Wall clock time and date at job start Tue Mar 31 2020 15:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47434 * 2 1 4 4 H 1.09006 * 109.46383 * 305.00026 * 3 2 1 5 5 C 1.52999 * 109.46941 * 64.99931 * 3 2 1 6 6 N 1.46502 * 109.47115 * 185.00289 * 3 2 1 7 7 N 1.39991 * 125.90486 * 300.09914 * 6 3 2 8 8 C 1.30238 * 109.75989 * 180.28051 * 7 6 3 9 9 C 1.41114 * 108.58736 * 359.77876 * 8 7 6 10 10 C 1.37075 * 125.90597 * 120.00001 * 6 3 2 11 11 N 1.32514 * 133.45242 * 0.02562 * 10 6 3 12 12 C 1.31471 * 121.97890 * 179.68216 * 11 10 6 13 13 C 1.50697 * 119.16595 * 180.02562 * 12 11 10 14 14 C 1.38659 * 121.67180 * 0.02562 * 12 11 10 15 15 C 1.39338 * 119.36111 * 359.97438 * 14 12 11 16 16 C 1.47870 * 121.08556 * 179.97438 * 15 14 12 17 17 O 1.21546 * 119.99769 * 179.97438 * 16 15 14 18 18 N 1.34771 * 120.00197 * 359.97438 * 16 15 14 19 19 C 1.46501 * 120.00155 * 180.02562 * 18 16 15 20 20 C 1.52994 * 109.47209 * 180.02562 * 19 18 16 21 21 C 1.50704 * 109.47132 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99928 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00342 * 179.97438 * 21 20 19 24 24 N 1.31518 * 119.99741 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00289 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47122 * 60.00000 * 25 23 21 27 27 H 1.48503 * 109.47307 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46933 * 300.00025 * 25 23 21 29 29 H 1.08997 * 109.47515 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46998 * 300.00087 * 1 2 3 31 31 H 1.09003 * 109.47130 * 60.00098 * 1 2 3 32 32 H 1.08999 * 109.46998 * 239.99913 * 2 1 3 33 33 H 1.09003 * 109.47130 * 119.99902 * 2 1 3 34 34 H 1.09001 * 109.46446 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46994 * 300.00041 * 5 3 2 36 36 H 1.08996 * 109.47011 * 60.00567 * 5 3 2 37 37 H 1.08001 * 125.70793 * 179.74612 * 8 7 6 38 38 H 1.08998 * 109.47348 * 90.00042 * 13 12 11 39 39 H 1.09000 * 109.47016 * 209.99913 * 13 12 11 40 40 H 1.09005 * 109.46943 * 329.99718 * 13 12 11 41 41 H 1.07997 * 120.32298 * 179.97438 * 14 12 11 42 42 H 0.97001 * 119.99990 * 359.97438 * 18 16 15 43 43 H 1.09003 * 109.47003 * 300.00283 * 19 18 16 44 44 H 1.09000 * 109.47363 * 59.99297 * 19 18 16 45 45 H 1.08997 * 109.46865 * 299.99552 * 20 19 18 46 46 H 1.08994 * 109.47508 * 59.99615 * 20 19 18 47 47 H 0.96993 * 119.99856 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 7 3.5001 1.4442 -0.1205 7 7 4.3982 0.8482 0.7728 8 6 5.6197 1.0453 0.3663 9 6 5.5802 1.7869 -0.8337 10 6 4.2229 2.0279 -1.1283 11 7 3.8871 2.7117 -2.2126 12 6 4.7887 3.1853 -3.0440 13 6 4.3358 3.9549 -4.2580 14 6 6.1457 2.9947 -2.8323 15 6 6.5690 2.2842 -1.7110 16 6 8.0065 2.0580 -1.4484 17 8 8.3538 1.4357 -0.4637 18 7 8.9316 2.5416 -2.3008 19 6 10.3558 2.3170 -2.0409 20 6 11.1852 2.9648 -3.1513 21 6 12.6502 2.7331 -2.8842 22 1 12.9588 2.1796 -2.0097 23 6 13.5967 3.2278 -3.7563 24 7 13.2209 3.9015 -4.8215 25 14 15.4125 2.9413 -3.4249 26 1 15.6850 1.4820 -3.3899 27 1 16.2177 3.5700 -4.5028 28 1 15.7785 3.5448 -2.1183 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9983 3.1543 1.3071 35 1 0.5489 2.1252 1.3969 36 1 2.0699 1.5875 2.1491 37 1 6.5134 0.6997 0.8645 38 1 4.2652 5.0142 -4.0111 39 1 5.0556 3.8171 -5.0649 40 1 3.3591 3.5900 -4.5760 41 1 6.8676 3.3931 -3.5299 42 1 8.6544 3.0379 -3.0868 43 1 10.6243 2.7598 -1.0817 44 1 10.5559 1.2458 -2.0151 45 1 10.9168 2.5223 -4.1105 46 1 10.9851 4.0359 -3.1766 47 1 13.8867 4.2498 -5.4348 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342611171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:20 Heat of formation + Delta-G solvation = 45.602566 kcal Electronic energy + Delta-G solvation = -27381.608593 eV Core-core repulsion = 23565.307048 eV Total energy + Delta-G solvation = -3816.301545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.96166 -39.48114 -38.42848 -36.62556 -35.01303 -33.37417 -32.78793 -32.06981 -31.23054 -29.62497 -29.01248 -27.59475 -25.45737 -25.09402 -23.80464 -22.44673 -22.34925 -21.13270 -20.62172 -19.54737 -18.00759 -17.16869 -17.13994 -16.33610 -15.92364 -15.41613 -15.33611 -15.00783 -14.94395 -14.58792 -14.43372 -14.22386 -13.81828 -13.60540 -13.53139 -13.20145 -13.06072 -12.72548 -12.63874 -12.44872 -12.31867 -12.15234 -12.12834 -11.94667 -11.48643 -11.26905 -11.24262 -11.06258 -10.89079 -10.69640 -10.57213 -10.36991 -10.23500 -9.75360 -9.48107 -9.26651 -8.93282 -8.66046 -8.48162 -8.39643 -6.12653 -4.15689 0.25647 0.99185 1.93726 2.36126 2.97866 3.29465 3.31831 3.33731 3.39975 3.73998 3.83059 4.11321 4.37245 4.45018 4.48434 4.51258 4.63401 4.69533 4.76728 4.90100 4.97270 5.11232 5.17820 5.24551 5.24721 5.32349 5.32586 5.37128 5.50394 5.51940 5.59589 5.60484 5.73439 5.76414 5.85086 5.89062 6.11688 6.26948 6.27768 6.37297 6.64859 6.70388 6.75044 7.32201 7.45360 7.55538 7.72071 7.82156 7.85553 8.21759 8.43080 8.89669 9.49318 10.98825 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023963 B = 0.002209 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.182039 B =12671.630154 C =13565.898580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.171 3.829 4 H 0.105 0.895 5 C -0.162 4.162 6 N -0.386 5.386 7 N -0.242 5.242 8 C 0.099 3.901 9 C -0.187 4.187 10 C 0.313 3.687 11 N -0.495 5.495 12 C 0.195 3.805 13 C -0.106 4.106 14 C -0.183 4.183 15 C 0.004 3.996 16 C 0.547 3.453 17 O -0.534 6.534 18 N -0.708 5.708 19 C 0.120 3.880 20 C 0.012 3.988 21 C -0.523 4.523 22 H 0.059 0.941 23 C 0.059 3.941 24 N -0.894 5.894 25 Si 0.898 3.102 26 H -0.275 1.275 27 H -0.287 1.287 28 H -0.276 1.276 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.206 0.794 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.148 0.852 42 H 0.399 0.601 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.023 0.977 46 H 0.023 0.977 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.977 -2.018 4.735 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.069 3.931 4 H 0.123 0.877 5 C -0.220 4.220 6 N -0.177 5.177 7 N -0.055 5.055 8 C -0.097 4.097 9 C -0.198 4.198 10 C 0.073 3.927 11 N -0.212 5.212 12 C 0.046 3.954 13 C -0.163 4.163 14 C -0.205 4.205 15 C -0.010 4.010 16 C 0.332 3.668 17 O -0.412 6.412 18 N -0.358 5.358 19 C -0.001 4.001 20 C -0.025 4.025 21 C -0.562 4.562 22 H 0.078 0.922 23 C -0.143 4.143 24 N -0.532 5.532 25 Si 0.725 3.275 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.201 1.201 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.222 0.778 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.166 0.834 42 H 0.234 0.766 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.042 0.958 46 H 0.042 0.958 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.441 -2.812 6.135 28.259 hybrid contribution 2.290 0.379 -0.780 2.449 sum -25.151 -2.434 5.355 25.829 Atomic orbital electron populations 1.21791 0.94393 1.02389 1.02224 1.21880 0.96468 0.95201 1.03518 1.21337 0.73515 0.97883 1.00333 0.87661 1.22191 1.02045 1.00956 0.96816 1.48672 1.05762 1.45974 1.17269 1.76867 0.99415 1.15852 1.13369 1.24116 0.95790 0.96048 0.93709 1.19297 0.93107 1.07708 0.99717 1.18944 0.88558 0.94905 0.90312 1.66224 1.39093 1.12885 1.02978 1.21110 0.88356 0.92249 0.93697 1.20818 1.03066 0.99507 0.92922 1.22030 0.97116 1.02580 0.98818 1.20062 0.93383 0.94459 0.93109 1.18054 0.84711 0.80327 0.83750 1.90722 1.81679 1.40704 1.28074 1.46284 1.08171 1.55026 1.26323 1.21836 0.76214 1.00926 1.01164 1.19333 0.94328 0.96199 0.92664 1.20991 0.90501 1.35467 1.09204 0.92244 1.24992 0.99384 0.94916 0.94962 1.69937 1.34192 1.36304 1.12778 0.86563 0.84432 0.78578 0.77912 1.20096 1.21240 1.20103 0.92047 0.92055 0.92382 0.91541 0.90525 0.92193 0.90460 0.91117 0.77769 0.89672 0.89689 0.90170 0.83407 0.76633 0.92101 0.92097 0.95827 0.95823 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.67 37.15 0.36 -0.51 16 2 C -0.13 -1.09 5.66 -26.73 -0.15 -1.25 16 3 C 0.17 1.63 3.17 -67.93 -0.22 1.41 16 4 H 0.11 0.97 8.07 -51.93 -0.42 0.55 16 5 C -0.16 -1.31 9.21 37.16 0.34 -0.97 16 6 N -0.39 -4.97 3.33 -53.91 -0.18 -5.15 16 7 N -0.24 -3.34 12.29 30.79 0.38 -2.96 16 8 C 0.10 1.43 11.29 -17.14 -0.19 1.24 16 9 C -0.19 -2.81 6.02 -106.63 -0.64 -3.46 16 10 C 0.31 4.43 7.96 -156.07 -1.24 3.19 16 11 N -0.50 -6.44 10.25 -8.59 -0.09 -6.52 16 12 C 0.20 2.18 6.77 -82.59 -0.56 1.62 16 13 C -0.11 -0.77 10.14 36.00 0.37 -0.41 16 14 C -0.18 -2.15 9.22 -39.02 -0.36 -2.51 16 15 C 0.00 0.06 5.93 -104.41 -0.62 -0.56 16 16 C 0.55 9.24 7.79 -12.32 -0.10 9.15 16 17 O -0.53 -10.41 15.14 5.33 0.08 -10.33 16 18 N -0.71 -11.84 5.51 -61.25 -0.34 -12.18 16 19 C 0.12 2.44 5.61 -4.04 -0.02 2.42 16 20 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 21 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 22 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 24 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 25 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.44 6.56 -51.93 -0.34 0.10 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.21 2.82 7.08 -52.49 -0.37 2.45 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.15 1.37 6.52 -52.49 -0.34 1.03 16 42 H 0.40 5.65 6.61 -40.82 -0.27 5.38 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 392.01 15.07 5.91 5.91 Total: -1.00 -32.00 392.01 -9.23 -41.22 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.12 Total: 2.14 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -3.59 Total: -3.37 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.51 Total: -51.57 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.00 -9.23 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342611171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.828 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds