Wall clock time and date at job start Tue Mar 31 2020 15:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.53001 * 109.47242 * 295.00551 * 3 2 1 6 6 N 1.46496 * 109.47484 * 175.00385 * 3 2 1 7 7 N 1.39989 * 125.90683 * 60.02077 * 6 3 2 8 8 C 1.30249 * 109.76135 * 180.02562 * 7 6 3 9 9 C 1.41123 * 108.58514 * 0.02562 * 8 7 6 10 10 C 1.37085 * 125.90529 * 239.71906 * 6 3 2 11 11 N 1.32511 * 133.45135 * 359.96619 * 10 6 3 12 12 C 1.31475 * 121.97639 * 180.02562 * 11 10 6 13 13 C 1.50705 * 119.16389 * 180.02562 * 12 11 10 14 14 C 1.38650 * 121.67211 * 359.97438 * 12 11 10 15 15 C 1.39345 * 119.36297 * 359.58375 * 14 12 11 16 16 C 1.47872 * 121.08436 * 179.87643 * 15 14 12 17 17 O 1.21545 * 119.99451 * 180.80052 * 16 15 14 18 18 N 1.34772 * 120.00267 * 0.79535 * 16 15 14 19 19 C 1.46503 * 119.99594 * 180.02562 * 18 16 15 20 20 C 1.53004 * 109.46620 * 180.02562 * 19 18 16 21 21 C 1.50701 * 109.46489 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00975 * 359.97438 * 21 20 19 23 23 C 1.37885 * 119.99589 * 179.97438 * 21 20 19 24 24 N 1.31517 * 120.00024 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99961 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46992 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46961 * 120.00289 * 25 23 21 28 28 H 1.48498 * 109.47218 * 239.99948 * 25 23 21 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 34 34 H 1.08998 * 109.47430 * 59.99652 * 5 3 2 35 35 H 1.08996 * 109.47271 * 180.02562 * 5 3 2 36 36 H 1.09008 * 109.46731 * 299.99706 * 5 3 2 37 37 H 1.07995 * 125.70780 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.46866 * 89.99633 * 13 12 11 39 39 H 1.08999 * 109.46715 * 209.99689 * 13 12 11 40 40 H 1.09001 * 109.46777 * 330.00122 * 13 12 11 41 41 H 1.08003 * 120.32026 * 180.02562 * 14 12 11 42 42 H 0.96995 * 120.00016 * 0.02562 * 18 16 15 43 43 H 1.08997 * 109.46941 * 300.00155 * 19 18 16 44 44 H 1.08991 * 109.47034 * 60.00557 * 19 18 16 45 45 H 1.08993 * 109.46931 * 299.99927 * 20 19 18 46 46 H 1.09004 * 109.47027 * 60.00457 * 20 19 18 47 47 H 0.96996 * 119.99813 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 7 3.5000 1.4443 0.1203 7 7 4.3982 0.8505 -0.7743 8 6 5.6195 1.0417 -0.3640 9 6 5.5799 1.7806 0.8377 10 6 4.2231 2.0329 1.1253 11 7 3.8876 2.7221 2.2062 12 6 4.7892 3.1946 3.0383 13 6 4.3366 3.9697 4.2489 14 6 6.1458 2.9971 2.8308 15 6 6.5685 2.2726 1.7180 16 6 8.0057 2.0414 1.4585 17 8 8.3529 1.4191 0.4739 18 7 8.9306 2.5208 2.3135 19 6 10.3546 2.2921 2.0559 20 6 11.1839 2.9344 3.1698 21 6 12.6486 2.6997 2.9044 22 1 12.9573 2.1474 2.0293 23 6 13.5949 3.1903 3.7792 24 7 13.2191 3.8625 4.8453 25 14 15.4106 2.8988 3.4507 26 1 15.5679 2.1208 2.1957 27 1 16.1046 4.2044 3.3136 28 1 16.0026 2.1400 4.5816 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 0.5488 2.1253 -1.3968 35 1 1.9988 3.1541 -1.3075 36 1 2.0698 1.5875 -2.1492 37 1 6.5131 0.6930 -0.8603 38 1 4.1842 3.2845 5.0828 39 1 5.0973 4.7034 4.5157 40 1 3.4010 4.4816 4.0236 41 1 6.8677 3.3947 3.5288 42 1 8.6535 3.0172 3.0994 43 1 10.5513 1.2204 2.0288 44 1 10.6264 2.7358 1.0982 45 1 10.9871 4.0061 3.1973 46 1 10.9120 2.4903 4.1274 47 1 13.8848 4.2073 5.4608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342611172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:22 Heat of formation + Delta-G solvation = 26.680618 kcal Electronic energy + Delta-G solvation = -27382.544714 eV Core-core repulsion = 23565.422652 eV Total energy + Delta-G solvation = -3817.122062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.98221 -40.78271 -39.46960 -37.40821 -36.64834 -34.93728 -34.19908 -32.94670 -32.19397 -31.26151 -29.79598 -28.48025 -27.06891 -25.93945 -25.07947 -23.58747 -23.18359 -22.74542 -21.82789 -20.60774 -19.01073 -18.64029 -18.21644 -18.02351 -16.96006 -16.65182 -16.42827 -16.39235 -16.16940 -16.07060 -15.41645 -15.09088 -14.87767 -14.76590 -14.65971 -14.39844 -14.28314 -13.84797 -13.55735 -13.22687 -13.19256 -13.06692 -12.96054 -12.82500 -12.79099 -12.71391 -12.51692 -12.32612 -12.24949 -11.99228 -11.71716 -11.69666 -11.51754 -11.51201 -11.25933 -10.59166 -10.58848 -10.13482 -9.89069 -9.45972 -8.22432 -6.31758 -0.81829 0.00033 1.01483 1.25684 1.42110 1.43955 1.56106 1.76980 2.00331 2.43679 2.64754 2.94213 3.12835 3.19868 3.38347 3.60442 3.63700 3.77756 3.82769 3.99442 4.11530 4.30824 4.33850 4.37839 4.42946 4.50137 4.51050 4.55279 4.66867 4.74075 4.84573 4.86718 4.87481 4.91565 4.99480 5.02963 5.05145 5.15643 5.21194 5.30975 5.34399 5.44611 5.49077 5.61049 5.80033 5.80377 6.17672 6.28381 6.47579 6.73701 6.81252 7.07769 7.37244 8.89358 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.002209 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.225338 B =12670.690137 C =13564.118189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.161 3.839 4 H 0.112 0.888 5 C -0.155 4.155 6 N -0.383 5.383 7 N -0.247 5.247 8 C 0.084 3.916 9 C -0.211 4.211 10 C 0.298 3.702 11 N -0.498 5.498 12 C 0.197 3.803 13 C -0.103 4.103 14 C -0.168 4.168 15 C -0.015 4.015 16 C 0.550 3.450 17 O -0.565 6.565 18 N -0.701 5.701 19 C 0.140 3.860 20 C 0.022 3.978 21 C -0.545 4.545 22 H 0.059 0.941 23 C 0.008 3.992 24 N -0.924 5.924 25 Si 0.962 3.038 26 H -0.267 1.267 27 H -0.278 1.278 28 H -0.278 1.278 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.202 0.798 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.175 0.825 42 H 0.412 0.588 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.013 0.987 46 H 0.013 0.987 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.368 -1.292 -3.947 27.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.061 3.939 4 H 0.130 0.870 5 C -0.213 4.213 6 N -0.174 5.174 7 N -0.061 5.061 8 C -0.111 4.111 9 C -0.222 4.222 10 C 0.058 3.942 11 N -0.215 5.215 12 C 0.047 3.953 13 C -0.160 4.160 14 C -0.190 4.190 15 C -0.029 4.029 16 C 0.337 3.663 17 O -0.444 6.444 18 N -0.352 5.352 19 C 0.017 3.983 20 C -0.016 4.016 21 C -0.583 4.583 22 H 0.077 0.923 23 C -0.191 4.191 24 N -0.563 5.563 25 Si 0.787 3.213 26 H -0.191 1.191 27 H -0.203 1.203 28 H -0.204 1.204 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.219 0.781 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.192 0.808 42 H 0.250 0.750 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.031 0.969 46 H 0.031 0.969 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -28.867 -2.082 -5.364 29.435 hybrid contribution 2.621 0.191 0.608 2.697 sum -26.246 -1.891 -4.756 26.740 Atomic orbital electron populations 1.21774 0.92064 1.03169 1.03214 1.21821 0.98347 0.93976 1.02256 1.21691 0.71813 0.98972 1.01376 0.87028 1.22162 1.03818 0.99850 0.95469 1.49020 1.06673 1.44897 1.16765 1.76800 0.99443 1.16131 1.13749 1.24102 0.96001 0.96905 0.94080 1.19480 0.93915 1.08567 1.00218 1.19166 0.88441 0.95428 0.91156 1.66371 1.39530 1.12830 1.02750 1.21842 0.87923 0.91407 0.94118 1.20981 1.03998 0.99582 0.91465 1.22392 0.98205 1.00592 0.97833 1.19863 0.91552 0.96592 0.94861 1.18362 0.85658 0.79330 0.82945 1.90703 1.82368 1.41970 1.29398 1.46014 1.06744 1.55498 1.26958 1.21345 0.77825 0.99806 0.99366 1.19156 0.93725 0.95585 0.93129 1.21486 0.92335 1.35382 1.09107 0.92318 1.25822 1.03810 0.94673 0.94783 1.70047 1.35468 1.37357 1.13475 0.85443 0.79444 0.78055 0.78379 1.19079 1.20350 1.20350 0.91428 0.91639 0.90763 0.93060 0.91521 0.87520 0.93158 0.92135 0.78120 0.88048 0.87561 0.89483 0.80777 0.75017 0.92962 0.92942 0.96899 0.96916 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.67 71.98 0.70 -0.69 16 2 C -0.13 -1.99 5.66 30.59 0.17 -1.82 16 3 C 0.16 2.95 3.17 44.99 0.14 3.10 16 4 H 0.11 1.90 8.07 -2.38 -0.02 1.88 16 5 C -0.16 -2.33 9.20 71.98 0.66 -1.67 16 6 N -0.38 -9.90 3.33 -324.48 -1.08 -10.98 16 7 N -0.25 -7.06 12.29 -56.49 -0.69 -7.76 16 8 C 0.08 2.55 11.29 85.64 0.97 3.51 16 9 C -0.21 -6.45 6.02 -21.17 -0.13 -6.58 16 10 C 0.30 8.39 7.96 134.13 1.07 9.46 16 11 N -0.50 -12.26 10.25 -181.10 -1.86 -14.12 16 12 C 0.20 3.97 6.77 42.71 0.29 4.26 16 13 C -0.10 -1.15 10.14 71.24 0.72 -0.42 16 14 C -0.17 -3.65 9.22 22.63 0.21 -3.44 16 15 C -0.01 -0.43 5.93 -19.73 -0.12 -0.55 16 16 C 0.55 18.78 7.79 86.79 0.68 19.46 16 17 O -0.56 -22.69 15.14 -3.86 -0.06 -22.75 16 18 N -0.70 -23.27 5.51 -465.96 -2.57 -25.84 16 19 C 0.14 5.72 5.61 86.38 0.48 6.21 16 20 C 0.02 1.03 5.09 29.85 0.15 1.19 16 21 C -0.54 -29.54 9.11 25.60 0.23 -29.31 16 22 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 23 C 0.01 0.44 5.46 84.66 0.46 0.90 16 24 N -0.92 -52.65 13.29 21.45 0.28 -52.37 16 25 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 28 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.53 6.56 -2.39 -0.02 0.51 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.11 0.95 6.56 -2.39 -0.02 0.93 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.20 6.01 7.08 -2.91 -0.02 5.99 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 0.78 8.07 -2.39 -0.02 0.76 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.17 2.74 6.53 -2.91 -0.02 2.72 16 42 H 0.41 11.24 6.62 -92.71 -0.61 10.62 16 43 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.05 2.23 8.14 -2.39 -0.02 2.22 16 45 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -69.60 392.01 3.12 -66.48 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.37 Total: 18.84 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 6.69 Total: 3.61 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -5.92 Total: -111.06 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.06 Total: -22.75 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -69.60 3.12 -66.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342611172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.163 kcal (2) G-P(sol) polarization free energy of solvation -69.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds