Wall clock time and date at job start Tue Mar 31 2020 15:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46905 * 2 1 4 4 N 1.46496 * 109.47575 * 120.00374 * 2 1 3 5 5 C 1.35490 * 126.98137 * 299.97333 * 4 2 1 6 6 N 1.30516 * 107.31166 * 180.02562 * 5 4 2 7 7 N 1.28600 * 109.66834 * 359.97438 * 6 5 4 8 8 C 1.30513 * 109.67510 * 0.02562 * 7 6 5 9 9 C 1.50706 * 126.34914 * 179.72969 * 8 7 6 10 10 N 1.46897 * 109.46900 * 90.02417 * 9 8 7 11 11 C 1.46908 * 111.00192 * 293.95453 * 10 9 8 12 12 C 1.46899 * 111.00092 * 170.00353 * 10 9 8 13 13 C 1.50698 * 109.47287 * 190.00115 * 12 10 9 14 14 C 1.38303 * 119.92776 * 269.72531 * 13 12 10 15 15 C 1.38102 * 120.06600 * 179.72739 * 14 13 12 16 16 C 1.38879 * 119.92767 * 0.56509 * 15 14 13 17 17 O 1.35752 * 120.06360 * 179.68271 * 16 15 14 18 18 C 1.34835 * 116.99555 * 174.48812 * 17 16 15 19 19 H 1.07997 * 120.00250 * 5.06120 * 18 17 16 20 20 C 1.38655 * 119.99832 * 185.05513 * 18 17 16 21 21 N 1.31560 * 120.00165 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00048 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47181 * 59.99822 * 22 20 18 24 24 H 1.48492 * 109.47337 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47015 * 300.00476 * 22 20 18 26 26 C 1.38882 * 119.86555 * 359.71093 * 16 15 14 27 27 C 1.38091 * 119.92734 * 359.97438 * 26 16 15 28 28 H 1.08997 * 109.47805 * 59.99695 * 1 2 3 29 29 H 1.09008 * 109.46592 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46896 * 299.98879 * 1 2 3 31 31 H 1.09005 * 109.47063 * 240.00828 * 2 1 3 32 32 H 1.09000 * 109.47373 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47596 * 300.00441 * 3 2 1 34 34 H 1.09005 * 109.46584 * 60.00534 * 3 2 1 35 35 H 1.08007 * 126.34665 * 0.02562 * 5 4 2 36 36 H 1.08996 * 109.47210 * 210.02731 * 9 8 7 37 37 H 1.09003 * 109.46668 * 330.02392 * 9 8 7 38 38 H 1.09003 * 109.46509 * 60.00103 * 11 10 9 39 39 H 1.08992 * 109.46782 * 179.97438 * 11 10 9 40 40 H 1.08994 * 109.46580 * 300.00612 * 11 10 9 41 41 H 1.09004 * 109.47074 * 309.99885 * 12 10 9 42 42 H 1.09001 * 109.47154 * 69.99361 * 12 10 9 43 43 H 1.07996 * 119.96964 * 359.97438 * 14 13 12 44 44 H 1.08002 * 120.03436 * 180.27376 * 15 14 13 45 45 H 0.96998 * 119.99753 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03276 * 179.97438 * 26 16 15 47 47 H 1.08002 * 119.96489 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7804 -0.3531 2.4865 6 7 2.3975 -1.2252 3.2362 7 7 3.0031 -2.0829 2.4936 8 6 2.8002 -1.7966 1.2365 9 6 3.3404 -2.5523 0.0498 10 7 2.3882 -3.6017 -0.3372 11 6 2.2797 -4.6264 0.7098 12 6 2.7613 -4.2023 -1.6248 13 6 1.6438 -5.0909 -2.1073 14 6 1.6259 -6.4287 -1.7571 15 6 0.6003 -7.2444 -2.1929 16 6 -0.4075 -6.7225 -2.9934 17 8 -1.4136 -7.5232 -3.4287 18 6 -2.4183 -6.9308 -4.1052 19 1 -2.3590 -5.8806 -4.3499 20 6 -3.5275 -7.6700 -4.4869 21 7 -3.6000 -8.9492 -4.1886 22 14 -4.9191 -6.8494 -5.4248 23 1 -4.3982 -6.2987 -6.7018 24 1 -5.9793 -7.8487 -5.7120 25 1 -5.4862 -5.7482 -4.6057 26 6 -0.3836 -5.3799 -3.3481 27 6 0.6412 -4.5681 -2.9036 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5137 -0.8901 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9565 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.1894 0.4827 2.8309 36 1 3.4829 -1.8653 -0.7842 37 1 4.2954 -3.0072 0.3130 38 1 1.9344 -4.1652 1.6352 39 1 1.5681 -5.3907 0.3977 40 1 3.2557 -5.0832 0.8736 41 1 2.9394 -3.4134 -2.3557 42 1 3.6682 -4.7940 -1.5006 43 1 2.4127 -6.8351 -1.1388 44 1 0.5845 -8.2880 -1.9155 45 1 -4.3762 -9.4662 -4.4553 46 1 -1.1657 -4.9714 -3.9708 47 1 0.6602 -3.5239 -3.1788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292448031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:50 Heat of formation + Delta-G solvation = 64.351702 kcal Electronic energy + Delta-G solvation = -27856.513355 eV Core-core repulsion = 24041.024833 eV Total energy + Delta-G solvation = -3815.488521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.09480 -40.83163 -39.16507 -37.61767 -37.39889 -34.32392 -32.91487 -32.21382 -31.81352 -30.94759 -28.55990 -28.19592 -27.80581 -26.76779 -24.68053 -23.82608 -23.47255 -22.38165 -21.70266 -20.98539 -19.83094 -18.81147 -18.01624 -17.38973 -16.70667 -16.61143 -16.36271 -16.21022 -16.03936 -15.63084 -15.49256 -15.43482 -15.13771 -14.81839 -14.34715 -14.23636 -14.10026 -13.93633 -13.69523 -13.56497 -13.17575 -13.11096 -12.93172 -12.73669 -12.65116 -12.46295 -12.40513 -12.29965 -12.18890 -12.11366 -12.03045 -11.98884 -11.29929 -11.14755 -11.03729 -10.77916 -10.28297 -9.72994 -9.37474 -8.87421 -8.46206 -6.14460 0.62544 0.66816 0.91611 1.34964 1.45909 1.51592 1.60884 1.88624 2.18486 2.76313 3.03648 3.29094 3.41424 3.54722 3.58214 3.72742 3.93882 3.96681 4.04587 4.09232 4.13507 4.23173 4.33452 4.42962 4.53869 4.54481 4.61562 4.63129 4.66811 4.72834 4.80829 4.82796 4.84995 4.85360 5.02825 5.09247 5.11681 5.16834 5.19379 5.26072 5.32298 5.33359 5.58699 5.74000 5.80363 5.96813 5.99197 6.04458 6.08757 6.27456 6.98547 7.78183 7.80654 8.77123 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.002636 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.380234 B =10619.595705 C =11623.296427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.126 3.874 3 C -0.157 4.157 4 N -0.453 5.453 5 C 0.159 3.841 6 N -0.349 5.349 7 N -0.336 5.336 8 C 0.187 3.813 9 C 0.140 3.860 10 N -0.539 5.539 11 C 0.031 3.969 12 C 0.117 3.883 13 C -0.153 4.153 14 C -0.059 4.059 15 C -0.209 4.209 16 C 0.113 3.887 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.103 0.897 20 C -0.025 4.025 21 N -0.923 5.923 22 Si 1.018 2.982 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.257 1.257 26 C -0.244 4.244 27 C -0.045 4.045 28 H 0.099 0.901 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.247 0.753 36 H 0.123 0.877 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.038 0.962 41 H 0.107 0.893 42 H 0.056 0.944 43 H 0.139 0.861 44 H 0.106 0.894 45 H 0.272 0.728 46 H 0.118 0.882 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.869 23.971 4.632 27.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 C -0.215 4.215 4 N -0.143 5.143 5 C -0.129 4.129 6 N -0.188 5.188 7 N -0.177 5.177 8 C -0.083 4.083 9 C 0.010 3.990 10 N -0.264 5.264 11 C -0.118 4.118 12 C -0.009 4.009 13 C -0.154 4.154 14 C -0.078 4.078 15 C -0.229 4.229 16 C 0.063 3.937 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.120 0.880 20 C -0.222 4.222 21 N -0.562 5.562 22 Si 0.837 3.163 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.182 1.182 26 C -0.264 4.264 27 C -0.063 4.063 28 H 0.117 0.883 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.262 0.738 36 H 0.141 0.859 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.125 0.875 42 H 0.074 0.926 43 H 0.157 0.843 44 H 0.125 0.875 45 H 0.081 0.919 46 H 0.136 0.864 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.752 23.094 5.788 27.008 hybrid contribution -0.825 -0.257 -1.031 1.345 sum 11.927 22.836 4.757 26.199 Atomic orbital electron populations 1.22146 0.92419 1.02516 1.04636 1.21841 0.96122 0.94678 0.84944 1.22183 1.01771 0.92626 1.04902 1.46652 1.36837 1.21941 1.08901 1.26839 1.02816 1.02864 0.80408 1.74142 1.12469 1.03962 1.28189 1.74143 1.21783 1.21426 1.00343 1.24918 0.96876 0.89915 0.96560 1.20499 0.93413 0.93314 0.91742 1.61939 1.48385 1.12852 1.03220 1.22309 1.00629 0.94668 0.94176 1.20882 0.93428 0.96817 0.89780 1.19531 0.99305 0.93649 1.02886 1.20870 0.96191 0.93355 0.97348 1.20415 0.97187 1.00690 1.04586 1.19953 0.89425 0.91130 0.93173 1.83945 1.29165 1.35835 1.65272 1.21796 0.96604 0.96486 1.34008 0.87977 1.26611 1.00627 0.96243 0.98692 1.70188 1.31092 1.08439 1.46456 0.84657 0.75589 0.77695 0.78344 1.17875 1.19817 1.18163 1.21264 1.03243 0.93651 1.08205 1.20914 0.91545 0.99175 0.94663 0.88251 0.93842 0.91143 0.86612 0.92131 0.88109 0.91112 0.73754 0.85911 0.90724 0.93279 0.92055 0.94311 0.87463 0.92576 0.84328 0.87535 0.91906 0.86434 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.26 71.98 0.67 -0.90 16 2 C 0.13 1.16 3.56 44.99 0.16 1.32 16 3 C -0.16 -0.72 9.25 71.98 0.67 -0.06 16 4 N -0.45 -7.42 2.60 -496.28 -1.29 -8.71 16 5 C 0.16 2.93 11.81 180.11 2.13 5.05 16 6 N -0.35 -9.63 12.21 -59.99 -0.73 -10.36 16 7 N -0.34 -9.60 11.50 -50.15 -0.58 -10.18 16 8 C 0.19 3.99 6.65 137.98 0.92 4.91 16 9 C 0.14 2.26 5.16 85.56 0.44 2.70 16 10 N -0.54 -11.05 4.74 -931.64 -4.42 -15.47 16 11 C 0.03 0.76 9.03 127.69 1.15 1.92 16 12 C 0.12 2.22 5.12 85.56 0.44 2.65 16 13 C -0.15 -4.32 4.89 -19.83 -0.10 -4.42 16 14 C -0.06 -1.92 7.90 22.25 0.18 -1.74 16 15 C -0.21 -8.92 9.99 22.39 0.22 -8.70 16 16 C 0.11 5.62 6.65 22.58 0.15 5.77 16 17 O -0.24 -14.26 9.76 -22.82 -0.22 -14.48 16 18 C -0.41 -24.03 9.49 67.92 0.64 -23.38 16 19 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 20 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 21 N -0.92 -57.16 13.67 21.61 0.30 -56.86 16 22 Si 1.02 42.56 29.55 68.60 2.03 44.59 16 23 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 26 C -0.24 -10.27 9.17 22.39 0.21 -10.07 16 27 C -0.04 -1.41 9.69 22.25 0.22 -1.19 16 28 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.07 0.58 7.97 -2.39 -0.02 0.56 16 31 H 0.12 0.93 6.83 -2.38 -0.02 0.91 16 32 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.07 0.28 7.97 -2.38 -0.02 0.26 16 35 H 0.25 2.29 8.06 -2.91 -0.02 2.26 16 36 H 0.12 1.16 6.99 -2.39 -0.02 1.15 16 37 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 38 H 0.05 1.42 6.74 -2.39 -0.02 1.41 16 39 H 0.06 1.74 5.91 -2.39 -0.01 1.73 16 40 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.11 1.45 7.87 -2.39 -0.02 1.43 16 42 H 0.06 0.95 8.06 -2.39 -0.02 0.93 16 43 H 0.14 3.65 8.00 -2.91 -0.02 3.63 16 44 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 45 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 46 H 0.12 5.03 5.64 -2.91 -0.02 5.01 16 47 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -80.96 386.99 4.60 -76.36 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.97 Total: 22.20 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 8.55 Total: -27.08 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -6.73 Total: -101.58 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.22 Total: -14.48 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -80.96 4.60 -76.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292448031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.707 kcal (2) G-P(sol) polarization free energy of solvation -80.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds