Wall clock time and date at job start Tue Mar 31 2020 15:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46822 * 2 1 4 4 H 1.09003 * 109.47357 * 304.99783 * 3 2 1 5 5 C 1.53003 * 109.47259 * 64.99790 * 3 2 1 6 6 N 1.46498 * 109.47298 * 185.00173 * 3 2 1 7 7 N 1.39992 * 125.90337 * 300.04103 * 6 3 2 8 8 C 1.30245 * 109.76089 * 179.97438 * 7 6 3 9 9 C 1.41116 * 108.58590 * 359.76427 * 8 7 6 10 10 C 1.37069 * 125.90966 * 119.99813 * 6 3 2 11 11 N 1.32513 * 133.45439 * 0.03601 * 10 6 3 12 12 C 1.31480 * 121.98010 * 180.02562 * 11 10 6 13 13 C 1.50699 * 119.16361 * 179.97438 * 12 11 10 14 14 C 1.38646 * 121.67120 * 0.02562 * 12 11 10 15 15 C 1.39335 * 119.36785 * 0.02562 * 14 12 11 16 16 C 1.47866 * 121.09625 * 179.97438 * 15 14 12 17 17 O 1.21540 * 120.00006 * 180.02562 * 16 15 14 18 18 N 1.34775 * 119.99519 * 359.97438 * 16 15 14 19 19 C 1.46506 * 119.99693 * 179.97438 * 18 16 15 20 20 H 1.08996 * 109.46660 * 35.00912 * 19 18 16 21 21 C 1.52997 * 109.47289 * 275.00198 * 19 18 16 22 22 C 1.50699 * 109.46928 * 155.00268 * 19 18 16 23 23 H 1.08003 * 119.99962 * 0.02562 * 22 19 18 24 24 C 1.37874 * 120.00270 * 180.02562 * 22 19 18 25 25 N 1.31516 * 119.99500 * 0.02562 * 24 22 19 26 26 Si 1.86803 * 120.00390 * 179.97438 * 24 22 19 27 27 H 1.48500 * 109.46921 * 60.00425 * 26 24 22 28 28 H 1.48496 * 109.46933 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.46946 * 300.00108 * 26 24 22 30 30 H 1.08993 * 109.47233 * 299.99690 * 1 2 3 31 31 H 1.08997 * 109.47214 * 60.00433 * 1 2 3 32 32 H 1.09005 * 109.47004 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47057 * 239.99873 * 2 1 3 34 34 H 1.08997 * 109.47214 * 119.99567 * 2 1 3 35 35 H 1.09003 * 109.46942 * 59.99739 * 5 3 2 36 36 H 1.08995 * 109.46927 * 179.97438 * 5 3 2 37 37 H 1.09003 * 109.47181 * 300.00374 * 5 3 2 38 38 H 1.08006 * 125.70621 * 180.02562 * 8 7 6 39 39 H 1.08998 * 109.47377 * 270.01943 * 13 12 11 40 40 H 1.09005 * 109.47160 * 30.02242 * 13 12 11 41 41 H 1.09000 * 109.47105 * 150.01693 * 13 12 11 42 42 H 1.08001 * 120.32115 * 179.97438 * 14 12 11 43 43 H 0.97000 * 120.00190 * 0.02562 * 18 16 15 44 44 H 1.09002 * 109.47153 * 179.97438 * 21 19 18 45 45 H 1.09001 * 109.46832 * 60.00146 * 21 19 18 46 46 H 1.09004 * 109.47261 * 300.00128 * 21 19 18 47 47 H 0.97002 * 119.99804 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6351 2.1266 1.3073 6 7 3.5000 1.4444 -0.1204 7 7 4.3982 0.8495 0.7735 8 6 5.6195 1.0409 0.3633 9 6 5.5796 1.7770 -0.8400 10 6 4.2228 2.0282 -1.1282 11 7 3.8871 2.7120 -2.2124 12 6 4.7884 3.1800 -3.0474 13 6 4.3355 3.9491 -4.2617 14 6 6.1450 2.9830 -2.8396 15 6 6.5684 2.2712 -1.7191 16 6 8.0055 2.0381 -1.4606 17 8 8.3526 1.4140 -0.4771 18 7 8.9303 2.5169 -2.3160 19 6 10.3543 2.2865 -2.0596 20 1 10.4870 1.3059 -1.6025 21 6 10.8833 3.3662 -1.1135 22 6 11.1142 2.3416 -3.3598 23 1 10.5891 2.5299 -4.2846 24 6 12.4797 2.1517 -3.3688 25 7 13.1190 1.9219 -2.2427 26 14 13.4216 2.2193 -4.9805 27 1 13.2412 3.5552 -5.6036 28 1 14.8647 1.9846 -4.7207 29 1 12.9076 1.1714 -5.8986 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 2.0697 1.5876 2.1492 36 1 1.9988 3.1541 1.3075 37 1 0.5488 2.1252 1.3969 38 1 6.5130 0.6909 0.8589 39 1 4.1821 3.2598 -5.0920 40 1 3.4005 4.4629 -4.0384 41 1 5.0964 4.6809 -4.5329 42 1 6.8667 3.3768 -3.5400 43 1 8.6533 3.0146 -3.1011 44 1 11.9426 3.1944 -0.9223 45 1 10.3337 3.3262 -0.1730 46 1 10.7505 4.3467 -1.5706 47 1 14.0798 1.7886 -2.2489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338078738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:37 Heat of formation + Delta-G solvation = 33.780405 kcal Electronic energy + Delta-G solvation = -28029.365458 eV Core-core repulsion = 24212.551266 eV Total energy + Delta-G solvation = -3816.814192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.95200 -40.68735 -39.43272 -37.40457 -36.75213 -34.64317 -33.95393 -32.92008 -32.08002 -30.67916 -29.77123 -28.39681 -27.32939 -26.03524 -25.39812 -23.67861 -23.16734 -22.66439 -21.44975 -20.71732 -19.20372 -18.62024 -18.08676 -17.72507 -17.04534 -16.87875 -16.15818 -16.08475 -16.04608 -15.75943 -15.38390 -15.00209 -14.82529 -14.64912 -14.43037 -14.38706 -13.83219 -13.72268 -13.50157 -13.22250 -13.04955 -12.99073 -12.89586 -12.80353 -12.77858 -12.71477 -12.69647 -12.31144 -12.25077 -12.14936 -11.97911 -11.68989 -11.48360 -11.28757 -11.11241 -10.59863 -10.51410 -9.95231 -9.79776 -9.42476 -8.15694 -6.33238 -0.76947 0.03336 1.03335 1.27652 1.48231 1.50135 1.57717 1.88621 2.20509 2.48104 2.70720 2.96067 3.15250 3.24895 3.49570 3.63157 3.67960 3.79186 3.85167 4.02186 4.14840 4.33408 4.36108 4.40351 4.44872 4.55837 4.68004 4.74717 4.79547 4.86031 4.88767 4.93238 4.93743 5.00284 5.04395 5.05556 5.09314 5.18121 5.31119 5.34897 5.42152 5.46566 5.57157 5.67772 5.82563 5.88610 6.09004 6.29650 6.71890 6.75233 6.83606 7.27881 7.43581 8.90476 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.002674 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.024919 B =10466.947164 C =11233.350889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.161 3.839 4 H 0.113 0.887 5 C -0.155 4.155 6 N -0.382 5.382 7 N -0.248 5.248 8 C 0.083 3.917 9 C -0.213 4.213 10 C 0.299 3.701 11 N -0.498 5.498 12 C 0.198 3.802 13 C -0.101 4.101 14 C -0.169 4.169 15 C -0.013 4.013 16 C 0.541 3.459 17 O -0.577 6.577 18 N -0.687 5.687 19 C 0.271 3.729 20 H 0.003 0.997 21 C -0.135 4.135 22 C -0.547 4.547 23 H 0.078 0.922 24 C 0.015 3.985 25 N -0.917 5.917 26 Si 0.972 3.028 27 H -0.261 1.261 28 H -0.289 1.289 29 H -0.271 1.271 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.108 0.892 38 H 0.197 0.803 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.175 0.825 43 H 0.407 0.593 44 H 0.068 0.932 45 H 0.012 0.988 46 H 0.043 0.957 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.958 3.841 -2.423 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.062 3.938 4 H 0.131 0.869 5 C -0.213 4.213 6 N -0.173 5.173 7 N -0.062 5.062 8 C -0.112 4.112 9 C -0.224 4.224 10 C 0.059 3.941 11 N -0.215 5.215 12 C 0.048 3.952 13 C -0.158 4.158 14 C -0.191 4.191 15 C -0.027 4.027 16 C 0.327 3.673 17 O -0.458 6.458 18 N -0.337 5.337 19 C 0.169 3.831 20 H 0.021 0.979 21 C -0.194 4.194 22 C -0.585 4.585 23 H 0.096 0.904 24 C -0.185 4.185 25 N -0.555 5.555 26 Si 0.797 3.203 27 H -0.186 1.186 28 H -0.215 1.215 29 H -0.196 1.196 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.126 0.874 38 H 0.213 0.787 39 H 0.120 0.880 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.192 0.808 43 H 0.244 0.756 44 H 0.087 0.913 45 H 0.031 0.969 46 H 0.062 0.938 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.331 2.935 -0.793 26.506 hybrid contribution 2.458 -0.001 -0.864 2.605 sum -23.873 2.933 -1.657 24.109 Atomic orbital electron populations 1.21771 0.91940 1.03178 1.03255 1.21829 0.98440 0.94007 1.02199 1.21703 0.71734 0.98968 1.01434 0.86901 1.22163 1.03837 0.99851 0.95428 1.49012 1.06673 1.45022 1.16618 1.76784 0.99340 1.16164 1.13899 1.24045 0.95908 0.97001 0.94244 1.19500 0.94062 1.08660 1.00226 1.19141 0.88264 0.95510 0.91137 1.66384 1.39413 1.13094 1.02603 1.21876 0.87794 0.91322 0.94210 1.20975 1.04007 0.99623 0.91221 1.22376 0.98238 1.00923 0.97601 1.19992 0.91664 0.96230 0.94819 1.18495 0.85812 0.79674 0.83324 1.90678 1.82481 1.42662 1.29935 1.46191 1.07341 1.54202 1.25917 1.18436 0.75481 0.93882 0.95348 0.97899 1.21917 1.02290 0.98576 0.96614 1.21494 0.93007 1.50834 0.93139 0.90404 1.25794 0.98526 0.94112 1.00105 1.70048 1.09414 1.48158 1.27908 0.85390 0.76830 0.79198 0.78883 1.18594 1.21493 1.19615 0.90731 0.91550 0.91430 0.93121 0.91628 0.92239 0.93134 0.87398 0.78654 0.88026 0.89402 0.87440 0.80786 0.75600 0.91289 0.96893 0.93806 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.67 71.98 0.70 -0.86 16 2 C -0.13 -2.23 5.66 30.60 0.17 -2.06 16 3 C 0.16 3.25 3.17 44.99 0.14 3.40 16 4 H 0.11 2.10 8.07 -2.39 -0.02 2.08 16 5 C -0.16 -2.59 9.21 71.98 0.66 -1.92 16 6 N -0.38 -10.88 3.33 -324.48 -1.08 -11.96 16 7 N -0.25 -7.91 12.29 -56.50 -0.69 -8.60 16 8 C 0.08 2.88 11.29 85.63 0.97 3.85 16 9 C -0.21 -7.42 6.02 -21.17 -0.13 -7.54 16 10 C 0.30 9.27 7.96 134.13 1.07 10.34 16 11 N -0.50 -13.32 10.25 -181.11 -1.86 -15.17 16 12 C 0.20 4.39 6.77 42.71 0.29 4.68 16 13 C -0.10 -1.21 10.14 71.24 0.72 -0.49 16 14 C -0.17 -4.21 9.22 22.63 0.21 -4.00 16 15 C -0.01 -0.44 5.93 -19.73 -0.12 -0.56 16 16 C 0.54 22.30 7.76 86.79 0.67 22.97 16 17 O -0.58 -28.11 14.80 -3.84 -0.06 -28.17 16 18 N -0.69 -27.91 5.03 -448.97 -2.26 -30.17 16 19 C 0.27 13.73 2.56 44.24 0.11 13.84 16 20 H 0.00 0.19 7.58 -2.39 -0.02 0.17 16 21 C -0.14 -6.72 9.26 71.98 0.67 -6.05 16 22 C -0.55 -27.90 8.73 25.60 0.22 -27.68 16 23 H 0.08 3.63 7.74 -2.91 -0.02 3.61 16 24 C 0.01 0.78 5.30 84.65 0.45 1.23 16 25 N -0.92 -51.67 11.32 21.45 0.24 -51.43 16 26 Si 0.97 40.78 29.54 68.60 2.03 42.81 16 27 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 28 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 29 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 30 H 0.07 0.62 6.56 -2.39 -0.02 0.60 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.11 1.10 6.57 -2.39 -0.02 1.08 16 38 H 0.20 6.96 7.08 -2.91 -0.02 6.94 16 39 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.11 0.84 8.07 -2.39 -0.02 0.82 16 42 H 0.17 3.24 6.52 -2.91 -0.02 3.22 16 43 H 0.41 13.35 6.68 -92.71 -0.62 12.73 16 44 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 45 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 47 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -70.06 387.19 3.50 -66.55 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.37 Total: 27.01 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 6.81 Total: 9.13 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -5.65 Total: -117.34 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.06 Total: -28.17 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -70.06 3.50 -66.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338078738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.331 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds