Wall clock time and date at job start Tue Mar 31 2020 15:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.53001 * 109.47242 * 295.00551 * 3 2 1 6 6 N 1.46496 * 109.47484 * 175.00385 * 3 2 1 7 7 N 1.39989 * 125.90683 * 60.02077 * 6 3 2 8 8 C 1.30249 * 109.76135 * 180.02562 * 7 6 3 9 9 C 1.41123 * 108.58514 * 0.02562 * 8 7 6 10 10 C 1.37085 * 125.90529 * 239.71906 * 6 3 2 11 11 N 1.32511 * 133.45135 * 359.96619 * 10 6 3 12 12 C 1.31475 * 121.97639 * 180.02562 * 11 10 6 13 13 C 1.50705 * 119.16389 * 180.02562 * 12 11 10 14 14 C 1.38650 * 121.67211 * 359.97438 * 12 11 10 15 15 C 1.39345 * 119.36297 * 359.58375 * 14 12 11 16 16 C 1.47872 * 121.08436 * 179.87643 * 15 14 12 17 17 O 1.21545 * 119.99451 * 180.80052 * 16 15 14 18 18 N 1.34772 * 120.00267 * 0.79535 * 16 15 14 19 19 C 1.46503 * 119.99594 * 180.02562 * 18 16 15 20 20 C 1.53004 * 109.46620 * 180.02562 * 19 18 16 21 21 C 1.50701 * 109.46489 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00975 * 359.97438 * 21 20 19 23 23 C 1.37885 * 119.99589 * 179.97438 * 21 20 19 24 24 N 1.31517 * 120.00024 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99961 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46992 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46961 * 120.00289 * 25 23 21 28 28 H 1.48498 * 109.47218 * 239.99948 * 25 23 21 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 34 34 H 1.08998 * 109.47430 * 59.99652 * 5 3 2 35 35 H 1.08996 * 109.47271 * 180.02562 * 5 3 2 36 36 H 1.09008 * 109.46731 * 299.99706 * 5 3 2 37 37 H 1.07995 * 125.70780 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.46866 * 89.99633 * 13 12 11 39 39 H 1.08999 * 109.46715 * 209.99689 * 13 12 11 40 40 H 1.09001 * 109.46777 * 330.00122 * 13 12 11 41 41 H 1.08003 * 120.32026 * 180.02562 * 14 12 11 42 42 H 0.96995 * 120.00016 * 0.02562 * 18 16 15 43 43 H 1.08997 * 109.46941 * 300.00155 * 19 18 16 44 44 H 1.08991 * 109.47034 * 60.00557 * 19 18 16 45 45 H 1.08993 * 109.46931 * 299.99927 * 20 19 18 46 46 H 1.09004 * 109.47027 * 60.00457 * 20 19 18 47 47 H 0.96996 * 119.99813 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 7 3.5000 1.4443 0.1203 7 7 4.3982 0.8505 -0.7743 8 6 5.6195 1.0417 -0.3640 9 6 5.5799 1.7806 0.8377 10 6 4.2231 2.0329 1.1253 11 7 3.8876 2.7221 2.2062 12 6 4.7892 3.1946 3.0383 13 6 4.3366 3.9697 4.2489 14 6 6.1458 2.9971 2.8308 15 6 6.5685 2.2726 1.7180 16 6 8.0057 2.0414 1.4585 17 8 8.3529 1.4191 0.4739 18 7 8.9306 2.5208 2.3135 19 6 10.3546 2.2921 2.0559 20 6 11.1839 2.9344 3.1698 21 6 12.6486 2.6997 2.9044 22 1 12.9573 2.1474 2.0293 23 6 13.5949 3.1903 3.7792 24 7 13.2191 3.8625 4.8453 25 14 15.4106 2.8988 3.4507 26 1 15.5679 2.1208 2.1957 27 1 16.1046 4.2044 3.3136 28 1 16.0026 2.1400 4.5816 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 0.5488 2.1253 -1.3968 35 1 1.9988 3.1541 -1.3075 36 1 2.0698 1.5875 -2.1492 37 1 6.5131 0.6930 -0.8603 38 1 4.1842 3.2845 5.0828 39 1 5.0973 4.7034 4.5157 40 1 3.4010 4.4816 4.0236 41 1 6.8677 3.3947 3.5288 42 1 8.6535 3.0172 3.0994 43 1 10.5513 1.2204 2.0288 44 1 10.6264 2.7358 1.0982 45 1 10.9871 4.0061 3.1973 46 1 10.9120 2.4903 4.1274 47 1 13.8848 4.2073 5.4608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342611172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:23 Heat of formation + Delta-G solvation = 45.507752 kcal Electronic energy + Delta-G solvation = -27381.728309 eV Core-core repulsion = 23565.422652 eV Total energy + Delta-G solvation = -3816.305656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.96102 -39.48136 -38.42869 -36.62516 -35.01407 -33.37486 -32.79004 -32.06965 -31.23108 -29.62610 -29.01058 -27.59470 -25.45916 -25.09641 -23.80671 -22.44729 -22.34898 -21.13508 -20.62225 -19.54779 -18.00774 -17.16934 -17.13973 -16.34211 -15.92357 -15.41824 -15.33467 -15.00630 -14.94823 -14.57786 -14.42219 -14.25532 -13.79727 -13.61908 -13.51957 -13.20439 -13.05883 -12.74005 -12.63228 -12.44903 -12.33198 -12.15378 -12.12338 -11.94810 -11.48591 -11.26071 -11.24048 -11.09426 -10.89060 -10.66654 -10.57728 -10.38545 -10.22959 -9.75413 -9.47603 -9.24728 -8.93306 -8.66403 -8.48600 -8.40099 -6.13270 -4.16068 0.25600 0.99152 1.93713 2.36058 2.97832 3.26309 3.32008 3.35382 3.41263 3.73928 3.83042 4.11331 4.37065 4.45035 4.48295 4.51297 4.63381 4.69515 4.76698 4.90092 4.97225 5.11192 5.17839 5.24179 5.24702 5.32352 5.32522 5.37010 5.50382 5.51989 5.59544 5.60497 5.73410 5.76368 5.85072 5.89048 6.11656 6.26929 6.27673 6.37272 6.64802 6.70387 6.74959 7.32158 7.45485 7.55302 7.72046 7.82082 7.85426 8.21499 8.43041 8.89867 9.49089 10.98301 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.002209 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.225338 B =12670.690137 C =13564.118189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.171 3.829 4 H 0.105 0.895 5 C -0.162 4.162 6 N -0.386 5.386 7 N -0.242 5.242 8 C 0.099 3.901 9 C -0.187 4.187 10 C 0.313 3.687 11 N -0.495 5.495 12 C 0.195 3.805 13 C -0.106 4.106 14 C -0.183 4.183 15 C 0.004 3.996 16 C 0.547 3.453 17 O -0.534 6.534 18 N -0.708 5.708 19 C 0.120 3.880 20 C 0.011 3.989 21 C -0.521 4.521 22 H 0.060 0.940 23 C 0.059 3.941 24 N -0.893 5.893 25 Si 0.897 3.103 26 H -0.271 1.271 27 H -0.283 1.283 28 H -0.283 1.283 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.206 0.794 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.148 0.852 42 H 0.399 0.601 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.024 0.976 46 H 0.024 0.976 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.986 -1.959 -4.807 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.069 3.931 4 H 0.123 0.877 5 C -0.220 4.220 6 N -0.177 5.177 7 N -0.055 5.055 8 C -0.097 4.097 9 C -0.198 4.198 10 C 0.073 3.927 11 N -0.212 5.212 12 C 0.046 3.954 13 C -0.163 4.163 14 C -0.205 4.205 15 C -0.010 4.010 16 C 0.332 3.668 17 O -0.412 6.412 18 N -0.358 5.358 19 C -0.001 4.001 20 C -0.026 4.026 21 C -0.560 4.560 22 H 0.079 0.921 23 C -0.143 4.143 24 N -0.532 5.532 25 Si 0.724 3.276 26 H -0.196 1.196 27 H -0.209 1.209 28 H -0.209 1.209 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.222 0.778 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.166 0.834 42 H 0.234 0.766 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.042 0.958 46 H 0.042 0.958 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.452 -2.749 -6.222 28.282 hybrid contribution 2.289 0.366 0.821 2.459 sum -25.163 -2.383 -5.400 25.846 Atomic orbital electron populations 1.21792 0.94389 1.02389 1.02225 1.21878 0.96465 0.95190 1.03518 1.21335 0.73516 0.97886 1.00330 0.87662 1.22194 1.02045 1.00961 0.96827 1.48672 1.05743 1.45818 1.17448 1.76869 0.99412 1.15932 1.13288 1.24120 0.95794 0.96120 0.93630 1.19297 0.93134 1.07654 0.99738 1.18945 0.88561 0.94787 0.90425 1.66225 1.39066 1.12926 1.02962 1.21111 0.88353 0.92324 0.93631 1.20819 1.03047 0.99337 0.93108 1.22031 0.97136 1.02479 0.98898 1.20063 0.93384 0.94372 0.93196 1.18054 0.84707 0.80332 0.83748 1.90722 1.81670 1.40663 1.28118 1.46285 1.08192 1.55102 1.26229 1.21836 0.76218 1.00913 1.01168 1.19346 0.94369 0.96248 0.92633 1.21070 0.90498 1.35386 1.09066 0.92127 1.24999 0.99404 0.94926 0.94976 1.69957 1.33977 1.36578 1.12692 0.86455 0.84735 0.78005 0.78365 1.19565 1.20932 1.20929 0.92046 0.92387 0.92047 0.91539 0.90526 0.90461 0.92193 0.91122 0.77769 0.89673 0.89688 0.90172 0.83408 0.76633 0.92098 0.92093 0.95813 0.95814 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.67 37.16 0.36 -0.51 16 2 C -0.13 -1.09 5.66 -26.73 -0.15 -1.24 16 3 C 0.17 1.63 3.17 -67.93 -0.22 1.41 16 4 H 0.11 0.97 8.07 -51.92 -0.42 0.55 16 5 C -0.16 -1.31 9.20 37.16 0.34 -0.97 16 6 N -0.39 -4.97 3.33 -53.91 -0.18 -5.15 16 7 N -0.24 -3.34 12.29 30.79 0.38 -2.96 16 8 C 0.10 1.43 11.29 -17.13 -0.19 1.24 16 9 C -0.19 -2.81 6.02 -106.63 -0.64 -3.45 16 10 C 0.31 4.43 7.96 -156.06 -1.24 3.19 16 11 N -0.50 -6.44 10.25 -8.59 -0.09 -6.52 16 12 C 0.20 2.18 6.77 -82.59 -0.56 1.62 16 13 C -0.11 -0.77 10.14 36.01 0.37 -0.41 16 14 C -0.18 -2.15 9.22 -39.02 -0.36 -2.51 16 15 C 0.00 0.06 5.93 -104.41 -0.62 -0.56 16 16 C 0.55 9.24 7.79 -12.32 -0.10 9.14 16 17 O -0.53 -10.40 15.14 5.33 0.08 -10.32 16 18 N -0.71 -11.83 5.51 -61.24 -0.34 -12.17 16 19 C 0.12 2.44 5.61 -4.04 -0.02 2.42 16 20 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 21 C -0.52 -14.08 9.11 -34.44 -0.31 -14.39 16 22 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 23 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 24 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 25 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.44 6.56 -51.93 -0.34 0.10 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 37 H 0.21 2.82 7.08 -52.49 -0.37 2.45 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.15 1.37 6.53 -52.48 -0.34 1.03 16 42 H 0.40 5.65 6.62 -40.82 -0.27 5.38 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 392.01 15.07 5.91 5.91 Total: -1.00 -32.05 392.01 -9.23 -41.28 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.12 Total: 2.08 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -3.59 Total: -3.37 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.51 Total: -51.56 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.05 -9.23 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342611172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.789 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds