Wall clock time and date at job start Tue Mar 31 2020 15:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46822 * 2 1 4 4 H 1.09003 * 109.47357 * 304.99783 * 3 2 1 5 5 C 1.53003 * 109.47259 * 64.99790 * 3 2 1 6 6 N 1.46498 * 109.47298 * 185.00173 * 3 2 1 7 7 N 1.39992 * 125.90337 * 300.04103 * 6 3 2 8 8 C 1.30245 * 109.76089 * 179.97438 * 7 6 3 9 9 C 1.41116 * 108.58590 * 359.76427 * 8 7 6 10 10 C 1.37069 * 125.90966 * 119.99813 * 6 3 2 11 11 N 1.32513 * 133.45439 * 0.03601 * 10 6 3 12 12 C 1.31480 * 121.98010 * 180.02562 * 11 10 6 13 13 C 1.50699 * 119.16361 * 179.97438 * 12 11 10 14 14 C 1.38646 * 121.67120 * 0.02562 * 12 11 10 15 15 C 1.39335 * 119.36785 * 0.02562 * 14 12 11 16 16 C 1.47866 * 121.09625 * 179.97438 * 15 14 12 17 17 O 1.21540 * 120.00006 * 180.02562 * 16 15 14 18 18 N 1.34775 * 119.99519 * 359.97438 * 16 15 14 19 19 C 1.46506 * 119.99693 * 179.97438 * 18 16 15 20 20 H 1.08996 * 109.46660 * 35.00912 * 19 18 16 21 21 C 1.52997 * 109.47289 * 275.00198 * 19 18 16 22 22 C 1.50699 * 109.46928 * 155.00268 * 19 18 16 23 23 H 1.08003 * 119.99962 * 0.02562 * 22 19 18 24 24 C 1.37874 * 120.00270 * 180.02562 * 22 19 18 25 25 N 1.31516 * 119.99500 * 0.02562 * 24 22 19 26 26 Si 1.86803 * 120.00390 * 179.97438 * 24 22 19 27 27 H 1.48500 * 109.46921 * 60.00425 * 26 24 22 28 28 H 1.48496 * 109.46933 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.46946 * 300.00108 * 26 24 22 30 30 H 1.08993 * 109.47233 * 299.99690 * 1 2 3 31 31 H 1.08997 * 109.47214 * 60.00433 * 1 2 3 32 32 H 1.09005 * 109.47004 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47057 * 239.99873 * 2 1 3 34 34 H 1.08997 * 109.47214 * 119.99567 * 2 1 3 35 35 H 1.09003 * 109.46942 * 59.99739 * 5 3 2 36 36 H 1.08995 * 109.46927 * 179.97438 * 5 3 2 37 37 H 1.09003 * 109.47181 * 300.00374 * 5 3 2 38 38 H 1.08006 * 125.70621 * 180.02562 * 8 7 6 39 39 H 1.08998 * 109.47377 * 270.01943 * 13 12 11 40 40 H 1.09005 * 109.47160 * 30.02242 * 13 12 11 41 41 H 1.09000 * 109.47105 * 150.01693 * 13 12 11 42 42 H 1.08001 * 120.32115 * 179.97438 * 14 12 11 43 43 H 0.97000 * 120.00190 * 0.02562 * 18 16 15 44 44 H 1.09002 * 109.47153 * 179.97438 * 21 19 18 45 45 H 1.09001 * 109.46832 * 60.00146 * 21 19 18 46 46 H 1.09004 * 109.47261 * 300.00128 * 21 19 18 47 47 H 0.97002 * 119.99804 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6351 2.1266 1.3073 6 7 3.5000 1.4444 -0.1204 7 7 4.3982 0.8495 0.7735 8 6 5.6195 1.0409 0.3633 9 6 5.5796 1.7770 -0.8400 10 6 4.2228 2.0282 -1.1282 11 7 3.8871 2.7120 -2.2124 12 6 4.7884 3.1800 -3.0474 13 6 4.3355 3.9491 -4.2617 14 6 6.1450 2.9830 -2.8396 15 6 6.5684 2.2712 -1.7191 16 6 8.0055 2.0381 -1.4606 17 8 8.3526 1.4140 -0.4771 18 7 8.9303 2.5169 -2.3160 19 6 10.3543 2.2865 -2.0596 20 1 10.4870 1.3059 -1.6025 21 6 10.8833 3.3662 -1.1135 22 6 11.1142 2.3416 -3.3598 23 1 10.5891 2.5299 -4.2846 24 6 12.4797 2.1517 -3.3688 25 7 13.1190 1.9219 -2.2427 26 14 13.4216 2.2193 -4.9805 27 1 13.2412 3.5552 -5.6036 28 1 14.8647 1.9846 -4.7207 29 1 12.9076 1.1714 -5.8986 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 2.0697 1.5876 2.1492 36 1 1.9988 3.1541 1.3075 37 1 0.5488 2.1252 1.3969 38 1 6.5130 0.6909 0.8589 39 1 4.1821 3.2598 -5.0920 40 1 3.4005 4.4629 -4.0384 41 1 5.0964 4.6809 -4.5329 42 1 6.8667 3.3768 -3.5400 43 1 8.6533 3.0146 -3.1011 44 1 11.9426 3.1944 -0.9223 45 1 10.3337 3.3262 -0.1730 46 1 10.7505 4.3467 -1.5706 47 1 14.0798 1.7886 -2.2489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338078738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:38 Heat of formation + Delta-G solvation = 51.991171 kcal Electronic energy + Delta-G solvation = -28028.575780 eV Core-core repulsion = 24212.551266 eV Total energy + Delta-G solvation = -3816.024514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.79292 -39.18794 -38.21576 -36.51690 -34.91419 -33.17987 -32.35873 -31.92824 -31.04672 -29.08607 -28.73829 -27.41179 -25.31672 -25.11718 -24.17691 -22.41676 -22.22636 -21.19074 -19.91566 -19.41018 -17.96868 -17.22137 -16.89646 -16.06552 -15.74998 -15.29329 -15.25449 -14.93480 -14.47320 -14.29329 -14.22777 -13.97387 -13.67667 -13.46483 -13.31171 -12.96090 -12.68101 -12.56659 -12.46164 -12.27115 -12.06384 -12.04004 -11.84430 -11.75108 -11.37324 -11.16761 -11.12946 -11.00575 -10.82472 -10.76347 -10.42011 -10.31749 -10.27305 -9.86932 -9.15390 -9.09329 -8.76668 -8.60189 -8.33886 -8.01463 -6.16355 -4.26203 0.45417 1.16007 2.07677 2.52628 3.23352 3.26266 3.29148 3.29898 3.74728 3.96677 4.00448 4.24071 4.32575 4.55906 4.63011 4.70563 4.78745 4.85232 4.90411 5.04913 5.05655 5.16224 5.19443 5.34054 5.36296 5.43374 5.45062 5.48386 5.61479 5.64627 5.68180 5.70915 5.83666 5.94840 5.96846 5.98090 6.30246 6.54065 6.77507 6.84785 6.90536 7.08193 7.32903 7.46523 7.48585 7.63137 7.84630 7.87054 8.08856 8.52064 8.69355 8.94896 9.40995 10.89585 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.002674 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.024919 B =10466.947164 C =11233.350889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.171 3.829 4 H 0.104 0.896 5 C -0.162 4.162 6 N -0.388 5.388 7 N -0.246 5.246 8 C 0.102 3.898 9 C -0.188 4.188 10 C 0.312 3.688 11 N -0.499 5.499 12 C 0.193 3.807 13 C -0.104 4.104 14 C -0.187 4.187 15 C 0.010 3.990 16 C 0.540 3.460 17 O -0.538 6.538 18 N -0.693 5.693 19 C 0.264 3.736 20 H 0.052 0.948 21 C -0.148 4.148 22 C -0.536 4.536 23 H 0.062 0.938 24 C 0.067 3.933 25 N -0.882 5.882 26 Si 0.903 3.097 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.276 1.276 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.206 0.794 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.147 0.853 43 H 0.390 0.610 44 H 0.092 0.908 45 H 0.016 0.984 46 H 0.027 0.973 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.577 2.233 0.287 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.070 3.930 4 H 0.122 0.878 5 C -0.220 4.220 6 N -0.179 5.179 7 N -0.059 5.059 8 C -0.093 4.093 9 C -0.199 4.199 10 C 0.072 3.928 11 N -0.216 5.216 12 C 0.044 3.956 13 C -0.161 4.161 14 C -0.210 4.210 15 C -0.004 4.004 16 C 0.324 3.676 17 O -0.417 6.417 18 N -0.341 5.341 19 C 0.163 3.837 20 H 0.070 0.930 21 C -0.206 4.206 22 C -0.575 4.575 23 H 0.080 0.920 24 C -0.136 4.136 25 N -0.519 5.519 26 Si 0.730 3.270 27 H -0.201 1.201 28 H -0.211 1.211 29 H -0.201 1.201 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.223 0.777 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.164 0.836 43 H 0.224 0.776 44 H 0.110 0.890 45 H 0.035 0.965 46 H 0.047 0.953 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.900 1.315 1.925 24.014 hybrid contribution 1.829 0.494 -1.701 2.546 sum -22.072 1.809 0.224 22.147 Atomic orbital electron populations 1.21791 0.94479 1.02324 1.02175 1.21879 0.96374 0.95299 1.03522 1.21299 0.73699 0.97774 1.00217 0.87762 1.22190 1.01926 1.00965 0.96908 1.48631 1.05653 1.46154 1.17441 1.76860 0.99431 1.16114 1.13464 1.24147 0.95729 0.95870 0.93604 1.19321 0.93095 1.07697 0.99799 1.18940 0.88628 0.94877 0.90342 1.66207 1.39039 1.13387 1.02978 1.21072 0.88454 0.92427 0.93632 1.20791 1.02866 0.99334 0.93156 1.21999 0.96921 1.03090 0.98946 1.20286 0.94075 0.93381 0.92675 1.18028 0.84417 0.80871 0.84263 1.90702 1.81509 1.41145 1.28332 1.46526 1.08944 1.53640 1.25007 1.18837 0.73019 0.96236 0.95601 0.93004 1.22089 1.03924 0.97957 0.96665 1.21146 0.92614 1.51235 0.92478 0.92030 1.24880 0.97417 0.94548 0.96778 1.69888 1.09249 1.47192 1.25613 0.86490 0.78726 0.78620 0.83169 1.20109 1.21114 1.20147 0.92084 0.92421 0.92097 0.91551 0.90533 0.91133 0.92224 0.90559 0.77715 0.89823 0.90301 0.89864 0.83552 0.77639 0.88968 0.96505 0.95342 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.16 0.36 -0.63 16 2 C -0.13 -1.23 5.66 -26.73 -0.15 -1.38 16 3 C 0.17 1.82 3.17 -67.93 -0.22 1.60 16 4 H 0.10 1.07 8.07 -51.93 -0.42 0.65 16 5 C -0.16 -1.46 9.21 37.16 0.34 -1.12 16 6 N -0.39 -5.51 3.33 -53.91 -0.18 -5.69 16 7 N -0.25 -3.76 12.29 30.79 0.38 -3.38 16 8 C 0.10 1.67 11.29 -17.13 -0.19 1.47 16 9 C -0.19 -3.18 6.02 -106.63 -0.64 -3.82 16 10 C 0.31 4.88 7.96 -156.08 -1.24 3.64 16 11 N -0.50 -7.15 10.25 -8.60 -0.09 -7.24 16 12 C 0.19 2.42 6.77 -82.59 -0.56 1.86 16 13 C -0.10 -0.86 10.14 36.01 0.37 -0.49 16 14 C -0.19 -2.53 9.22 -39.02 -0.36 -2.89 16 15 C 0.01 0.17 5.93 -104.41 -0.62 -0.45 16 16 C 0.54 10.81 7.76 -12.32 -0.10 10.72 16 17 O -0.54 -12.34 14.80 5.33 0.08 -12.26 16 18 N -0.69 -14.03 5.03 -55.87 -0.28 -14.31 16 19 C 0.26 6.52 2.56 -69.08 -0.18 6.34 16 20 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 21 C -0.15 -3.58 9.26 37.16 0.34 -3.23 16 22 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 16 23 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 24 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 25 N -0.88 -24.30 11.32 55.43 0.63 -23.68 16 26 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 30 H 0.06 0.35 6.56 -51.93 -0.34 0.00 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.50 6.57 -51.93 -0.34 0.15 16 38 H 0.21 3.28 7.08 -52.48 -0.37 2.90 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 42 H 0.15 1.63 6.52 -52.49 -0.34 1.29 16 43 H 0.39 6.69 6.68 -40.82 -0.27 6.42 16 44 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 387.19 15.07 5.83 5.83 Total: -1.00 -30.91 387.19 -8.87 -39.78 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.98 Total: 6.58 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -3.24 Total: -0.77 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.46 Total: -54.30 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.91 -8.87 -39.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338078738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.771 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds