.62424 -12.18053 -11.98143 -11.78695 -11.64190 -11.60761 -11.47154 -11.36319 -11.22634 -10.79627 -10.73512 -10.62668 -10.46174 -10.44678 -10.31860 -9.38729 -9.35575 -8.85386 -8.41385 -8.18168 -7.20511 -6.47297 -4.06279 1.63621 2.19190 2.23764 2.29453 2.77942 3.10586 3.11825 3.14878 3.89833 3.94556 4.06247 4.21129 4.35390 4.38337 4.54676 4.59910 4.75495 4.98270 5.04030 5.06305 5.08836 5.14641 5.23583 5.26251 5.31352 5.35699 5.40428 5.46000 5.62325 5.64549 5.69329 5.73927 5.80594 5.83305 5.87893 6.01221 6.18553 6.22824 6.39147 6.66608 6.70528 6.84135 6.93880 6.96909 7.05608 7.23147 7.37218 7.42107 7.80156 7.97543 8.64097 8.98136 9.68262 10.70632 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.002636 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.380234 B =10619.595705 C =11623.296427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.129 3.871 3 C -0.163 4.163 4 N -0.457 5.457 5 C 0.148 3.852 6 N -0.300 5.300 7 N -0.294 5.294 8 C 0.192 3.808 9 C 0.136 3.864 10 N -0.533 5.533 11 C 0.023 3.977 12 C 0.115 3.885 13 C -0.181 4.181 14 C -0.066 4.066 15 C -0.193 4.193 16 C 0.157 3.843 17 O -0.177 6.177 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.040 3.960 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.236 4.236 27 C -0.049 4.049 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.212 0.788 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.271 0.729 46 H 0.126 0.874 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.221 19.740 5.407 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 C -0.221 4.221 4 N -0.148 5.148 5 C -0.140 4.140 6 N -0.139 5.139 7 N -0.135 5.135 8 C -0.076 4.076 9 C 0.006 3.994 10 N -0.258 5.258 11 C -0.125 4.125 12 C -0.011 4.011 13 C -0.182 4.182 14 C -0.085 4.085 15 C -0.213 4.213 16 C 0.103 3.897 17 O -0.080 6.080 18 C -0.469 4.469 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.256 4.256 27 C -0.068 4.068 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.228 0.772 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.046 0.954 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.081 0.919 46 H 0.143 0.857 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.046 18.816 6.550 22.780 hybrid contribution -0.616 0.857 -1.454 1.797 sum 10.430 19.673 5.096 22.842 Atomic orbital electron populations 1.22162 0.92398 1.04202 1.03274 1.21563 0.96237 0.93550 0.86058 1.22207 1.02057 0.94178 1.03691 1.46421 1.37653 1.22528 1.08214 1.26203 1.04218 1.03225 0.80366 1.74242 1.10526 1.02476 1.26671 1.74253 1.20236 1.20191 0.98856 1.24642 0.96776 0.89295 0.96848 1.20375 0.94152 0.93658 0.91225 1.62080 1.47041 1.12980 1.03701 1.22468 1.00690 0.94875 0.94450 1.20815 0.94944 0.96182 0.89206 1.18978 0.99464 0.93734 1.06025 1.20500 0.96874 0.92944 0.98133 1.20186 0.96479 1.00284 1.04330 1.19397 0.89255 0.89736 0.91358 1.83981 1.27452 1.33911 1.62701 1.21275 0.96059 0.95727 1.33803 0.89122 1.25290 0.97889 0.95634 0.97669 1.70029 1.29789 1.06382 1.43506 0.85791 0.79575 0.78628 0.79495 1.19491 1.20258 1.19500 1.21135 1.02071 0.94327 1.08025 1.20506 0.92901 0.97801 0.95579 0.90108 0.90786 0.91869 0.87300 0.91777 0.89981 0.91606 0.77181 0.89271 0.91286 0.91434 0.90147 0.95440 0.90859 0.94404 0.87378 0.86607 0.91934 0.85679 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.26 37.16 0.34 -0.71 16 2 C 0.13 0.84 3.56 -67.93 -0.24 0.60 16 3 C -0.16 -0.72 9.25 37.16 0.34 -0.37 16 4 N -0.46 -4.37 2.60 -108.21 -0.28 -4.65 16 5 C 0.15 1.50 11.81 -89.95 -1.06 0.44 16 6 N -0.30 -4.24 12.21 29.69 0.36 -3.88 16 7 N -0.29 -4.32 11.50 32.80 0.38 -3.94 16 8 C 0.19 2.28 6.65 -154.99 -1.03 1.25 16 9 C 0.14 1.37 5.16 -4.97 -0.03 1.35 16 10 N -0.53 -6.50 4.74 -245.82 -1.17 -7.67 16 11 C 0.02 0.31 9.03 60.07 0.54 0.85 16 12 C 0.11 1.39 5.12 -4.98 -0.03 1.37 16 13 C -0.18 -2.88 4.89 -104.58 -0.51 -3.39 16 14 C -0.07 -1.13 7.90 -39.61 -0.31 -1.44 16 15 C -0.19 -4.01 9.99 -39.39 -0.39 -4.40 16 16 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 17 O -0.18 -5.02 9.76 0.03 0.00 -5.02 16 18 C -0.39 -10.85 9.49 30.89 0.29 -10.55 16 19 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.16 13.67 55.48 0.76 -24.41 16 22 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 C -0.24 -4.97 9.17 -39.40 -0.36 -5.33 16 27 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.06 0.36 7.97 -51.93 -0.41 -0.05 16 31 H 0.11 0.70 6.83 -51.93 -0.35 0.34 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.26 7.97 -51.93 -0.41 -0.15 16 35 H 0.21 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.09 0.68 6.99 -51.93 -0.36 0.32 16 37 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 38 H 0.07 1.01 6.74 -51.93 -0.35 0.66 16 39 H 0.08 1.21 5.91 -51.93 -0.31 0.90 16 40 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 42 H 0.04 0.43 8.06 -51.93 -0.42 0.01 16 43 H 0.11 1.58 8.00 -52.49 -0.42 1.16 16 44 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 45 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.13 2.64 5.64 -52.49 -0.30 2.35 16 47 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 386.99 15.07 5.83 5.83 Total: -1.00 -33.36 386.99 -9.28 -42.64 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.96 Total: 2.99 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -3.18 Total: -17.12 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.05 Total: -44.55 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: 0.00 Total: -5.02 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.36 -9.28 -42.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292448031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.240 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds