Wall clock time and date at job start Tue Mar 31 2020 15:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99685 * 2 1 4 4 N 1.46503 * 109.46681 * 124.99957 * 3 2 1 5 5 C 1.46500 * 119.99943 * 264.44623 * 4 3 2 6 6 C 1.50698 * 109.47219 * 270.00468 * 5 4 3 7 7 H 1.07996 * 119.99979 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99789 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00256 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99820 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47212 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47107 * 119.99806 * 10 8 6 13 13 H 1.48500 * 109.47318 * 240.00107 * 10 8 6 14 14 C 1.34780 * 119.99806 * 84.45080 * 4 3 2 15 15 O 1.21595 * 119.99942 * 185.90983 * 14 4 3 16 16 C 1.47441 * 120.00283 * 5.91175 * 14 4 3 17 17 C 1.39762 * 120.99254 * 53.65101 * 16 14 4 18 18 N 1.32211 * 118.99785 * 179.71106 * 17 16 14 19 19 C 1.31964 * 121.19256 * 0.54773 * 18 17 16 20 20 C 1.50694 * 118.88559 * 179.71001 * 19 18 17 21 21 C 1.54889 * 110.60259 * 303.05618 * 20 19 18 22 22 C 1.54890 * 102.75074 * 156.67512 * 21 20 19 23 23 C 1.54260 * 104.19300 * 322.05775 * 22 21 20 24 24 C 1.53875 * 106.60342 * 23.61167 * 23 22 21 25 25 N 1.31671 * 122.22799 * 359.44228 * 19 18 17 26 26 C 1.32990 * 120.84461 * 0.26867 * 25 19 18 27 27 N 1.37872 * 120.63988 * 179.97438 * 26 25 19 28 28 H 1.08001 * 119.99998 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.99843 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99858 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47260 * 5.00138 * 3 2 1 32 32 H 1.08999 * 109.46858 * 244.99539 * 3 2 1 33 33 H 1.08999 * 109.46991 * 30.00749 * 5 4 3 34 34 H 1.08996 * 109.46703 * 150.00286 * 5 4 3 35 35 H 0.96994 * 120.00609 * 180.02562 * 9 8 6 36 36 H 1.07993 * 120.50090 * 0.02562 * 17 16 14 37 37 H 1.09008 * 110.43942 * 180.43619 * 20 19 18 38 38 H 1.09000 * 110.75329 * 274.99237 * 21 20 19 39 39 H 1.09000 * 110.75464 * 38.35391 * 21 20 19 40 40 H 1.09001 * 110.48468 * 203.38019 * 22 21 20 41 41 H 1.09000 * 110.48595 * 80.73631 * 22 21 20 42 42 H 1.08998 * 110.03353 * 264.32345 * 23 22 21 43 43 H 1.09002 * 110.07239 * 142.91906 * 23 22 21 44 44 H 1.09000 * 110.03287 * 240.71650 * 24 23 22 45 45 H 1.09002 * 110.07288 * 119.30499 * 24 23 22 46 46 H 0.97005 * 120.00183 * 355.04364 * 27 26 25 47 47 H 0.96994 * 119.99830 * 175.03850 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.6005 1.9744 2.3880 6 6 2.9956 3.4283 2.3539 7 1 3.4905 3.8331 1.4835 8 6 2.7262 4.2414 3.4343 9 7 2.1240 3.7483 4.4944 10 14 3.2165 6.0434 3.3923 11 1 3.8751 6.3471 2.0965 12 1 2.0056 6.8895 3.5430 13 1 4.1594 6.3259 4.5043 14 6 4.2113 0.7654 1.0164 15 8 4.9417 0.6920 1.9857 16 6 4.6575 0.2348 -0.2848 17 6 4.6378 1.0325 -1.4323 18 7 5.0522 0.5182 -2.5776 19 6 5.4709 -0.7309 -2.6542 20 6 5.9257 -1.2658 -3.9876 21 6 4.8016 -1.1245 -5.0437 22 6 5.5855 -1.1250 -6.3795 23 6 6.8641 -0.3201 -6.0681 24 6 7.0805 -0.4097 -4.5472 25 7 5.5094 -1.5242 -1.6039 26 6 5.1174 -1.0926 -0.4087 27 7 5.1590 -1.9270 0.6881 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4026 -0.9313 33 1 1.5209 1.8941 2.5148 34 1 3.1018 1.4811 3.2206 35 1 1.9341 4.3204 5.2543 36 1 4.2939 2.0551 -1.3832 37 1 6.2333 -2.3075 -3.8950 38 1 4.1183 -1.9724 -4.9964 39 1 4.2635 -0.1857 -4.9118 40 1 5.0067 -0.6340 -7.1618 41 1 5.8382 -2.1439 -6.6732 42 1 6.7323 0.7201 -6.3659 43 1 7.7159 -0.7533 -6.5925 44 1 7.0536 0.5871 -4.1070 45 1 8.0369 -0.8866 -4.3329 46 1 5.4078 -2.8583 0.5798 47 1 4.9397 -1.5827 1.5679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295244012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:54 Heat of formation + Delta-G solvation = 5.641247 kcal Electronic energy + Delta-G solvation = -28549.469553 eV Core-core repulsion = 24731.435156 eV Total energy + Delta-G solvation = -3818.034398 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.40796 -40.53152 -38.76953 -37.46141 -36.48613 -35.19692 -34.16309 -33.71616 -32.02205 -30.23223 -29.53621 -29.03676 -27.09643 -25.69877 -25.00117 -24.27527 -21.54743 -21.29993 -21.02909 -20.46786 -19.53514 -18.62255 -18.48444 -18.20053 -17.45740 -16.96382 -16.49838 -16.41669 -16.05136 -16.00659 -15.83142 -15.55254 -15.04626 -14.58228 -14.26525 -14.20918 -14.16221 -14.13937 -13.38393 -13.26944 -13.09331 -12.92405 -12.85076 -12.63007 -12.30768 -12.28913 -12.20814 -12.17041 -11.97305 -11.89249 -11.66823 -11.57791 -11.20272 -10.98500 -10.74616 -10.65241 -10.37833 -10.33959 -9.64389 -9.39718 -8.22833 -6.37206 -0.35277 0.23112 1.22811 1.37988 1.40181 1.51610 1.65715 2.14222 2.28770 2.42163 2.68009 2.93303 3.07839 3.20550 3.51014 3.76952 3.79978 3.82038 3.96509 4.00791 4.15407 4.28028 4.34180 4.48464 4.60854 4.64975 4.67863 4.71338 4.74296 4.90206 4.96644 4.97987 5.01712 5.14582 5.17559 5.21678 5.35267 5.36534 5.46696 5.48557 5.58451 5.62559 5.64403 5.72444 5.86258 6.03314 6.04592 6.49407 6.61360 6.71968 7.14983 7.17939 7.36244 8.84631 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.003180 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.529102 B = 8802.118715 C = 9170.223845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.185 4.185 3 C 0.131 3.869 4 N -0.583 5.583 5 C 0.264 3.736 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.965 3.035 11 H -0.265 1.265 12 H -0.270 1.270 13 H -0.284 1.284 14 C 0.567 3.433 15 O -0.584 6.584 16 C -0.312 4.312 17 C 0.216 3.784 18 N -0.555 5.555 19 C 0.375 3.625 20 C -0.027 4.027 21 C -0.109 4.109 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.112 4.112 25 N -0.582 5.582 26 C 0.473 3.527 27 N -0.811 5.811 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.025 0.975 34 H 0.005 0.995 35 H 0.267 0.733 36 H 0.180 0.820 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.419 0.581 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 -12.000 -21.202 24.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.205 4.205 3 C 0.009 3.991 4 N -0.312 5.312 5 C 0.143 3.857 6 C -0.582 4.582 7 H 0.076 0.924 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.790 3.210 11 H -0.189 1.189 12 H -0.195 1.195 13 H -0.210 1.210 14 C 0.355 3.645 15 O -0.465 6.465 16 C -0.327 4.327 17 C 0.051 3.949 18 N -0.273 5.273 19 C 0.107 3.893 20 C -0.048 4.048 21 C -0.147 4.147 22 C -0.153 4.153 23 C -0.155 4.155 24 C -0.150 4.150 25 N -0.307 5.307 26 C 0.225 3.775 27 N -0.354 5.354 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.023 0.977 35 H 0.076 0.924 36 H 0.196 0.804 37 H 0.125 0.875 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.252 0.748 47 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 3.562 -12.326 -21.322 24.884 hybrid contribution -0.112 1.079 2.191 2.445 sum 3.451 -11.247 -19.130 22.458 Atomic orbital electron populations 1.24064 0.95127 1.03185 0.97488 1.23175 0.96885 0.97731 1.02677 1.20914 0.92544 0.96595 0.89028 1.48089 1.13717 1.53922 1.15425 1.18814 0.94641 0.91416 0.80819 1.21732 1.39095 0.95094 1.02277 0.92448 1.25802 0.94819 1.03519 0.94675 1.70045 1.42441 1.37791 1.06297 0.85400 0.78205 0.79174 0.78248 1.18941 1.19543 1.20958 1.18053 0.81522 0.77600 0.87326 1.90722 1.55102 1.59775 1.40916 1.20855 1.17317 0.97735 0.96746 1.23297 0.86837 0.99347 0.85389 1.68252 1.18064 1.14344 1.26641 1.23485 0.86437 0.85210 0.94143 1.21041 0.97316 1.00390 0.86018 1.22538 0.96275 1.02405 0.93515 1.22330 0.95701 1.01070 0.96238 1.22091 0.98580 1.00910 0.93914 1.22172 0.96741 0.99352 0.96767 1.67963 1.25439 1.39142 0.98125 1.18398 0.84784 0.86519 0.87836 1.42224 1.73047 1.13088 1.07035 0.87558 0.86544 0.88507 0.89272 0.89035 0.95701 0.97712 0.92404 0.80359 0.87533 0.90919 0.91302 0.90478 0.90262 0.91666 0.90396 0.92493 0.91099 0.74838 0.75082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 14.32 67.78 0.97 -2.97 16 2 C -0.19 -5.36 9.80 25.64 0.25 -5.11 16 3 C 0.13 4.32 5.62 85.63 0.48 4.80 16 4 N -0.58 -24.63 2.45 -834.39 -2.05 -26.68 16 5 C 0.26 13.88 5.18 85.63 0.44 14.32 16 6 C -0.54 -30.45 9.39 25.60 0.24 -30.21 16 7 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 8 C 0.01 0.63 5.46 84.66 0.46 1.09 16 9 N -0.93 -54.90 13.28 21.45 0.28 -54.62 16 10 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 C 0.57 24.02 6.55 86.67 0.57 24.59 16 15 O -0.58 -29.37 15.43 -4.02 -0.06 -29.43 16 16 C -0.31 -10.73 5.02 -19.80 -0.10 -10.83 16 17 C 0.22 6.60 8.92 85.00 0.76 7.35 16 18 N -0.55 -15.60 9.18 -186.99 -1.72 -17.32 16 19 C 0.38 9.95 6.44 138.73 0.89 10.84 16 20 C -0.03 -0.53 3.23 -10.47 -0.03 -0.56 16 21 C -0.11 -1.78 6.30 31.89 0.20 -1.58 16 22 C -0.12 -1.38 6.83 31.67 0.22 -1.16 16 23 C -0.12 -1.54 6.80 31.32 0.21 -1.33 16 24 C -0.11 -1.98 6.33 31.32 0.20 -1.78 16 25 N -0.58 -16.60 10.33 -184.77 -1.91 -18.51 16 26 C 0.47 14.72 7.83 133.74 1.05 15.77 16 27 N -0.81 -21.88 8.95 -54.60 -0.49 -22.37 16 28 H 0.11 2.49 7.84 -2.91 -0.02 2.47 16 29 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 30 H 0.10 2.84 8.06 -2.91 -0.02 2.81 16 31 H 0.09 2.95 7.68 -2.39 -0.02 2.93 16 32 H 0.09 2.66 4.47 -2.39 -0.01 2.65 16 33 H 0.02 1.34 8.07 -2.39 -0.02 1.32 16 34 H 0.00 0.29 7.35 -2.39 -0.02 0.27 16 35 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.18 5.06 7.30 -2.91 -0.02 5.04 16 37 H 0.11 1.89 8.12 -2.38 -0.02 1.87 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.34 7.63 -2.39 -0.02 1.32 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.06 1.24 7.41 -2.39 -0.02 1.22 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 46 H 0.42 8.63 8.95 -92.70 -0.83 7.80 16 47 H 0.42 12.62 6.95 -92.71 -0.64 11.98 16 Total: -1.00 -69.67 387.38 2.42 -67.25 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.48 Total: 32.31 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: 6.81 Total: 23.24 kcal Atomic # 7 Polarization: -133.62 SS G_CDS: -5.88 Total: -139.49 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.06 Total: -29.43 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -69.67 2.42 -67.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295244012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.888 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds