Wall clock time and date at job start Tue Mar 31 2020 15:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99420 * 2 1 4 4 N 1.46508 * 109.46892 * 125.00464 * 3 2 1 5 5 C 1.46503 * 119.99772 * 264.86593 * 4 3 2 6 6 C 1.50700 * 109.47112 * 275.58636 * 5 4 3 7 7 H 1.07999 * 119.99853 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99844 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99958 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00192 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.46815 * 90.00188 * 10 8 6 12 12 H 1.48502 * 109.46887 * 209.99845 * 10 8 6 13 13 H 1.48495 * 109.47310 * 329.99987 * 10 8 6 14 14 C 1.34772 * 119.99874 * 84.86879 * 4 3 2 15 15 O 1.21279 * 120.00429 * 4.97704 * 14 4 3 16 16 C 1.50701 * 119.99881 * 184.98403 * 14 4 3 17 17 C 1.53119 * 109.52379 * 186.52873 * 16 14 4 18 18 C 1.53039 * 109.27797 * 182.44077 * 17 16 14 19 19 N 1.46846 * 109.52497 * 59.17636 * 18 17 16 20 20 C 1.39001 * 111.00156 * 174.15798 * 19 18 17 21 21 C 1.39343 * 120.09408 * 179.97438 * 20 19 18 22 22 N 1.31920 * 119.88581 * 179.79130 * 21 20 19 23 23 C 1.32277 * 120.08684 * 0.48979 * 22 21 20 24 24 C 1.38157 * 120.19443 * 359.49337 * 23 22 21 25 25 N 1.32256 * 120.10802 * 0.27036 * 24 23 22 26 26 C 1.46849 * 111.20068 * 298.26074 * 19 18 17 27 27 C 1.53032 * 109.52337 * 61.74196 * 26 19 18 28 28 H 1.08003 * 119.99902 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00060 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.00339 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47537 * 5.00598 * 3 2 1 32 32 H 1.09002 * 109.46938 * 244.99764 * 3 2 1 33 33 H 1.08999 * 109.46963 * 35.58405 * 5 4 3 34 34 H 1.09001 * 109.47008 * 155.58950 * 5 4 3 35 35 H 0.97001 * 120.00079 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.57201 * 306.69215 * 16 14 4 37 37 H 1.08995 * 109.50199 * 62.50053 * 17 16 14 38 38 H 1.08995 * 109.50339 * 302.37668 * 17 16 14 39 39 H 1.09003 * 109.46470 * 299.16746 * 18 17 16 40 40 H 1.08999 * 109.46467 * 179.19311 * 18 17 16 41 41 H 1.07992 * 120.05441 * 0.03182 * 21 20 19 42 42 H 1.08000 * 119.90038 * 179.76422 * 23 22 21 43 43 H 1.07994 * 119.94730 * 180.25653 * 24 23 22 44 44 H 1.08998 * 109.46198 * 181.75544 * 26 19 18 45 45 H 1.08993 * 109.46086 * 301.72084 * 26 19 18 46 46 H 1.09000 * 109.50463 * 180.88173 * 27 26 19 47 47 H 1.09005 * 109.50871 * 60.75778 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5971 1.9664 2.3910 6 6 2.8585 3.4484 2.3111 7 1 3.2777 3.8751 1.4119 8 6 2.5624 4.2595 3.3860 9 7 2.7910 5.5528 3.3165 10 14 1.8381 3.5213 4.9416 11 1 2.9363 3.1261 5.8598 12 1 0.9720 4.5260 5.6093 13 1 1.0303 2.3253 4.5923 14 6 4.2144 0.7731 1.0135 15 8 4.5772 0.3284 -0.0550 16 6 5.1287 0.7005 2.2093 17 6 6.4996 0.1753 1.7742 18 6 7.4041 0.0462 3.0019 19 7 6.7915 -0.8744 3.9682 20 6 7.6469 -1.1167 5.0367 21 6 7.2531 -1.9669 6.0680 22 7 8.0698 -2.1972 7.0781 23 6 9.2568 -1.6148 7.1172 24 6 9.6509 -0.7714 6.0964 25 7 8.8401 -0.5387 5.0777 26 6 5.4952 -0.3675 4.4362 27 6 4.5337 -0.2508 3.2514 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3585 2.1317 0.0897 32 1 2.6212 1.4027 -0.9314 33 1 1.5353 1.7936 2.5662 34 1 3.1749 1.5392 3.2107 35 1 2.5831 6.1234 4.0728 36 1 5.2403 1.6936 2.6444 37 1 6.9470 0.8707 1.0641 38 1 6.3828 -0.8010 1.3040 39 1 7.5316 1.0253 3.4637 40 1 8.3765 -0.3411 2.6975 41 1 6.2825 -2.4395 6.0385 42 1 9.9215 -1.8025 7.9475 43 1 10.6225 -0.3012 6.1304 44 1 5.0811 -1.0553 5.1735 45 1 5.6316 0.6134 4.8912 46 1 3.5766 0.1402 3.5965 47 1 4.3860 -1.2339 2.8042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293679692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:48 Heat of formation + Delta-G solvation = 33.646586 kcal Electronic energy + Delta-G solvation = -28824.692660 eV Core-core repulsion = 25007.872665 eV Total energy + Delta-G solvation = -3816.819995 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.33830 -41.29670 -39.42062 -37.20470 -35.75755 -35.06514 -34.52923 -33.87671 -32.05417 -31.07048 -30.00516 -27.87326 -26.26013 -25.77504 -24.58821 -23.78249 -23.60634 -21.45787 -20.90225 -19.79717 -19.06993 -18.65696 -18.45840 -17.94182 -17.58380 -17.31351 -16.52603 -16.21253 -16.05939 -15.84471 -15.61372 -15.52863 -14.93537 -14.82979 -14.67195 -14.43755 -14.13096 -13.92351 -13.78450 -13.58209 -13.24933 -13.13329 -12.81631 -12.71627 -12.55899 -12.39130 -12.33421 -12.25279 -12.11742 -11.93214 -11.78516 -11.71342 -11.48774 -11.03698 -10.81723 -10.69309 -10.25940 -10.07235 -9.46215 -9.26713 -8.31405 -6.39160 -0.13948 0.17093 1.27927 1.37560 1.40953 1.49992 1.70638 2.29275 2.33006 2.39558 2.77724 3.02699 3.28940 3.41826 3.47587 3.56092 3.71725 3.75637 4.03663 4.08535 4.15076 4.21222 4.24995 4.31200 4.31250 4.44246 4.50824 4.51665 4.57457 4.61363 4.69412 4.76515 4.78641 4.81422 4.86171 4.97881 5.05137 5.14767 5.23910 5.32111 5.44805 5.54314 5.60091 5.68432 5.90057 5.92604 6.15810 6.40608 6.61101 6.67990 6.85303 7.21255 7.32935 8.85168 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.003857 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.653436 B = 7256.880762 C = 8517.165928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.176 4.176 3 C 0.140 3.860 4 N -0.591 5.591 5 C 0.211 3.789 6 C -0.545 4.545 7 H 0.025 0.975 8 C 0.020 3.980 9 N -0.944 5.944 10 Si 0.934 3.066 11 H -0.258 1.258 12 H -0.287 1.287 13 H -0.231 1.231 14 C 0.520 3.480 15 O -0.589 6.589 16 C -0.107 4.107 17 C -0.087 4.087 18 C 0.080 3.920 19 N -0.469 5.469 20 C 0.253 3.747 21 C 0.033 3.967 22 N -0.439 5.439 23 C 0.012 3.988 24 C 0.078 3.922 25 N -0.504 5.504 26 C 0.063 3.937 27 C -0.106 4.106 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.268 0.732 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.042 0.958 40 H 0.090 0.910 41 H 0.185 0.815 42 H 0.201 0.799 43 H 0.200 0.800 44 H 0.117 0.883 45 H 0.044 0.956 46 H 0.093 0.907 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.195 -15.936 7.521 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.195 4.195 3 C 0.018 3.982 4 N -0.320 5.320 5 C 0.089 3.911 6 C -0.583 4.583 7 H 0.044 0.956 8 C -0.179 4.179 9 N -0.583 5.583 10 Si 0.756 3.244 11 H -0.182 1.182 12 H -0.213 1.213 13 H -0.154 1.154 14 C 0.309 3.691 15 O -0.471 6.471 16 C -0.128 4.128 17 C -0.125 4.125 18 C -0.047 4.047 19 N -0.187 5.187 20 C 0.019 3.981 21 C -0.131 4.131 22 N -0.153 5.153 23 C -0.147 4.147 24 C -0.082 4.082 25 N -0.224 5.224 26 C -0.063 4.063 27 C -0.144 4.144 28 H 0.139 0.861 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.108 0.892 41 H 0.202 0.798 42 H 0.218 0.782 43 H 0.217 0.783 44 H 0.135 0.865 45 H 0.062 0.938 46 H 0.111 0.889 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.207 -16.409 6.767 18.804 hybrid contribution -0.013 1.477 0.408 1.533 sum 6.194 -14.932 7.175 17.686 Atomic orbital electron populations 1.24045 0.94913 1.03120 0.98167 1.23129 0.96651 0.97653 1.02078 1.20468 0.91966 0.96345 0.89418 1.47960 1.14195 1.54831 1.14977 1.19906 0.97148 0.91133 0.82885 1.21561 1.43113 0.92673 1.00966 0.95623 1.25801 0.95122 0.94762 1.02234 1.70064 1.49349 1.05882 1.33039 0.85911 0.79774 0.79788 0.78943 1.18212 1.21285 1.15379 1.20838 0.81863 0.76430 0.89957 1.90578 1.75311 1.50878 1.30347 1.21354 0.95240 1.01705 0.94536 1.21346 0.92512 1.02027 0.96659 1.21877 0.97587 0.94062 0.91221 1.59101 1.03819 1.45192 1.10590 1.21045 0.91727 0.94234 0.91105 1.23503 1.01766 0.97839 0.90041 1.68404 1.04148 1.19894 1.22901 1.24122 0.94104 0.95666 1.00823 1.24180 1.00142 0.95134 0.88752 1.68421 1.04930 1.22175 1.26905 1.22358 0.86440 0.99920 0.97539 1.21762 0.98669 0.99805 0.94171 0.86073 0.87977 0.87870 0.90208 0.91685 0.93915 0.91852 0.92309 0.89504 0.91546 0.90716 0.93946 0.89210 0.79801 0.78194 0.78313 0.86523 0.93796 0.88923 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 14.32 67.78 0.97 -3.01 16 2 C -0.18 -5.25 9.81 25.65 0.25 -5.00 16 3 C 0.14 5.14 5.86 85.63 0.50 5.64 16 4 N -0.59 -23.51 2.45 -830.48 -2.04 -25.55 16 5 C 0.21 8.73 3.70 85.63 0.32 9.05 16 6 C -0.54 -28.72 9.93 25.60 0.25 -28.46 16 7 H 0.03 1.58 8.06 -2.91 -0.02 1.55 16 8 C 0.02 1.04 5.47 84.65 0.46 1.51 16 9 N -0.94 -55.71 13.96 21.45 0.30 -55.41 16 10 Si 0.93 38.35 27.47 68.60 1.88 40.23 16 11 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 12 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.23 -8.30 6.54 99.48 0.65 -7.65 16 14 C 0.52 20.55 6.93 87.66 0.61 21.15 16 15 O -0.59 -25.83 15.58 -3.03 -0.05 -25.87 16 16 C -0.11 -3.57 1.74 -11.46 -0.02 -3.59 16 17 C -0.09 -2.65 4.74 30.65 0.15 -2.51 16 18 C 0.08 2.15 4.66 86.33 0.40 2.55 16 19 N -0.47 -11.56 4.68 -701.56 -3.29 -14.84 16 20 C 0.25 6.03 6.40 133.04 0.85 6.88 16 21 C 0.03 0.68 10.34 84.95 0.88 1.56 16 22 N -0.44 -9.08 10.49 -194.67 -2.04 -11.12 16 23 C 0.01 0.19 11.21 84.61 0.95 1.14 16 24 C 0.08 1.31 11.21 84.61 0.95 2.26 16 25 N -0.50 -11.93 8.87 -192.64 -1.71 -13.64 16 26 C 0.06 1.45 5.25 86.32 0.45 1.90 16 27 C -0.11 -2.82 5.00 30.65 0.15 -2.66 16 28 H 0.12 2.29 8.06 -2.91 -0.02 2.27 16 29 H 0.10 2.40 7.84 -2.91 -0.02 2.38 16 30 H 0.10 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.08 2.95 7.68 -2.39 -0.02 2.93 16 32 H 0.06 2.53 7.51 -2.39 -0.02 2.51 16 33 H 0.04 1.70 7.17 -2.39 -0.02 1.69 16 34 H 0.06 2.39 3.39 -2.39 -0.01 2.38 16 35 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.09 3.26 7.67 -2.39 -0.02 3.25 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.07 2.33 7.96 -2.39 -0.02 2.31 16 39 H 0.04 1.24 8.12 -2.39 -0.02 1.22 16 40 H 0.09 2.38 7.72 -2.39 -0.02 2.36 16 41 H 0.19 3.03 7.15 -2.91 -0.02 3.01 16 42 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.20 1.84 8.06 -2.91 -0.02 1.81 16 44 H 0.12 2.01 6.69 -2.39 -0.02 2.00 16 45 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.09 2.45 5.41 -2.39 -0.01 2.44 16 47 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -69.96 378.18 2.10 -67.86 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.91 Total: 29.94 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 8.13 Total: 8.41 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -8.78 Total: -120.57 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.87 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 1.88 Total: 40.23 kcal Total: -69.96 2.10 -67.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293679692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.505 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds