Wall clock time and date at job start Tue Mar 31 2020 15:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99750 * 2 1 4 4 N 1.46493 * 109.47076 * 124.99649 * 3 2 1 5 5 C 1.46497 * 120.00259 * 263.08260 * 4 3 2 6 6 C 1.50698 * 109.47187 * 269.99853 * 5 4 3 7 7 H 1.07998 * 119.99876 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99955 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99953 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47763 * 89.99454 * 10 8 6 12 12 H 1.48508 * 109.47329 * 210.00027 * 10 8 6 13 13 H 1.48507 * 109.46915 * 329.99305 * 10 8 6 14 14 C 1.34784 * 119.99746 * 83.08482 * 4 3 2 15 15 O 1.21472 * 119.99605 * 183.55744 * 14 4 3 16 16 C 1.48465 * 119.99950 * 3.55427 * 14 4 3 17 17 C 1.39503 * 120.50614 * 173.31055 * 16 14 4 18 18 C 1.38770 * 118.42836 * 180.02562 * 17 16 14 19 19 N 1.32134 * 119.24346 * 359.97438 * 18 17 16 20 20 C 1.32569 * 120.96257 * 0.02562 * 19 18 17 21 21 N 1.38426 * 119.14207 * 179.97438 * 20 19 18 22 22 C 1.46847 * 111.00093 * 0.02562 * 21 20 19 23 23 C 1.53038 * 109.52842 * 185.83868 * 22 21 20 24 24 C 1.53123 * 109.27465 * 300.82414 * 23 22 21 25 25 C 1.53113 * 109.21450 * 57.61745 * 24 23 22 26 26 C 1.46847 * 111.00278 * 124.21105 * 21 20 19 27 27 N 1.32290 * 121.72002 * 0.25547 * 20 19 18 28 28 H 1.07997 * 120.00513 * 359.97438 * 1 2 3 29 29 H 1.08008 * 119.99795 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00114 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46699 * 4.99582 * 3 2 1 32 32 H 1.08996 * 109.46941 * 245.00134 * 3 2 1 33 33 H 1.08994 * 109.47413 * 30.00360 * 5 4 3 34 34 H 1.09001 * 109.47052 * 150.00142 * 5 4 3 35 35 H 0.97003 * 119.99813 * 179.97438 * 9 8 6 36 36 H 1.08006 * 120.78370 * 0.02562 * 17 16 14 37 37 H 1.07998 * 120.37943 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.46230 * 65.82208 * 22 21 20 39 39 H 1.09003 * 109.45271 * 305.85160 * 22 21 20 40 40 H 1.08996 * 109.50498 * 180.87891 * 23 22 21 41 41 H 1.09000 * 109.50098 * 60.75902 * 23 22 21 42 42 H 1.09000 * 109.51925 * 177.55798 * 24 23 22 43 43 H 1.09006 * 109.52197 * 297.67819 * 24 23 22 44 44 H 1.09004 * 109.50416 * 62.31977 * 25 24 23 45 45 H 1.09004 * 109.50314 * 182.43639 * 25 24 23 46 46 H 1.09009 * 109.45968 * 294.17978 * 26 21 20 47 47 H 1.09002 * 109.46164 * 54.15326 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.6120 2.0006 2.3778 6 6 3.0339 3.4463 2.3219 7 1 3.5357 3.8288 1.4455 8 6 2.7792 4.2805 3.3897 9 7 2.1676 3.8147 4.4568 10 14 3.3015 6.0726 3.3202 11 1 2.2024 6.8865 2.7417 12 1 3.6044 6.5536 4.6922 13 1 4.5132 6.2024 2.4715 14 6 4.2006 0.7416 1.0256 15 8 4.9461 0.7074 1.9841 16 6 4.6190 0.1330 -0.2623 17 6 5.9149 -0.3566 -0.4263 18 6 6.2600 -0.9163 -1.6484 19 7 5.3576 -0.9687 -2.6121 20 6 4.1333 -0.4951 -2.4267 21 7 3.2179 -0.5689 -3.4624 22 6 3.8138 -1.1990 -4.6475 23 6 2.8251 -1.1324 -5.8138 24 6 1.5332 -1.8557 -5.4232 25 6 0.9583 -1.2124 -4.1583 26 6 2.0018 -1.2757 -3.0407 27 7 3.7652 0.0511 -1.2794 28 1 -0.5401 0.9352 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3584 2.1316 0.0895 32 1 2.6212 1.4027 -0.9314 33 1 1.5311 1.9422 2.5052 34 1 3.1039 1.5109 3.2182 35 1 1.9888 4.4015 5.2082 36 1 6.6328 -0.3014 0.3788 37 1 7.2544 -1.3054 -1.8096 38 1 4.0456 -2.2409 -4.4270 39 1 4.7293 -0.6724 -4.9170 40 1 3.2616 -1.6140 -6.6888 41 1 2.6035 -0.0903 -6.0439 42 1 0.8102 -1.7734 -6.2348 43 1 1.7480 -2.9071 -5.2319 44 1 0.7064 -0.1716 -4.3617 45 1 0.0618 -1.7511 -3.8514 46 1 2.2425 -2.3174 -2.8279 47 1 1.6010 -0.8050 -2.1430 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359439719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:52 Heat of formation + Delta-G solvation = 68.744565 kcal Electronic energy + Delta-G solvation = -29191.740258 eV Core-core repulsion = 25376.442226 eV Total energy + Delta-G solvation = -3815.298032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.46616 -39.31699 -38.41603 -35.81647 -34.14554 -33.88282 -33.11917 -32.06452 -31.06815 -30.52334 -27.83004 -25.95578 -25.30587 -24.90348 -23.51777 -22.84141 -22.16253 -20.21855 -19.99372 -19.12091 -17.74947 -17.45284 -16.50951 -16.26204 -15.72742 -15.53636 -15.29784 -14.87954 -14.77511 -14.56785 -14.38875 -14.23876 -13.90540 -13.65710 -13.51908 -13.41106 -12.85055 -12.76531 -12.38361 -12.21486 -11.75329 -11.48174 -11.30851 -11.15192 -11.07902 -10.92102 -10.86439 -10.76494 -10.66366 -10.65273 -10.53088 -10.20135 -10.16256 -9.77616 -9.55802 -9.09678 -8.64729 -8.47376 -8.43927 -7.71259 -6.05686 -4.10835 0.68910 0.96544 2.58906 2.93663 3.24467 3.30579 3.36913 3.41453 3.65097 4.01425 4.07055 4.41739 4.45859 4.59378 4.63037 4.71011 4.76153 4.94919 5.03561 5.10844 5.21107 5.28837 5.32921 5.38147 5.38773 5.47305 5.53832 5.57673 5.66351 5.71003 5.75526 5.87386 5.90689 6.02106 6.07652 6.14337 6.25246 6.47696 6.52274 6.72127 6.95651 6.96180 7.08940 7.14584 7.39852 7.51307 7.89833 8.01886 8.19552 8.30028 8.77840 8.96892 9.54105 11.02375 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.003571 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.294287 B = 7839.099222 C = 8651.907733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C 0.125 3.875 4 N -0.563 5.563 5 C 0.244 3.756 6 C -0.529 4.529 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.552 3.448 15 O -0.526 6.526 16 C 0.170 3.830 17 C -0.207 4.207 18 C 0.170 3.830 19 N -0.547 5.547 20 C 0.481 3.519 21 N -0.456 5.456 22 C 0.071 3.929 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.117 4.117 26 C 0.057 3.943 27 N -0.494 5.494 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.158 0.842 37 H 0.173 0.827 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.040 0.960 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.014 -13.215 -19.630 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.153 4.153 3 C 0.002 3.998 4 N -0.291 5.291 5 C 0.125 3.875 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.336 3.664 15 O -0.402 6.402 16 C 0.021 3.979 17 C -0.231 4.231 18 C 0.003 3.997 19 N -0.268 5.268 20 C 0.125 3.875 21 N -0.176 5.176 22 C -0.056 4.056 23 C -0.158 4.158 24 C -0.162 4.162 25 C -0.155 4.155 26 C -0.069 4.069 27 N -0.215 5.215 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.176 0.824 37 H 0.190 0.810 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.058 0.942 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.544 -12.711 -19.792 23.529 hybrid contribution 1.097 0.416 0.835 1.440 sum 0.553 -12.295 -18.957 22.602 Atomic orbital electron populations 1.23748 0.95776 1.01453 1.02884 1.23184 0.95592 0.98958 0.97592 1.21170 0.92879 0.94435 0.91309 1.48182 1.13324 1.51056 1.16577 1.19430 0.96260 0.91844 0.79942 1.21410 1.38754 0.94226 1.02347 0.92355 1.24921 0.95019 0.98968 0.95055 1.69938 1.41461 1.36006 1.05772 0.86483 0.78978 0.84517 0.77376 1.20577 1.21056 1.19874 1.17743 0.83067 0.80100 0.85498 1.90768 1.52659 1.59452 1.37369 1.22065 0.90472 0.92204 0.93174 1.22791 0.98048 1.01744 1.00525 1.23070 0.98159 0.91055 0.87442 1.68227 1.03388 1.20348 1.34812 1.21174 0.88277 0.89359 0.88708 1.58370 1.04895 1.51319 1.02998 1.22021 0.97493 0.98124 0.87988 1.21675 0.95350 1.01793 0.97001 1.21633 0.97269 0.99395 0.97901 1.21622 0.97247 1.02383 0.94239 1.22419 0.88132 0.96118 1.00245 1.68690 1.36216 1.16600 1.00016 0.88414 0.89145 0.88588 0.90372 0.86586 0.94457 0.93569 0.92661 0.82390 0.81009 0.93204 0.89455 0.90982 0.90874 0.91522 0.92190 0.90491 0.90771 0.94191 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.72 14.31 29.01 0.42 -2.31 16 2 C -0.13 -2.07 6.43 -36.03 -0.23 -2.30 16 3 C 0.13 2.27 5.45 -5.20 -0.03 2.24 16 4 N -0.56 -12.41 2.46 -177.33 -0.44 -12.84 16 5 C 0.24 6.42 5.16 -5.20 -0.03 6.40 16 6 C -0.53 -15.02 9.39 -34.44 -0.32 -15.35 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 10 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.55 11.96 7.61 -12.04 -0.09 11.87 16 15 O -0.53 -13.06 16.00 5.39 0.09 -12.98 16 16 C 0.17 2.95 6.65 -82.65 -0.55 2.40 16 17 C -0.21 -2.96 9.71 -38.91 -0.38 -3.33 16 18 C 0.17 1.99 11.30 -17.22 -0.19 1.80 16 19 N -0.55 -7.17 8.65 -13.94 -0.12 -7.29 16 20 C 0.48 6.80 7.17 -322.94 -2.31 4.48 16 21 N -0.46 -5.50 4.72 -175.45 -0.83 -6.33 16 22 C 0.07 0.70 4.63 -3.83 -0.02 0.68 16 23 C -0.12 -0.92 6.10 -26.65 -0.16 -1.08 16 24 C -0.12 -0.89 6.00 -26.61 -0.16 -1.05 16 25 C -0.12 -0.97 6.10 -26.65 -0.16 -1.14 16 26 C 0.06 0.61 5.33 -3.83 -0.02 0.59 16 27 N -0.49 -7.79 4.24 -10.49 -0.04 -7.84 16 28 H 0.10 1.32 7.84 -52.49 -0.41 0.90 16 29 H 0.09 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.10 1.50 7.45 -52.49 -0.39 1.11 16 31 H 0.08 1.45 7.67 -51.93 -0.40 1.06 16 32 H 0.12 2.06 5.20 -52.12 -0.27 1.79 16 33 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 34 H 0.05 1.36 7.37 -51.93 -0.38 0.97 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.16 2.14 7.74 -52.48 -0.41 1.74 16 37 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 39 H 0.09 0.92 7.68 -51.93 -0.40 0.52 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.04 0.43 8.14 -51.92 -0.42 0.00 16 47 H 0.11 1.28 4.75 -51.93 -0.25 1.03 16 LS Contribution 378.10 15.07 5.70 5.70 Total: -1.00 -32.29 378.10 -11.37 -43.65 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.10 Total: 1.17 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -4.34 Total: 5.59 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.69 Total: -60.00 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.29 -11.37 -43.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359439719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.399 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds