Wall clock time and date at job start Tue Mar 31 2020 15:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47047 * 2 1 4 4 N 1.46501 * 109.47354 * 180.02562 * 3 2 1 5 5 C 1.36908 * 119.99793 * 89.99549 * 4 3 2 6 6 H 1.07997 * 119.99834 * 230.66325 * 5 4 3 7 7 C 1.39021 * 119.99786 * 50.94875 * 5 4 3 8 8 N 1.31386 * 119.99880 * 191.60461 * 7 5 4 9 9 Si 1.86804 * 120.00118 * 11.60259 * 7 5 4 10 10 H 1.48492 * 109.47201 * 5.70131 * 9 7 5 11 11 H 1.48503 * 109.47138 * 125.70721 * 9 7 5 12 12 H 1.48501 * 109.46990 * 245.70063 * 9 7 5 13 13 C 1.34770 * 119.99841 * 270.00419 * 4 3 2 14 14 O 1.21609 * 120.00301 * 357.85911 * 13 4 3 15 15 C 1.47585 * 120.00037 * 177.86154 * 13 4 3 16 16 C 1.40250 * 120.41557 * 40.55511 * 15 13 4 17 17 N 1.31173 * 121.36720 * 179.97438 * 16 15 13 18 18 C 1.32938 * 121.85669 * 0.02660 * 17 16 15 19 19 C 1.41070 * 120.21332 * 359.97438 * 18 17 16 20 20 C 1.45971 * 106.43619 * 180.02562 * 19 18 17 21 21 N 1.30205 * 107.58680 * 0.02562 * 20 19 18 22 22 N 1.36643 * 133.26345 * 179.97438 * 18 17 16 23 23 C 1.46503 * 125.33839 * 359.96256 * 22 18 17 24 24 C 1.53002 * 109.47168 * 89.99751 * 23 22 18 25 25 C 1.52997 * 109.46838 * 175.00127 * 24 23 22 26 26 C 1.52993 * 109.47111 * 294.99954 * 24 23 22 27 27 C 1.39572 * 120.42051 * 220.27885 * 15 13 4 28 28 H 1.08994 * 109.47371 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47381 * 300.00423 * 1 2 3 30 30 H 1.09002 * 109.47106 * 59.99831 * 1 2 3 31 31 H 1.08998 * 109.47254 * 240.00095 * 2 1 3 32 32 H 1.08992 * 109.47213 * 120.00079 * 2 1 3 33 33 H 1.09006 * 109.47336 * 60.00121 * 3 2 1 34 34 H 1.09002 * 109.47305 * 300.00047 * 3 2 1 35 35 H 0.97001 * 120.00091 * 359.97438 * 8 7 5 36 36 H 1.07998 * 119.31059 * 0.02562 * 16 15 13 37 37 H 1.07998 * 126.20884 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.47256 * 210.00203 * 23 22 18 39 39 H 1.09003 * 109.46864 * 330.00199 * 23 22 18 40 40 H 1.08998 * 109.47039 * 55.00029 * 24 23 22 41 41 H 1.08998 * 109.47386 * 60.00114 * 25 24 23 42 42 H 1.09000 * 109.47201 * 180.02562 * 25 24 23 43 43 H 1.09003 * 109.47138 * 300.00163 * 25 24 23 44 44 H 1.08998 * 109.47230 * 299.99958 * 26 24 23 45 45 H 1.08999 * 109.47216 * 60.00142 * 26 24 23 46 46 H 1.09000 * 109.47124 * 179.97438 * 26 24 23 47 47 H 1.07998 * 121.02140 * 359.97438 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1890 1.4427 -1.1866 6 1 4.9724 0.7193 -1.3582 7 6 3.8791 2.3777 -2.1676 8 7 4.3651 2.2427 -3.3808 9 14 2.7717 3.8261 -1.7609 10 1 2.4714 3.8266 -0.3067 11 1 3.4581 5.0916 -2.1251 12 1 1.5053 3.7115 -2.5279 13 6 4.1793 1.4423 1.1663 14 8 3.5724 1.4814 2.2193 15 6 5.6544 1.3947 1.1661 16 6 6.3888 2.1407 0.2328 17 7 7.7001 2.1126 0.2162 18 6 8.3972 1.3791 1.0783 19 6 7.7318 0.6005 2.0484 20 6 8.7711 -0.0710 2.8229 21 7 9.9223 0.2943 2.3362 22 7 9.7352 1.1781 1.2695 23 6 10.8057 1.7930 0.4807 24 6 11.2145 3.1202 1.1228 25 6 12.4144 3.7015 0.3725 26 6 10.0440 4.1029 1.0521 27 6 6.3363 0.6113 2.0985 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 4.9405 1.4908 -3.5918 36 1 5.8637 2.7515 -0.4866 37 1 8.6138 -0.7473 3.6500 38 1 11.6654 1.1237 0.4509 39 1 10.4510 1.9744 -0.5340 40 1 11.4847 2.9515 2.1652 41 1 12.1442 3.8702 -0.6699 42 1 12.7060 4.6468 0.8302 43 1 13.2484 3.0013 0.4228 44 1 9.7737 4.2717 0.0097 45 1 9.1891 3.6888 1.5866 46 1 10.3351 5.0483 1.5099 47 1 5.8010 0.0288 2.8337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346540497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:16 Heat of formation + Delta-G solvation = 40.535429 kcal Electronic energy + Delta-G solvation = -28846.630125 eV Core-core repulsion = 25030.108853 eV Total energy + Delta-G solvation = -3816.521272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.64818 -40.91771 -38.84864 -37.39846 -37.19036 -34.87443 -34.03507 -33.43484 -32.06716 -31.24737 -28.21603 -27.80757 -27.18132 -26.40978 -24.90774 -24.16790 -22.68564 -22.37036 -21.20805 -20.90880 -19.77759 -18.79656 -18.48915 -17.41568 -17.09122 -16.69879 -16.54408 -16.19610 -16.00375 -15.62063 -15.41136 -15.17511 -14.85125 -14.75611 -14.37313 -14.33684 -14.07834 -13.96903 -13.91490 -13.54620 -13.19812 -13.13130 -12.91961 -12.82964 -12.53876 -12.37880 -12.32119 -12.21324 -12.03797 -11.75796 -11.69401 -11.56169 -11.46801 -11.40450 -11.22678 -10.79814 -10.36012 -10.02569 -9.79357 -9.28712 -8.82506 -6.32157 -0.24720 -0.04164 1.10905 1.39755 1.43402 1.47398 1.66679 1.90378 2.31397 2.53267 2.77303 2.99125 3.18861 3.26698 3.63270 3.71934 3.79986 3.91328 3.94684 4.01222 4.04713 4.18349 4.26912 4.38990 4.43798 4.45379 4.51150 4.61290 4.63415 4.65211 4.72596 4.74286 4.86065 4.96123 4.98268 5.09122 5.11171 5.14156 5.19155 5.26945 5.29775 5.35628 5.39926 5.48772 5.72051 5.80176 5.85306 6.26751 6.38882 6.87212 6.94952 7.24838 7.75008 8.47253 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014835 B = 0.003860 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.926752 B = 7251.737135 C = 8446.503140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.105 3.895 4 N -0.465 5.465 5 C -0.404 4.404 6 H 0.055 0.945 7 C 0.003 3.997 8 N -0.893 5.893 9 Si 1.069 2.931 10 H -0.264 1.264 11 H -0.283 1.283 12 H -0.261 1.261 13 C 0.533 3.467 14 O -0.609 6.609 15 C -0.215 4.215 16 C 0.223 3.777 17 N -0.523 5.523 18 C 0.310 3.690 19 C -0.254 4.254 20 C 0.106 3.894 21 N -0.256 5.256 22 N -0.394 5.394 23 C 0.140 3.860 24 C -0.103 4.103 25 C -0.137 4.137 26 C -0.140 4.140 27 C 0.051 3.949 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.267 0.733 36 H 0.166 0.834 37 H 0.245 0.755 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.023 0.977 46 H 0.064 0.936 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.539 -1.324 8.290 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C -0.017 4.017 4 N -0.185 5.185 5 C -0.532 4.532 6 H 0.073 0.927 7 C -0.203 4.203 8 N -0.526 5.526 9 Si 0.891 3.109 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.186 1.186 13 C 0.323 3.677 14 O -0.495 6.495 15 C -0.222 4.222 16 C 0.054 3.946 17 N -0.239 5.239 18 C 0.071 3.929 19 C -0.264 4.264 20 C -0.092 4.092 21 N -0.068 5.068 22 N -0.184 5.184 23 C 0.020 3.980 24 C -0.122 4.122 25 C -0.195 4.195 26 C -0.198 4.198 27 C 0.022 3.978 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.183 0.817 37 H 0.261 0.739 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.083 0.917 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.497 0.442 7.492 12.105 hybrid contribution -0.573 -1.861 0.443 1.997 sum 8.924 -1.419 7.935 12.026 Atomic orbital electron populations 1.21677 0.93088 1.02760 1.02379 1.21716 0.97629 0.96034 1.01066 1.21803 0.81175 0.97933 1.00820 1.43690 1.04951 1.64942 1.04874 1.20035 1.21543 1.18012 0.93595 0.92714 1.27315 0.99542 1.01331 0.92066 1.70841 1.30360 1.32186 1.19198 0.83667 0.76158 0.73959 0.77120 1.18874 1.20924 1.18640 1.18398 0.86942 0.78602 0.83801 1.90613 1.70471 1.56250 1.32159 1.20571 0.94590 1.05675 1.01328 1.23213 0.86849 0.92529 0.92038 1.66830 1.08372 1.23321 1.25334 1.19436 0.87233 0.93484 0.92791 1.20650 0.94738 1.07552 1.03495 1.25696 0.86069 0.98208 0.99229 1.76603 1.23924 1.06300 0.99943 1.48397 1.01985 1.39510 1.28500 1.22006 0.88311 0.94540 0.93177 1.21476 0.96596 0.93551 1.00596 1.21729 0.95945 1.01575 1.00245 1.21772 0.97121 0.99096 1.01771 1.21179 0.91160 0.91925 0.93563 0.91076 0.91907 0.92147 0.92949 0.93127 0.91081 0.91969 0.92318 0.81702 0.73900 0.87070 0.89495 0.91040 0.92125 0.91235 0.90856 0.92786 0.95746 0.91657 0.82233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.14 16 2 C -0.13 -4.52 6.26 30.59 0.19 -4.33 16 3 C 0.10 4.33 3.64 86.38 0.31 4.65 16 4 N -0.47 -21.59 1.93 -639.09 -1.23 -22.82 16 5 C -0.40 -20.09 6.38 84.09 0.54 -19.56 16 6 H 0.06 3.02 7.50 -2.91 -0.02 3.00 16 7 C 0.00 0.16 5.05 84.95 0.43 0.59 16 8 N -0.89 -48.51 13.69 21.68 0.30 -48.21 16 9 Si 1.07 45.88 25.77 68.60 1.77 47.64 16 10 H -0.26 -10.99 6.18 99.48 0.61 -10.37 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 13 C 0.53 24.64 7.31 86.71 0.63 25.27 16 14 O -0.61 -29.59 16.50 -4.06 -0.07 -29.66 16 15 C -0.21 -9.07 5.34 -20.00 -0.11 -9.18 16 16 C 0.22 9.62 9.26 85.28 0.79 10.41 16 17 N -0.52 -21.11 9.82 -191.90 -1.88 -23.00 16 18 C 0.31 11.13 6.37 134.17 0.85 11.98 16 19 C -0.25 -8.32 6.36 -20.24 -0.13 -8.45 16 20 C 0.11 2.62 12.30 86.94 1.07 3.69 16 21 N -0.26 -7.05 12.39 -53.08 -0.66 -7.71 16 22 N -0.39 -11.94 3.46 -344.94 -1.19 -13.13 16 23 C 0.14 3.39 5.84 86.38 0.50 3.89 16 24 C -0.10 -2.20 3.13 -10.80 -0.03 -2.23 16 25 C -0.14 -2.12 9.19 71.98 0.66 -1.45 16 26 C -0.14 -3.68 8.70 71.98 0.63 -3.05 16 27 C 0.05 1.79 9.84 22.93 0.23 2.01 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 2.92 7.39 -2.38 -0.02 2.90 16 34 H 0.06 2.53 4.46 -2.39 -0.01 2.52 16 35 H 0.27 14.69 8.73 -92.71 -0.81 13.88 16 36 H 0.17 7.75 6.01 -2.91 -0.02 7.73 16 37 H 0.25 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.02 0.77 6.19 -2.39 -0.01 0.76 16 46 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.16 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -63.23 381.09 5.15 -58.08 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.84 Total: 27.70 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 7.28 Total: 11.10 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -4.67 Total: -114.87 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.07 Total: -29.66 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.77 Total: 47.64 kcal Total: -63.23 5.15 -58.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346540497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.615 kcal (2) G-P(sol) polarization free energy of solvation -63.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds