Wall clock time and date at job start Tue Mar 31 2020 15:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99750 * 2 1 4 4 N 1.46493 * 109.47076 * 124.99649 * 3 2 1 5 5 C 1.46497 * 120.00259 * 263.08260 * 4 3 2 6 6 C 1.50698 * 109.47187 * 269.99853 * 5 4 3 7 7 H 1.07998 * 119.99876 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99955 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99953 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47763 * 89.99454 * 10 8 6 12 12 H 1.48508 * 109.47329 * 210.00027 * 10 8 6 13 13 H 1.48507 * 109.46915 * 329.99305 * 10 8 6 14 14 C 1.34784 * 119.99746 * 83.08482 * 4 3 2 15 15 O 1.21472 * 119.99605 * 183.55744 * 14 4 3 16 16 C 1.48465 * 119.99950 * 3.55427 * 14 4 3 17 17 C 1.39503 * 120.50614 * 173.31055 * 16 14 4 18 18 C 1.38770 * 118.42836 * 180.02562 * 17 16 14 19 19 N 1.32134 * 119.24346 * 359.97438 * 18 17 16 20 20 C 1.32569 * 120.96257 * 0.02562 * 19 18 17 21 21 N 1.38426 * 119.14207 * 179.97438 * 20 19 18 22 22 C 1.46847 * 111.00093 * 0.02562 * 21 20 19 23 23 C 1.53038 * 109.52842 * 185.83868 * 22 21 20 24 24 C 1.53123 * 109.27465 * 300.82414 * 23 22 21 25 25 C 1.53113 * 109.21450 * 57.61745 * 24 23 22 26 26 C 1.46847 * 111.00278 * 124.21105 * 21 20 19 27 27 N 1.32290 * 121.72002 * 0.25547 * 20 19 18 28 28 H 1.07997 * 120.00513 * 359.97438 * 1 2 3 29 29 H 1.08008 * 119.99795 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00114 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46699 * 4.99582 * 3 2 1 32 32 H 1.08996 * 109.46941 * 245.00134 * 3 2 1 33 33 H 1.08994 * 109.47413 * 30.00360 * 5 4 3 34 34 H 1.09001 * 109.47052 * 150.00142 * 5 4 3 35 35 H 0.97003 * 119.99813 * 179.97438 * 9 8 6 36 36 H 1.08006 * 120.78370 * 0.02562 * 17 16 14 37 37 H 1.07998 * 120.37943 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.46230 * 65.82208 * 22 21 20 39 39 H 1.09003 * 109.45271 * 305.85160 * 22 21 20 40 40 H 1.08996 * 109.50498 * 180.87891 * 23 22 21 41 41 H 1.09000 * 109.50098 * 60.75902 * 23 22 21 42 42 H 1.09000 * 109.51925 * 177.55798 * 24 23 22 43 43 H 1.09006 * 109.52197 * 297.67819 * 24 23 22 44 44 H 1.09004 * 109.50416 * 62.31977 * 25 24 23 45 45 H 1.09004 * 109.50314 * 182.43639 * 25 24 23 46 46 H 1.09009 * 109.45968 * 294.17978 * 26 21 20 47 47 H 1.09002 * 109.46164 * 54.15326 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.6120 2.0006 2.3778 6 6 3.0339 3.4463 2.3219 7 1 3.5357 3.8288 1.4455 8 6 2.7792 4.2805 3.3897 9 7 2.1676 3.8147 4.4568 10 14 3.3015 6.0726 3.3202 11 1 2.2024 6.8865 2.7417 12 1 3.6044 6.5536 4.6922 13 1 4.5132 6.2024 2.4715 14 6 4.2006 0.7416 1.0256 15 8 4.9461 0.7074 1.9841 16 6 4.6190 0.1330 -0.2623 17 6 5.9149 -0.3566 -0.4263 18 6 6.2600 -0.9163 -1.6484 19 7 5.3576 -0.9687 -2.6121 20 6 4.1333 -0.4951 -2.4267 21 7 3.2179 -0.5689 -3.4624 22 6 3.8138 -1.1990 -4.6475 23 6 2.8251 -1.1324 -5.8138 24 6 1.5332 -1.8557 -5.4232 25 6 0.9583 -1.2124 -4.1583 26 6 2.0018 -1.2757 -3.0407 27 7 3.7652 0.0511 -1.2794 28 1 -0.5401 0.9352 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3584 2.1316 0.0895 32 1 2.6212 1.4027 -0.9314 33 1 1.5311 1.9422 2.5052 34 1 3.1039 1.5109 3.2182 35 1 1.9888 4.4015 5.2082 36 1 6.6328 -0.3014 0.3788 37 1 7.2544 -1.3054 -1.8096 38 1 4.0456 -2.2409 -4.4270 39 1 4.7293 -0.6724 -4.9170 40 1 3.2616 -1.6140 -6.6888 41 1 2.6035 -0.0903 -6.0439 42 1 0.8102 -1.7734 -6.2348 43 1 1.7480 -2.9071 -5.2319 44 1 0.7064 -0.1716 -4.3617 45 1 0.0618 -1.7511 -3.8514 46 1 2.2425 -2.3174 -2.8279 47 1 1.6010 -0.8050 -2.1430 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359439719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:51 Heat of formation + Delta-G solvation = 51.473553 kcal Electronic energy + Delta-G solvation = -29192.489185 eV Core-core repulsion = 25376.442226 eV Total energy + Delta-G solvation = -3816.046960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.59508 -40.71417 -39.51648 -37.44276 -35.41802 -34.96209 -34.70562 -33.76273 -31.82695 -31.56244 -29.79266 -27.32852 -26.57997 -26.09259 -24.93480 -23.74820 -23.46544 -21.50749 -20.93587 -20.33395 -18.92551 -18.81358 -18.60284 -17.48323 -17.18980 -16.85610 -16.60236 -16.16545 -16.02347 -15.94240 -15.54195 -15.31970 -14.91016 -14.69832 -14.58059 -14.33625 -14.22150 -14.21400 -14.04742 -13.36998 -13.15755 -13.07699 -12.98168 -12.60919 -12.30319 -12.23652 -12.19959 -12.02779 -11.85602 -11.74438 -11.68597 -11.48523 -11.36470 -11.30285 -11.10592 -10.66442 -10.36222 -9.92355 -9.54225 -9.43820 -8.25144 -6.40408 -0.56255 -0.07962 1.34390 1.36757 1.38640 1.49277 1.70869 1.96478 2.19174 2.38713 2.73552 2.95181 3.04820 3.38097 3.56810 3.80763 3.92557 3.96240 4.02368 4.09782 4.18231 4.25473 4.27837 4.36055 4.56431 4.61934 4.62693 4.66597 4.80665 4.91756 4.93890 4.96960 5.00964 5.04496 5.09193 5.16408 5.21828 5.24552 5.33124 5.45838 5.48688 5.60955 5.69819 5.72331 5.74976 5.96300 6.00413 6.09364 6.53081 6.67002 6.92196 7.11870 7.31883 8.82401 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.003571 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.294287 B = 7839.099222 C = 8651.907733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.149 4.149 3 C 0.131 3.869 4 N -0.571 5.571 5 C 0.262 3.738 6 C -0.548 4.548 7 H 0.051 0.949 8 C 0.013 3.987 9 N -0.924 5.924 10 Si 0.969 3.031 11 H -0.264 1.264 12 H -0.277 1.277 13 H -0.274 1.274 14 C 0.547 3.453 15 O -0.572 6.572 16 C 0.147 3.853 17 C -0.206 4.206 18 C 0.192 3.808 19 N -0.543 5.543 20 C 0.474 3.526 21 N -0.462 5.462 22 C 0.072 3.928 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.113 4.113 26 C 0.056 3.944 27 N -0.503 5.503 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.121 0.879 33 H 0.026 0.974 34 H 0.006 0.994 35 H 0.269 0.731 36 H 0.162 0.838 37 H 0.223 0.777 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.040 0.960 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.044 -13.876 -22.435 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.169 4.169 3 C 0.009 3.991 4 N -0.299 5.299 5 C 0.141 3.859 6 C -0.586 4.586 7 H 0.069 0.931 8 C -0.187 4.187 9 N -0.563 5.563 10 Si 0.793 3.207 11 H -0.189 1.189 12 H -0.202 1.202 13 H -0.199 1.199 14 C 0.333 3.667 15 O -0.451 6.451 16 C 0.000 4.000 17 C -0.231 4.231 18 C 0.023 3.977 19 N -0.263 5.263 20 C 0.118 3.882 21 N -0.182 5.182 22 C -0.055 4.055 23 C -0.153 4.153 24 C -0.158 4.158 25 C -0.151 4.151 26 C -0.069 4.069 27 N -0.225 5.225 28 H 0.117 0.883 29 H 0.136 0.864 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.138 0.862 33 H 0.044 0.956 34 H 0.024 0.976 35 H 0.078 0.922 36 H 0.180 0.820 37 H 0.239 0.761 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.058 0.942 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.560 -13.385 -22.649 26.314 hybrid contribution 1.071 0.543 1.636 2.030 sum 0.510 -12.842 -21.012 24.631 Atomic orbital electron populations 1.23972 0.95026 1.02818 0.99635 1.22898 0.96070 0.97401 1.00492 1.21259 0.92224 0.95695 0.89921 1.48168 1.14578 1.50919 1.16189 1.18875 0.94822 0.91197 0.80980 1.21630 1.39157 0.95356 1.02454 0.93107 1.25825 0.94730 1.03687 0.94463 1.70048 1.42088 1.37799 1.06411 0.85401 0.78830 0.78839 0.77661 1.18865 1.20247 1.19857 1.18360 0.82196 0.79360 0.86823 1.90715 1.53744 1.61202 1.39452 1.21398 0.92145 0.94578 0.91927 1.22947 0.96714 1.01528 1.01928 1.23814 0.99517 0.88796 0.85560 1.68383 1.03155 1.19844 1.34902 1.21486 0.89140 0.89044 0.88481 1.58464 1.05070 1.51725 1.02972 1.22105 0.97890 0.97706 0.87770 1.21674 0.95188 1.01830 0.96631 1.21627 0.97216 0.99362 0.97631 1.21628 0.97023 1.02390 0.94063 1.22455 0.88125 0.95616 1.00735 1.68474 1.36249 1.17448 1.00361 0.88264 0.86387 0.88736 0.91540 0.86160 0.95583 0.97635 0.92215 0.82037 0.76105 0.93138 0.90141 0.89000 0.91457 0.89936 0.91666 0.91189 0.89369 0.94185 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.63 14.31 67.78 0.97 -3.66 16 2 C -0.15 -4.68 6.43 25.65 0.16 -4.52 16 3 C 0.13 4.93 5.45 85.64 0.47 5.40 16 4 N -0.57 -26.65 2.46 -833.25 -2.05 -28.70 16 5 C 0.26 14.67 5.16 85.63 0.44 15.12 16 6 C -0.55 -32.41 9.39 25.60 0.24 -32.17 16 7 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 8 C 0.01 0.73 5.46 84.65 0.46 1.19 16 9 N -0.92 -56.18 13.29 21.45 0.28 -55.89 16 10 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 14 C 0.55 25.03 7.61 86.97 0.66 25.69 16 15 O -0.57 -30.23 16.00 -3.63 -0.06 -30.29 16 16 C 0.15 5.23 6.65 41.99 0.28 5.51 16 17 C -0.21 -5.79 9.71 22.70 0.22 -5.57 16 18 C 0.19 3.99 11.30 84.77 0.96 4.95 16 19 N -0.54 -13.06 8.65 -198.03 -1.71 -14.77 16 20 C 0.47 12.94 7.17 261.53 1.87 14.82 16 21 N -0.46 -10.57 4.72 -709.00 -3.34 -13.91 16 22 C 0.07 1.27 4.63 86.33 0.40 1.67 16 23 C -0.12 -1.46 6.10 30.65 0.19 -1.28 16 24 C -0.12 -1.37 6.00 30.67 0.18 -1.19 16 25 C -0.11 -1.65 6.10 30.65 0.19 -1.46 16 26 C 0.06 1.13 5.33 86.33 0.46 1.59 16 27 N -0.50 -15.99 4.24 -187.10 -0.79 -16.78 16 28 H 0.10 2.59 7.84 -2.91 -0.02 2.56 16 29 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.09 3.01 7.45 -2.91 -0.02 2.98 16 31 H 0.07 2.59 7.67 -2.39 -0.02 2.57 16 32 H 0.12 4.43 5.20 -2.75 -0.01 4.42 16 33 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 34 H 0.01 0.35 7.37 -2.39 -0.02 0.33 16 35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.16 4.37 7.74 -2.91 -0.02 4.35 16 37 H 0.22 2.35 8.06 -2.91 -0.02 2.32 16 38 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 39 H 0.08 1.53 7.68 -2.39 -0.02 1.52 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 45 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 47 H 0.09 2.13 4.75 -2.39 -0.01 2.12 16 Total: -1.00 -73.66 378.10 3.47 -70.19 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.96 Total: 16.58 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 8.16 Total: 26.09 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -7.62 Total: -130.05 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.06 Total: -30.29 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -73.66 3.47 -70.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359439719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.667 kcal (2) G-P(sol) polarization free energy of solvation -73.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds