Wall clock time and date at job start Tue Mar 31 2020 15:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99685 * 2 1 4 4 N 1.46503 * 109.46681 * 124.99957 * 3 2 1 5 5 C 1.46500 * 119.99943 * 264.44623 * 4 3 2 6 6 C 1.50698 * 109.47219 * 270.00468 * 5 4 3 7 7 H 1.07996 * 119.99979 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99789 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00256 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99820 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47212 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47107 * 119.99806 * 10 8 6 13 13 H 1.48500 * 109.47318 * 240.00107 * 10 8 6 14 14 C 1.34780 * 119.99806 * 84.45080 * 4 3 2 15 15 O 1.21595 * 119.99942 * 185.90983 * 14 4 3 16 16 C 1.47441 * 120.00283 * 5.91175 * 14 4 3 17 17 C 1.39762 * 120.99254 * 53.65101 * 16 14 4 18 18 N 1.32211 * 118.99785 * 179.71106 * 17 16 14 19 19 C 1.31964 * 121.19256 * 0.54773 * 18 17 16 20 20 C 1.50694 * 118.88559 * 179.71001 * 19 18 17 21 21 C 1.54889 * 110.60259 * 303.05618 * 20 19 18 22 22 C 1.54890 * 102.75074 * 156.67512 * 21 20 19 23 23 C 1.54260 * 104.19300 * 322.05775 * 22 21 20 24 24 C 1.53875 * 106.60342 * 23.61167 * 23 22 21 25 25 N 1.31671 * 122.22799 * 359.44228 * 19 18 17 26 26 C 1.32990 * 120.84461 * 0.26867 * 25 19 18 27 27 N 1.37872 * 120.63988 * 179.97438 * 26 25 19 28 28 H 1.08001 * 119.99998 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.99843 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99858 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47260 * 5.00138 * 3 2 1 32 32 H 1.08999 * 109.46858 * 244.99539 * 3 2 1 33 33 H 1.08999 * 109.46991 * 30.00749 * 5 4 3 34 34 H 1.08996 * 109.46703 * 150.00286 * 5 4 3 35 35 H 0.96994 * 120.00609 * 180.02562 * 9 8 6 36 36 H 1.07993 * 120.50090 * 0.02562 * 17 16 14 37 37 H 1.09008 * 110.43942 * 180.43619 * 20 19 18 38 38 H 1.09000 * 110.75329 * 274.99237 * 21 20 19 39 39 H 1.09000 * 110.75464 * 38.35391 * 21 20 19 40 40 H 1.09001 * 110.48468 * 203.38019 * 22 21 20 41 41 H 1.09000 * 110.48595 * 80.73631 * 22 21 20 42 42 H 1.08998 * 110.03353 * 264.32345 * 23 22 21 43 43 H 1.09002 * 110.07239 * 142.91906 * 23 22 21 44 44 H 1.09000 * 110.03287 * 240.71650 * 24 23 22 45 45 H 1.09002 * 110.07288 * 119.30499 * 24 23 22 46 46 H 0.97005 * 120.00183 * 355.04364 * 27 26 25 47 47 H 0.96994 * 119.99830 * 175.03850 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.6005 1.9744 2.3880 6 6 2.9956 3.4283 2.3539 7 1 3.4905 3.8331 1.4835 8 6 2.7262 4.2414 3.4343 9 7 2.1240 3.7483 4.4944 10 14 3.2165 6.0434 3.3923 11 1 3.8751 6.3471 2.0965 12 1 2.0056 6.8895 3.5430 13 1 4.1594 6.3259 4.5043 14 6 4.2113 0.7654 1.0164 15 8 4.9417 0.6920 1.9857 16 6 4.6575 0.2348 -0.2848 17 6 4.6378 1.0325 -1.4323 18 7 5.0522 0.5182 -2.5776 19 6 5.4709 -0.7309 -2.6542 20 6 5.9257 -1.2658 -3.9876 21 6 4.8016 -1.1245 -5.0437 22 6 5.5855 -1.1250 -6.3795 23 6 6.8641 -0.3201 -6.0681 24 6 7.0805 -0.4097 -4.5472 25 7 5.5094 -1.5242 -1.6039 26 6 5.1174 -1.0926 -0.4087 27 7 5.1590 -1.9270 0.6881 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4026 -0.9313 33 1 1.5209 1.8941 2.5148 34 1 3.1018 1.4811 3.2206 35 1 1.9341 4.3204 5.2543 36 1 4.2939 2.0551 -1.3832 37 1 6.2333 -2.3075 -3.8950 38 1 4.1183 -1.9724 -4.9964 39 1 4.2635 -0.1857 -4.9118 40 1 5.0067 -0.6340 -7.1618 41 1 5.8382 -2.1439 -6.6732 42 1 6.7323 0.7201 -6.3659 43 1 7.7159 -0.7533 -6.5925 44 1 7.0536 0.5871 -4.1070 45 1 8.0369 -0.8866 -4.3329 46 1 5.4078 -2.8583 0.5798 47 1 4.9397 -1.5827 1.5679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295244012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:56 Heat of formation + Delta-G solvation = 24.153597 kcal Electronic energy + Delta-G solvation = -28548.666798 eV Core-core repulsion = 24731.435156 eV Total energy + Delta-G solvation = -3817.231642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.18501 -39.06090 -37.88077 -36.01035 -35.24682 -33.35385 -32.96191 -32.10187 -30.85143 -29.03187 -28.83751 -27.39337 -25.67488 -24.25096 -23.76427 -22.66384 -20.67238 -20.30568 -20.03716 -19.02921 -18.33363 -17.43303 -16.70437 -16.51871 -16.02575 -15.85837 -15.40901 -15.20977 -14.81926 -14.69828 -14.31076 -14.09176 -13.89078 -13.49229 -13.28711 -12.92040 -12.89245 -12.22535 -12.10393 -12.03562 -11.72866 -11.40023 -11.37748 -11.26216 -11.21832 -11.11099 -11.10218 -10.93073 -10.83005 -10.67261 -10.56075 -10.25549 -9.81208 -9.68303 -9.24849 -9.16183 -9.09683 -8.49758 -8.28748 -7.79102 -6.10344 -4.15764 0.87567 1.44053 2.39165 3.14766 3.26736 3.33213 3.35270 3.39413 3.78178 3.90530 4.01425 4.33739 4.40197 4.54382 4.56262 4.73176 4.87446 5.06892 5.17433 5.24349 5.27731 5.33960 5.35593 5.36969 5.45526 5.48301 5.52263 5.60965 5.63430 5.74077 5.77421 5.91195 5.96149 6.05832 6.11483 6.19975 6.24693 6.37844 6.74154 6.78228 6.85999 6.99652 7.18708 7.34295 7.43982 7.63563 7.85490 8.14940 8.24380 8.32574 8.76731 8.93574 9.49824 10.97700 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.003180 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.529102 B = 8802.118715 C = 9170.223845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.165 4.165 3 C 0.131 3.869 4 N -0.581 5.581 5 C 0.246 3.754 6 C -0.530 4.530 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.565 3.435 15 O -0.539 6.539 16 C -0.293 4.293 17 C 0.209 3.791 18 N -0.555 5.555 19 C 0.375 3.625 20 C -0.025 4.025 21 C -0.111 4.111 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.113 4.113 25 N -0.580 5.580 26 C 0.476 3.524 27 N -0.822 5.822 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.263 0.737 36 H 0.172 0.828 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.406 0.594 47 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -11.720 -18.525 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.184 4.184 3 C 0.007 3.993 4 N -0.311 5.311 5 C 0.127 3.873 6 C -0.568 4.568 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.351 3.649 15 O -0.417 6.417 16 C -0.307 4.307 17 C 0.046 3.954 18 N -0.273 5.273 19 C 0.106 3.894 20 C -0.045 4.045 21 C -0.150 4.150 22 C -0.160 4.160 23 C -0.158 4.158 24 C -0.151 4.151 25 N -0.305 5.305 26 C 0.228 3.772 27 N -0.365 5.365 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.189 0.811 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.235 0.765 47 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 3.581 -12.004 -18.596 22.421 hybrid contribution -0.089 1.070 1.393 1.759 sum 3.492 -10.934 -17.202 20.680 Atomic orbital electron populations 1.23811 0.95717 1.01812 1.00546 1.23344 0.96341 0.98810 0.99925 1.20754 0.93001 0.95530 0.89994 1.48178 1.12760 1.54363 1.15802 1.19364 0.96005 0.92201 0.79692 1.21456 1.39159 0.94040 1.02194 0.92268 1.24926 0.94968 0.98975 0.95111 1.69933 1.41518 1.36076 1.05620 0.86442 0.78240 0.84541 0.78219 1.19695 1.20913 1.20872 1.17638 0.82232 0.78491 0.86580 1.90761 1.53928 1.57994 1.38985 1.21188 1.14734 0.96602 0.98185 1.23162 0.87473 0.99174 0.85598 1.68133 1.17778 1.13943 1.27488 1.22724 0.87977 0.85510 0.93164 1.20830 0.96387 0.99911 0.87419 1.22549 0.96557 1.02879 0.92974 1.22336 0.96284 1.00173 0.97192 1.22096 0.97657 1.00631 0.95432 1.22172 0.96823 1.00690 0.95441 1.67811 1.25090 1.39206 0.98398 1.18260 0.85137 0.86726 0.87071 1.42249 1.73945 1.12524 1.07780 0.88120 0.88794 0.88326 0.88949 0.90717 0.94721 0.93608 0.92696 0.81112 0.88510 0.91568 0.89886 0.91444 0.91672 0.91541 0.91956 0.90504 0.91764 0.76472 0.74453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 14.32 29.01 0.42 -1.95 16 2 C -0.16 -2.43 9.80 -36.03 -0.35 -2.78 16 3 C 0.13 2.15 5.62 -5.19 -0.03 2.12 16 4 N -0.58 -11.90 2.45 -177.70 -0.44 -12.34 16 5 C 0.25 6.20 5.18 -5.19 -0.03 6.18 16 6 C -0.53 -14.50 9.39 -34.44 -0.32 -14.82 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -25.92 13.28 55.43 0.74 -25.19 16 10 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 14 C 0.57 11.56 6.55 -12.51 -0.08 11.48 16 15 O -0.54 -12.91 15.43 5.28 0.08 -12.83 16 16 C -0.29 -4.99 5.02 -104.52 -0.52 -5.52 16 17 C 0.21 3.24 8.92 -16.82 -0.15 3.09 16 18 N -0.55 -8.05 9.18 -10.45 -0.10 -8.14 16 19 C 0.37 5.20 6.44 -157.16 -1.01 4.19 16 20 C -0.03 -0.27 3.23 -90.11 -0.29 -0.56 16 21 C -0.11 -1.03 6.30 -24.74 -0.16 -1.19 16 22 C -0.12 -0.91 6.83 -25.07 -0.17 -1.08 16 23 C -0.12 -0.95 6.80 -25.62 -0.17 -1.12 16 24 C -0.11 -1.10 6.33 -25.61 -0.16 -1.26 16 25 N -0.58 -8.58 10.33 -9.75 -0.10 -8.68 16 26 C 0.48 7.45 7.83 -154.88 -1.21 6.24 16 27 N -0.82 -11.05 8.95 31.39 0.28 -10.77 16 28 H 0.10 1.27 7.84 -52.49 -0.41 0.85 16 29 H 0.09 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.10 1.47 8.06 -52.49 -0.42 1.04 16 31 H 0.09 1.53 7.68 -51.93 -0.40 1.13 16 32 H 0.07 1.10 4.47 -51.93 -0.23 0.87 16 33 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.05 1.30 7.35 -51.93 -0.38 0.92 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.17 2.45 7.30 -52.49 -0.38 2.07 16 37 H 0.10 0.98 8.12 -51.92 -0.42 0.55 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.88 7.63 -51.93 -0.40 0.48 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.88 7.41 -51.93 -0.38 0.49 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.41 4.28 8.95 -40.82 -0.37 3.92 16 47 H 0.42 6.18 6.95 -40.82 -0.28 5.90 16 LS Contribution 387.38 15.07 5.84 5.84 Total: -1.00 -31.70 387.38 -10.07 -41.78 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -7.00 Total: 9.31 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -4.35 Total: 4.64 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: 0.38 Total: -65.12 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.70 -10.07 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295244012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.932 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds