Wall clock time and date at job start Tue Mar 31 2020 15:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99420 * 2 1 4 4 N 1.46508 * 109.46892 * 125.00464 * 3 2 1 5 5 C 1.46503 * 119.99772 * 264.86593 * 4 3 2 6 6 C 1.50700 * 109.47112 * 275.58636 * 5 4 3 7 7 H 1.07999 * 119.99853 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99844 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99958 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00192 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.46815 * 90.00188 * 10 8 6 12 12 H 1.48502 * 109.46887 * 209.99845 * 10 8 6 13 13 H 1.48495 * 109.47310 * 329.99987 * 10 8 6 14 14 C 1.34772 * 119.99874 * 84.86879 * 4 3 2 15 15 O 1.21279 * 120.00429 * 4.97704 * 14 4 3 16 16 C 1.50701 * 119.99881 * 184.98403 * 14 4 3 17 17 C 1.53119 * 109.52379 * 186.52873 * 16 14 4 18 18 C 1.53039 * 109.27797 * 182.44077 * 17 16 14 19 19 N 1.46846 * 109.52497 * 59.17636 * 18 17 16 20 20 C 1.39001 * 111.00156 * 174.15798 * 19 18 17 21 21 C 1.39343 * 120.09408 * 179.97438 * 20 19 18 22 22 N 1.31920 * 119.88581 * 179.79130 * 21 20 19 23 23 C 1.32277 * 120.08684 * 0.48979 * 22 21 20 24 24 C 1.38157 * 120.19443 * 359.49337 * 23 22 21 25 25 N 1.32256 * 120.10802 * 0.27036 * 24 23 22 26 26 C 1.46849 * 111.20068 * 298.26074 * 19 18 17 27 27 C 1.53032 * 109.52337 * 61.74196 * 26 19 18 28 28 H 1.08003 * 119.99902 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00060 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.00339 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47537 * 5.00598 * 3 2 1 32 32 H 1.09002 * 109.46938 * 244.99764 * 3 2 1 33 33 H 1.08999 * 109.46963 * 35.58405 * 5 4 3 34 34 H 1.09001 * 109.47008 * 155.58950 * 5 4 3 35 35 H 0.97001 * 120.00079 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.57201 * 306.69215 * 16 14 4 37 37 H 1.08995 * 109.50199 * 62.50053 * 17 16 14 38 38 H 1.08995 * 109.50339 * 302.37668 * 17 16 14 39 39 H 1.09003 * 109.46470 * 299.16746 * 18 17 16 40 40 H 1.08999 * 109.46467 * 179.19311 * 18 17 16 41 41 H 1.07992 * 120.05441 * 0.03182 * 21 20 19 42 42 H 1.08000 * 119.90038 * 179.76422 * 23 22 21 43 43 H 1.07994 * 119.94730 * 180.25653 * 24 23 22 44 44 H 1.08998 * 109.46198 * 181.75544 * 26 19 18 45 45 H 1.08993 * 109.46086 * 301.72084 * 26 19 18 46 46 H 1.09000 * 109.50463 * 180.88173 * 27 26 19 47 47 H 1.09005 * 109.50871 * 60.75778 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5971 1.9664 2.3910 6 6 2.8585 3.4484 2.3111 7 1 3.2777 3.8751 1.4119 8 6 2.5624 4.2595 3.3860 9 7 2.7910 5.5528 3.3165 10 14 1.8381 3.5213 4.9416 11 1 2.9363 3.1261 5.8598 12 1 0.9720 4.5260 5.6093 13 1 1.0303 2.3253 4.5923 14 6 4.2144 0.7731 1.0135 15 8 4.5772 0.3284 -0.0550 16 6 5.1287 0.7005 2.2093 17 6 6.4996 0.1753 1.7742 18 6 7.4041 0.0462 3.0019 19 7 6.7915 -0.8744 3.9682 20 6 7.6469 -1.1167 5.0367 21 6 7.2531 -1.9669 6.0680 22 7 8.0698 -2.1972 7.0781 23 6 9.2568 -1.6148 7.1172 24 6 9.6509 -0.7714 6.0964 25 7 8.8401 -0.5387 5.0777 26 6 5.4952 -0.3675 4.4362 27 6 4.5337 -0.2508 3.2514 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3585 2.1317 0.0897 32 1 2.6212 1.4027 -0.9314 33 1 1.5353 1.7936 2.5662 34 1 3.1749 1.5392 3.2107 35 1 2.5831 6.1234 4.0728 36 1 5.2403 1.6936 2.6444 37 1 6.9470 0.8707 1.0641 38 1 6.3828 -0.8010 1.3040 39 1 7.5316 1.0253 3.4637 40 1 8.3765 -0.3411 2.6975 41 1 6.2825 -2.4395 6.0385 42 1 9.9215 -1.8025 7.9475 43 1 10.6225 -0.3012 6.1304 44 1 5.0811 -1.0553 5.1735 45 1 5.6316 0.6134 4.8912 46 1 3.5766 0.1402 3.5965 47 1 4.3860 -1.2339 2.8042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293679692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:49 Heat of formation + Delta-G solvation = 52.997916 kcal Electronic energy + Delta-G solvation = -28823.853523 eV Core-core repulsion = 25007.872665 eV Total energy + Delta-G solvation = -3815.980858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45974 -39.92598 -38.27139 -35.65544 -34.67574 -33.82875 -33.17934 -32.26020 -30.94163 -30.16537 -28.20323 -26.59686 -25.22978 -24.70751 -23.09278 -22.75436 -22.29868 -20.24573 -19.68778 -18.38684 -17.69053 -17.58557 -17.08377 -16.83012 -16.39683 -15.84272 -15.46251 -14.94815 -14.73222 -14.53946 -14.43604 -14.35005 -13.84989 -13.63165 -13.30593 -12.99102 -12.90093 -12.63053 -12.47619 -12.30823 -11.95609 -11.66115 -11.56824 -11.43638 -11.35869 -11.13660 -11.04853 -10.97096 -10.68319 -10.55290 -10.40633 -10.26289 -10.10917 -9.67937 -9.31089 -9.25643 -8.96077 -8.76494 -8.36937 -7.82772 -6.27968 -4.29669 0.64616 0.99053 2.45892 3.09313 3.17860 3.19360 3.20374 3.25275 3.58604 3.86401 4.10129 4.13924 4.19291 4.38020 4.72140 4.82405 4.92186 4.95488 5.02098 5.10114 5.18434 5.27058 5.30950 5.35670 5.41178 5.47876 5.62865 5.68754 5.72937 5.84771 5.87067 5.93758 5.98965 6.10329 6.15892 6.26580 6.31009 6.42331 6.52725 6.56635 6.65219 6.83608 6.86283 6.93644 7.21670 7.29987 7.39136 7.65470 8.05781 8.35844 8.76042 8.86281 9.31034 10.84753 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.003857 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.653436 B = 7256.880762 C = 8517.165928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.155 4.155 3 C 0.143 3.857 4 N -0.586 5.586 5 C 0.200 3.800 6 C -0.543 4.543 7 H 0.078 0.922 8 C 0.077 3.923 9 N -0.889 5.889 10 Si 0.866 3.134 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.262 1.262 14 C 0.526 3.474 15 O -0.566 6.566 16 C -0.110 4.110 17 C -0.096 4.096 18 C 0.066 3.934 19 N -0.469 5.469 20 C 0.274 3.726 21 C 0.037 3.963 22 N -0.420 5.420 23 C 0.003 3.997 24 C 0.082 3.918 25 N -0.478 5.478 26 C 0.060 3.940 27 C -0.114 4.114 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.032 0.968 34 H 0.042 0.958 35 H 0.267 0.733 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.168 0.832 44 H 0.087 0.913 45 H 0.056 0.944 46 H 0.093 0.907 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.681 -13.230 4.923 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.175 4.175 3 C 0.021 3.979 4 N -0.315 5.315 5 C 0.079 3.921 6 C -0.581 4.581 7 H 0.096 0.904 8 C -0.126 4.126 9 N -0.527 5.527 10 Si 0.692 3.308 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.187 1.187 14 C 0.314 3.686 15 O -0.446 6.446 16 C -0.131 4.131 17 C -0.134 4.134 18 C -0.060 4.060 19 N -0.186 5.186 20 C 0.039 3.961 21 C -0.129 4.129 22 N -0.134 5.134 23 C -0.156 4.156 24 C -0.079 4.079 25 N -0.199 5.199 26 C -0.066 4.066 27 C -0.152 4.152 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.186 0.814 42 H 0.183 0.817 43 H 0.185 0.815 44 H 0.105 0.895 45 H 0.074 0.926 46 H 0.111 0.889 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.707 -13.671 4.189 15.793 hybrid contribution -0.261 0.561 1.292 1.432 sum 6.446 -13.110 5.481 15.604 Atomic orbital electron populations 1.23793 0.95792 1.01599 1.01971 1.23406 0.96055 0.99363 0.98626 1.20423 0.92258 0.94728 0.90541 1.47879 1.13599 1.55109 1.14908 1.20068 0.96330 0.94142 0.81567 1.21391 1.43869 0.89985 1.02847 0.90357 1.24864 0.94822 0.94651 0.98290 1.69888 1.47308 1.03857 1.31627 0.87004 0.80034 0.79813 0.83939 1.19828 1.20755 1.18651 1.20318 0.81818 0.77062 0.89418 1.90601 1.74961 1.49784 1.29240 1.21357 0.94880 1.01897 0.94992 1.21454 0.93054 1.02799 0.96142 1.22101 0.97901 0.94311 0.91708 1.59084 1.03632 1.45599 1.10262 1.20994 0.91438 0.93127 0.90581 1.23297 1.01018 0.98126 0.90452 1.68336 1.03174 1.19118 1.22733 1.23505 0.94548 0.97215 1.00293 1.23597 0.99366 0.95310 0.89602 1.68451 1.04474 1.21450 1.25504 1.22346 0.86688 0.99623 0.97899 1.21823 0.98579 1.00341 0.94468 0.88883 0.88392 0.87780 0.89507 0.90087 0.95023 0.94056 0.92318 0.87441 0.90311 0.90384 0.92720 0.89434 0.81351 0.81654 0.81482 0.89485 0.92592 0.88890 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.60 14.32 29.01 0.42 -2.18 16 2 C -0.16 -2.40 9.81 -36.03 -0.35 -2.75 16 3 C 0.14 2.56 5.86 -5.19 -0.03 2.53 16 4 N -0.59 -11.46 2.45 -176.43 -0.43 -11.89 16 5 C 0.20 4.18 3.70 -5.19 -0.02 4.16 16 6 C -0.54 -13.86 9.93 -34.44 -0.34 -14.20 16 7 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 8 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 9 N -0.89 -25.36 13.96 55.43 0.77 -24.58 16 10 Si 0.87 19.07 27.47 -169.99 -4.67 14.40 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 14 C 0.53 10.14 6.93 -10.99 -0.08 10.06 16 15 O -0.57 -12.02 15.58 5.56 0.09 -11.93 16 16 C -0.11 -1.81 1.74 -91.64 -0.16 -1.97 16 17 C -0.10 -1.43 4.74 -26.65 -0.13 -1.56 16 18 C 0.07 0.90 4.66 -3.83 -0.02 0.88 16 19 N -0.47 -6.04 4.68 -173.10 -0.81 -6.85 16 20 C 0.27 3.48 6.40 -154.73 -0.99 2.49 16 21 C 0.04 0.43 10.34 -17.10 -0.18 0.25 16 22 N -0.42 -4.89 10.49 -12.88 -0.14 -5.02 16 23 C 0.00 0.03 11.21 -17.39 -0.19 -0.16 16 24 C 0.08 0.79 11.21 -17.40 -0.20 0.60 16 25 N -0.48 -6.02 8.87 -12.24 -0.11 -6.13 16 26 C 0.06 0.74 5.25 -3.84 -0.02 0.72 16 27 C -0.11 -1.60 5.00 -26.65 -0.13 -1.73 16 28 H 0.09 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 30 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.09 1.56 7.68 -51.93 -0.40 1.16 16 32 H 0.08 1.49 7.51 -51.93 -0.39 1.10 16 33 H 0.03 0.67 7.17 -51.93 -0.37 0.29 16 34 H 0.04 0.81 3.39 -51.93 -0.18 0.64 16 35 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.11 1.95 7.67 -51.93 -0.40 1.55 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.20 7.96 -51.93 -0.41 0.79 16 39 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 40 H 0.09 1.16 7.72 -51.93 -0.40 0.76 16 41 H 0.17 1.62 7.15 -52.49 -0.38 1.24 16 42 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.09 0.89 6.69 -51.93 -0.35 0.54 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.34 5.41 -51.93 -0.28 1.06 16 47 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -30.81 378.18 -9.05 -39.86 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.94 Total: 7.37 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.52 Total: -0.92 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.71 Total: -54.48 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.67 Total: 14.40 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.81 -9.05 -39.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293679692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.855 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds