Wall clock time and date at job start Tue Mar 31 2020 15:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47047 * 2 1 4 4 N 1.46501 * 109.47354 * 180.02562 * 3 2 1 5 5 C 1.36908 * 119.99793 * 89.99549 * 4 3 2 6 6 H 1.07997 * 119.99834 * 230.66325 * 5 4 3 7 7 C 1.39021 * 119.99786 * 50.94875 * 5 4 3 8 8 N 1.31386 * 119.99880 * 191.60461 * 7 5 4 9 9 Si 1.86804 * 120.00118 * 11.60259 * 7 5 4 10 10 H 1.48492 * 109.47201 * 5.70131 * 9 7 5 11 11 H 1.48503 * 109.47138 * 125.70721 * 9 7 5 12 12 H 1.48501 * 109.46990 * 245.70063 * 9 7 5 13 13 C 1.34770 * 119.99841 * 270.00419 * 4 3 2 14 14 O 1.21609 * 120.00301 * 357.85911 * 13 4 3 15 15 C 1.47585 * 120.00037 * 177.86154 * 13 4 3 16 16 C 1.40250 * 120.41557 * 40.55511 * 15 13 4 17 17 N 1.31173 * 121.36720 * 179.97438 * 16 15 13 18 18 C 1.32938 * 121.85669 * 0.02660 * 17 16 15 19 19 C 1.41070 * 120.21332 * 359.97438 * 18 17 16 20 20 C 1.45971 * 106.43619 * 180.02562 * 19 18 17 21 21 N 1.30205 * 107.58680 * 0.02562 * 20 19 18 22 22 N 1.36643 * 133.26345 * 179.97438 * 18 17 16 23 23 C 1.46503 * 125.33839 * 359.96256 * 22 18 17 24 24 C 1.53002 * 109.47168 * 89.99751 * 23 22 18 25 25 C 1.52997 * 109.46838 * 175.00127 * 24 23 22 26 26 C 1.52993 * 109.47111 * 294.99954 * 24 23 22 27 27 C 1.39572 * 120.42051 * 220.27885 * 15 13 4 28 28 H 1.08994 * 109.47371 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47381 * 300.00423 * 1 2 3 30 30 H 1.09002 * 109.47106 * 59.99831 * 1 2 3 31 31 H 1.08998 * 109.47254 * 240.00095 * 2 1 3 32 32 H 1.08992 * 109.47213 * 120.00079 * 2 1 3 33 33 H 1.09006 * 109.47336 * 60.00121 * 3 2 1 34 34 H 1.09002 * 109.47305 * 300.00047 * 3 2 1 35 35 H 0.97001 * 120.00091 * 359.97438 * 8 7 5 36 36 H 1.07998 * 119.31059 * 0.02562 * 16 15 13 37 37 H 1.07998 * 126.20884 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.47256 * 210.00203 * 23 22 18 39 39 H 1.09003 * 109.46864 * 330.00199 * 23 22 18 40 40 H 1.08998 * 109.47039 * 55.00029 * 24 23 22 41 41 H 1.08998 * 109.47386 * 60.00114 * 25 24 23 42 42 H 1.09000 * 109.47201 * 180.02562 * 25 24 23 43 43 H 1.09003 * 109.47138 * 300.00163 * 25 24 23 44 44 H 1.08998 * 109.47230 * 299.99958 * 26 24 23 45 45 H 1.08999 * 109.47216 * 60.00142 * 26 24 23 46 46 H 1.09000 * 109.47124 * 179.97438 * 26 24 23 47 47 H 1.07998 * 121.02140 * 359.97438 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1890 1.4427 -1.1866 6 1 4.9724 0.7193 -1.3582 7 6 3.8791 2.3777 -2.1676 8 7 4.3651 2.2427 -3.3808 9 14 2.7717 3.8261 -1.7609 10 1 2.4714 3.8266 -0.3067 11 1 3.4581 5.0916 -2.1251 12 1 1.5053 3.7115 -2.5279 13 6 4.1793 1.4423 1.1663 14 8 3.5724 1.4814 2.2193 15 6 5.6544 1.3947 1.1661 16 6 6.3888 2.1407 0.2328 17 7 7.7001 2.1126 0.2162 18 6 8.3972 1.3791 1.0783 19 6 7.7318 0.6005 2.0484 20 6 8.7711 -0.0710 2.8229 21 7 9.9223 0.2943 2.3362 22 7 9.7352 1.1781 1.2695 23 6 10.8057 1.7930 0.4807 24 6 11.2145 3.1202 1.1228 25 6 12.4144 3.7015 0.3725 26 6 10.0440 4.1029 1.0521 27 6 6.3363 0.6113 2.0985 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 4.9405 1.4908 -3.5918 36 1 5.8637 2.7515 -0.4866 37 1 8.6138 -0.7473 3.6500 38 1 11.6654 1.1237 0.4509 39 1 10.4510 1.9744 -0.5340 40 1 11.4847 2.9515 2.1652 41 1 12.1442 3.8702 -0.6699 42 1 12.7060 4.6468 0.8302 43 1 13.2484 3.0013 0.4228 44 1 9.7737 4.2717 0.0097 45 1 9.1891 3.6888 1.5866 46 1 10.3351 5.0483 1.5099 47 1 5.8010 0.0288 2.8337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346540497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:18 Heat of formation + Delta-G solvation = 55.480932 kcal Electronic energy + Delta-G solvation = -28845.982039 eV Core-core repulsion = 25030.108853 eV Total energy + Delta-G solvation = -3815.873187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.30469 -39.22482 -37.40127 -36.35426 -35.40843 -33.23581 -32.67740 -31.68214 -30.78029 -29.82300 -27.21707 -26.57723 -25.81223 -24.61008 -23.47678 -22.67890 -21.26107 -21.20731 -19.85385 -19.40406 -18.05540 -17.49313 -16.85143 -15.77078 -15.62977 -15.36140 -15.02478 -14.94925 -14.45366 -14.25713 -13.91990 -13.77561 -13.58973 -13.37875 -12.95809 -12.88590 -12.69162 -12.45238 -12.38107 -12.31955 -12.13640 -12.00777 -11.58241 -11.36878 -11.25557 -11.06872 -11.02296 -10.97336 -10.86213 -10.75266 -10.12456 -10.06906 -9.82005 -9.68056 -9.52041 -9.03987 -8.70911 -8.63664 -7.94410 -7.87645 -6.86205 -4.36256 1.14429 1.47492 2.32649 2.66698 3.16242 3.25204 3.39742 3.61285 4.11155 4.14326 4.38190 4.41276 4.57745 4.70302 4.78400 4.88500 4.90453 5.00346 5.27615 5.36579 5.42028 5.45948 5.52154 5.53674 5.57117 5.65443 5.67477 5.78109 5.82036 5.83121 5.94046 5.96861 6.03597 6.14398 6.19716 6.30119 6.31746 6.36712 6.38994 6.46318 6.64328 6.71236 6.84100 6.85050 7.16937 7.61238 7.65664 7.77699 8.24560 8.34312 8.84839 9.08824 9.60675 10.45165 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014835 B = 0.003860 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.926752 B = 7251.737135 C = 8446.503140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.112 3.888 4 N -0.456 5.456 5 C -0.425 4.425 6 H 0.083 0.917 7 C 0.032 3.968 8 N -0.865 5.865 9 Si 1.040 2.960 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.278 1.278 13 C 0.533 3.467 14 O -0.591 6.591 15 C -0.185 4.185 16 C 0.232 3.768 17 N -0.514 5.514 18 C 0.323 3.677 19 C -0.247 4.247 20 C 0.086 3.914 21 N -0.253 5.253 22 N -0.393 5.393 23 C 0.148 3.852 24 C -0.112 4.112 25 C -0.143 4.143 26 C -0.144 4.144 27 C 0.036 3.964 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.278 0.722 36 H 0.189 0.811 37 H 0.197 0.803 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.760 -0.698 6.599 10.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.010 4.010 4 N -0.175 5.175 5 C -0.552 4.552 6 H 0.101 0.899 7 C -0.179 4.179 8 N -0.496 5.496 9 Si 0.867 3.133 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.204 1.204 13 C 0.322 3.678 14 O -0.476 6.476 15 C -0.191 4.191 16 C 0.063 3.937 17 N -0.229 5.229 18 C 0.086 3.914 19 C -0.257 4.257 20 C -0.112 4.112 21 N -0.065 5.065 22 N -0.184 5.184 23 C 0.027 3.973 24 C -0.131 4.131 25 C -0.201 4.201 26 C -0.202 4.202 27 C 0.007 3.993 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.205 0.795 37 H 0.213 0.787 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.699 1.077 5.809 10.516 hybrid contribution -0.502 -1.990 0.851 2.222 sum 8.197 -0.914 6.660 10.601 Atomic orbital electron populations 1.21708 0.96212 1.01081 1.01531 1.21790 0.94936 0.98168 1.02223 1.21636 0.82448 0.96138 1.00826 1.43572 1.03964 1.64669 1.05305 1.20411 1.22278 1.19167 0.93372 0.89933 1.26501 0.98977 0.99909 0.92520 1.70759 1.28741 1.32014 1.18069 0.84028 0.76562 0.75993 0.76765 1.19502 1.20936 1.20403 1.18125 0.86053 0.79482 0.84177 1.90647 1.69762 1.55393 1.31799 1.20672 0.95604 1.03389 0.99468 1.23636 0.86259 0.91992 0.91833 1.66944 1.08832 1.22565 1.24520 1.19173 0.85931 0.93577 0.92763 1.20344 0.94670 1.07457 1.03187 1.24951 0.88029 0.99008 0.99222 1.76573 1.23442 1.06351 1.00122 1.48064 1.02424 1.39585 1.28277 1.21727 0.88433 0.93401 0.93751 1.21541 0.96439 0.94741 1.00427 1.21763 0.96814 1.00874 1.00651 1.21819 0.97403 0.98026 1.02915 1.20986 0.90598 0.93180 0.94553 0.93124 0.92913 0.92831 0.91551 0.92277 0.91113 0.92100 0.91115 0.79487 0.78676 0.89365 0.88630 0.90872 0.92134 0.92160 0.92551 0.91680 0.92680 0.93019 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.13 -2.42 6.26 -26.73 -0.17 -2.58 16 3 C 0.11 2.33 3.64 -4.04 -0.01 2.31 16 4 N -0.46 -10.36 1.93 -115.97 -0.22 -10.58 16 5 C -0.42 -10.17 6.38 -14.99 -0.10 -10.26 16 6 H 0.08 2.15 7.50 -52.49 -0.39 1.75 16 7 C 0.03 0.78 5.05 -17.45 -0.09 0.70 16 8 N -0.86 -22.69 13.69 55.50 0.76 -21.93 16 9 Si 1.04 22.52 25.77 -169.99 -4.38 18.14 16 10 H -0.27 -5.70 6.18 56.52 0.35 -5.35 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.53 12.11 7.31 -12.45 -0.09 12.02 16 14 O -0.59 -14.34 16.50 5.27 0.09 -14.26 16 15 C -0.18 -3.81 5.34 -104.83 -0.56 -4.37 16 16 C 0.23 4.77 9.26 -17.08 -0.16 4.61 16 17 N -0.51 -9.99 9.82 -12.01 -0.12 -10.11 16 18 C 0.32 5.83 6.37 -156.07 -0.99 4.84 16 19 C -0.25 -4.21 6.36 -105.20 -0.67 -4.88 16 20 C 0.09 1.20 12.30 -15.15 -0.19 1.02 16 21 N -0.25 -3.82 12.39 31.87 0.39 -3.42 16 22 N -0.39 -6.19 3.46 -60.38 -0.21 -6.40 16 23 C 0.15 1.89 5.84 -4.04 -0.02 1.86 16 24 C -0.11 -1.28 3.13 -90.62 -0.28 -1.56 16 25 C -0.14 -1.26 9.19 37.16 0.34 -0.92 16 26 C -0.14 -1.90 8.70 37.15 0.32 -1.58 16 27 C 0.04 0.65 9.84 -38.56 -0.38 0.27 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.47 7.39 -51.93 -0.38 1.08 16 34 H 0.06 1.25 4.46 -51.93 -0.23 1.02 16 35 H 0.28 7.28 8.73 -40.82 -0.36 6.93 16 36 H 0.19 4.10 6.01 -52.49 -0.32 3.78 16 37 H 0.20 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.87 6.19 -51.93 -0.32 0.55 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -28.40 381.09 -7.82 -36.21 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.19 Total: 6.92 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.68 Total: -0.32 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.60 Total: -52.45 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.26 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.38 Total: 18.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.40 -7.82 -36.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346540497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.695 kcal (2) G-P(sol) polarization free energy of solvation -28.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds