Wall clock time and date at job start Tue Mar 31 2020 15:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47434 * 2 1 4 4 H 1.09006 * 109.46383 * 305.00026 * 3 2 1 5 5 C 1.52999 * 109.46941 * 64.99931 * 3 2 1 6 6 N 1.46502 * 109.47115 * 185.00289 * 3 2 1 7 7 N 1.39991 * 125.90486 * 300.09914 * 6 3 2 8 8 C 1.30238 * 109.75989 * 180.28051 * 7 6 3 9 9 C 1.41114 * 108.58736 * 359.77876 * 8 7 6 10 10 C 1.37075 * 125.90597 * 120.00001 * 6 3 2 11 11 N 1.32514 * 133.45242 * 0.02562 * 10 6 3 12 12 C 1.31471 * 121.97890 * 179.68216 * 11 10 6 13 13 C 1.50697 * 119.16595 * 180.02562 * 12 11 10 14 14 C 1.38659 * 121.67180 * 0.02562 * 12 11 10 15 15 C 1.39338 * 119.36111 * 359.97438 * 14 12 11 16 16 C 1.47870 * 121.08556 * 179.97438 * 15 14 12 17 17 O 1.21546 * 119.99769 * 179.97438 * 16 15 14 18 18 N 1.34771 * 120.00197 * 359.97438 * 16 15 14 19 19 C 1.46501 * 120.00155 * 180.02562 * 18 16 15 20 20 C 1.52994 * 109.47209 * 180.02562 * 19 18 16 21 21 C 1.50704 * 109.47132 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99928 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00342 * 179.97438 * 21 20 19 24 24 N 1.31518 * 119.99741 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00289 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47122 * 60.00000 * 25 23 21 27 27 H 1.48503 * 109.47307 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46933 * 300.00025 * 25 23 21 29 29 H 1.08997 * 109.47515 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46998 * 300.00087 * 1 2 3 31 31 H 1.09003 * 109.47130 * 60.00098 * 1 2 3 32 32 H 1.08999 * 109.46998 * 239.99913 * 2 1 3 33 33 H 1.09003 * 109.47130 * 119.99902 * 2 1 3 34 34 H 1.09001 * 109.46446 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46994 * 300.00041 * 5 3 2 36 36 H 1.08996 * 109.47011 * 60.00567 * 5 3 2 37 37 H 1.08001 * 125.70793 * 179.74612 * 8 7 6 38 38 H 1.08998 * 109.47348 * 90.00042 * 13 12 11 39 39 H 1.09000 * 109.47016 * 209.99913 * 13 12 11 40 40 H 1.09005 * 109.46943 * 329.99718 * 13 12 11 41 41 H 1.07997 * 120.32298 * 179.97438 * 14 12 11 42 42 H 0.97001 * 119.99990 * 359.97438 * 18 16 15 43 43 H 1.09003 * 109.47003 * 300.00283 * 19 18 16 44 44 H 1.09000 * 109.47363 * 59.99297 * 19 18 16 45 45 H 1.08997 * 109.46865 * 299.99552 * 20 19 18 46 46 H 1.08994 * 109.47508 * 59.99615 * 20 19 18 47 47 H 0.96993 * 119.99856 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 7 3.5001 1.4442 -0.1205 7 7 4.3982 0.8482 0.7728 8 6 5.6197 1.0453 0.3663 9 6 5.5802 1.7869 -0.8337 10 6 4.2229 2.0279 -1.1283 11 7 3.8871 2.7117 -2.2126 12 6 4.7887 3.1853 -3.0440 13 6 4.3358 3.9549 -4.2580 14 6 6.1457 2.9947 -2.8323 15 6 6.5690 2.2842 -1.7110 16 6 8.0065 2.0580 -1.4484 17 8 8.3538 1.4357 -0.4637 18 7 8.9316 2.5416 -2.3008 19 6 10.3558 2.3170 -2.0409 20 6 11.1852 2.9648 -3.1513 21 6 12.6502 2.7331 -2.8842 22 1 12.9588 2.1796 -2.0097 23 6 13.5967 3.2278 -3.7563 24 7 13.2209 3.9015 -4.8215 25 14 15.4125 2.9413 -3.4249 26 1 15.6850 1.4820 -3.3899 27 1 16.2177 3.5700 -4.5028 28 1 15.7785 3.5448 -2.1183 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9983 3.1543 1.3071 35 1 0.5489 2.1252 1.3969 36 1 2.0699 1.5875 2.1491 37 1 6.5134 0.6997 0.8645 38 1 4.2652 5.0142 -4.0111 39 1 5.0556 3.8171 -5.0649 40 1 3.3591 3.5900 -4.5760 41 1 6.8676 3.3931 -3.5299 42 1 8.6544 3.0379 -3.0868 43 1 10.6243 2.7598 -1.0817 44 1 10.5559 1.2458 -2.0151 45 1 10.9168 2.5223 -4.1105 46 1 10.9851 4.0359 -3.1766 47 1 13.8867 4.2498 -5.4348 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342611171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:18 Heat of formation + Delta-G solvation = 26.826033 kcal Electronic energy + Delta-G solvation = -27382.422805 eV Core-core repulsion = 23565.307048 eV Total energy + Delta-G solvation = -3817.115756 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.98310 -40.78276 -39.46980 -37.40868 -36.64725 -34.93495 -34.19855 -32.94717 -32.19336 -31.26019 -29.79810 -28.48050 -27.06537 -25.93810 -25.07758 -23.58673 -23.18408 -22.74365 -21.82768 -20.60774 -19.01055 -18.63512 -18.21553 -18.02086 -16.96147 -16.65066 -16.42958 -16.39308 -16.17009 -16.07147 -15.42315 -15.07377 -14.87545 -14.75658 -14.68044 -14.39299 -14.26887 -13.86139 -13.54148 -13.23074 -13.20285 -13.06656 -12.93080 -12.82244 -12.79940 -12.70850 -12.53694 -12.32521 -12.23085 -11.99128 -11.72391 -11.69661 -11.51824 -11.51700 -11.27748 -10.58874 -10.57838 -10.13433 -9.89062 -9.45974 -8.21760 -6.31337 -0.81810 0.00034 1.01478 1.25728 1.44057 1.45539 1.53354 1.76980 2.00353 2.44034 2.64770 2.94215 3.13329 3.19853 3.38342 3.60455 3.63695 3.77710 3.82795 3.99442 4.11507 4.30837 4.33816 4.37881 4.42987 4.50204 4.51053 4.55288 4.66894 4.74124 4.84852 4.86416 4.87394 4.91686 4.99468 5.02970 5.05118 5.15656 5.21213 5.30971 5.34396 5.44597 5.48904 5.61190 5.80014 5.80424 6.17880 6.28402 6.47573 6.73701 6.81149 7.07754 7.37512 8.89585 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023963 B = 0.002209 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.182039 B =12671.630154 C =13565.898580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.161 3.839 4 H 0.112 0.888 5 C -0.155 4.155 6 N -0.383 5.383 7 N -0.247 5.247 8 C 0.084 3.916 9 C -0.211 4.211 10 C 0.298 3.702 11 N -0.498 5.498 12 C 0.198 3.802 13 C -0.103 4.103 14 C -0.168 4.168 15 C -0.015 4.015 16 C 0.550 3.450 17 O -0.565 6.565 18 N -0.701 5.701 19 C 0.140 3.860 20 C 0.022 3.978 21 C -0.547 4.547 22 H 0.059 0.941 23 C 0.009 3.991 24 N -0.924 5.924 25 Si 0.962 3.038 26 H -0.270 1.270 27 H -0.282 1.282 28 H -0.270 1.270 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.202 0.798 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.175 0.825 42 H 0.412 0.588 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.012 0.988 46 H 0.012 0.988 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.355 -1.356 3.907 27.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.061 3.939 4 H 0.130 0.870 5 C -0.213 4.213 6 N -0.174 5.174 7 N -0.061 5.061 8 C -0.111 4.111 9 C -0.222 4.222 10 C 0.058 3.942 11 N -0.215 5.215 12 C 0.047 3.953 13 C -0.160 4.160 14 C -0.190 4.190 15 C -0.029 4.029 16 C 0.337 3.663 17 O -0.444 6.444 18 N -0.352 5.352 19 C 0.017 3.983 20 C -0.015 4.015 21 C -0.585 4.585 22 H 0.077 0.923 23 C -0.191 4.191 24 N -0.563 5.563 25 Si 0.786 3.214 26 H -0.195 1.195 27 H -0.207 1.207 28 H -0.195 1.195 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.219 0.781 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.192 0.808 42 H 0.250 0.750 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.031 0.969 46 H 0.031 0.969 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -28.853 -2.151 5.310 29.417 hybrid contribution 2.619 0.205 -0.574 2.689 sum -26.234 -1.946 4.736 26.729 Atomic orbital electron populations 1.21773 0.92068 1.03168 1.03214 1.21823 0.98351 0.93990 1.02252 1.21693 0.71812 0.98967 1.01381 0.87027 1.22159 1.03819 0.99849 0.95456 1.49020 1.06692 1.45049 1.16588 1.76798 0.99446 1.16047 1.13835 1.24098 0.95997 0.96829 0.94161 1.19480 0.93887 1.08623 1.00198 1.19165 0.88437 0.95551 0.91037 1.66371 1.39557 1.12809 1.02747 1.21841 0.87927 0.91318 0.94195 1.20980 1.03945 0.99650 0.91456 1.22391 0.98187 1.00695 0.97752 1.19862 0.91549 0.96688 0.94768 1.18363 0.85662 0.79324 0.82949 1.90703 1.82377 1.42007 1.29353 1.46014 1.06726 1.55425 1.27050 1.21345 0.77818 0.99815 0.99363 1.19145 0.93708 0.95538 0.93150 1.21428 0.92327 1.35460 1.09287 0.92303 1.25819 1.03811 0.94655 0.94766 1.70035 1.35611 1.37100 1.13558 0.85551 0.79170 0.78680 0.77961 1.19475 1.20690 1.19487 0.91431 0.90769 0.91633 0.93068 0.91521 0.93150 0.87519 0.92129 0.78119 0.88028 0.87571 0.89490 0.80780 0.75019 0.92951 0.92951 0.96936 0.96927 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.67 71.98 0.70 -0.69 16 2 C -0.13 -2.00 5.66 30.59 0.17 -1.82 16 3 C 0.16 2.95 3.17 44.99 0.14 3.10 16 4 H 0.11 1.90 8.07 -2.38 -0.02 1.88 16 5 C -0.16 -2.33 9.21 71.98 0.66 -1.67 16 6 N -0.38 -9.90 3.33 -324.47 -1.08 -10.98 16 7 N -0.25 -7.06 12.29 -56.50 -0.69 -7.76 16 8 C 0.08 2.55 11.29 85.63 0.97 3.51 16 9 C -0.21 -6.46 6.02 -21.17 -0.13 -6.58 16 10 C 0.30 8.39 7.96 134.13 1.07 9.46 16 11 N -0.50 -12.27 10.25 -181.10 -1.86 -14.12 16 12 C 0.20 3.97 6.77 42.71 0.29 4.26 16 13 C -0.10 -1.15 10.14 71.23 0.72 -0.42 16 14 C -0.17 -3.65 9.22 22.64 0.21 -3.45 16 15 C -0.01 -0.43 5.93 -19.73 -0.12 -0.55 16 16 C 0.55 18.78 7.79 86.79 0.68 19.46 16 17 O -0.56 -22.69 15.14 -3.86 -0.06 -22.75 16 18 N -0.70 -23.28 5.51 -465.96 -2.57 -25.85 16 19 C 0.14 5.72 5.61 86.38 0.48 6.21 16 20 C 0.02 1.06 5.09 29.85 0.15 1.21 16 21 C -0.55 -29.63 9.11 25.60 0.23 -29.40 16 22 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 23 C 0.01 0.47 5.46 84.65 0.46 0.93 16 24 N -0.92 -52.66 13.29 21.45 0.28 -52.38 16 25 Si 0.96 42.81 29.54 68.60 2.03 44.83 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.53 6.56 -2.39 -0.02 0.51 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 0.95 6.56 -2.39 -0.02 0.93 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.20 6.01 7.08 -2.91 -0.02 5.99 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 0.78 8.07 -2.39 -0.02 0.76 16 40 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.17 2.74 6.52 -2.91 -0.02 2.72 16 42 H 0.41 11.25 6.61 -92.71 -0.61 10.63 16 43 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -69.50 392.01 3.12 -66.38 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.37 Total: 19.05 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 6.69 Total: 3.57 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -5.92 Total: -111.09 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.06 Total: -22.75 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -69.50 3.12 -66.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342611171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.207 kcal (2) G-P(sol) polarization free energy of solvation -69.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds