Wall clock time and date at job start Tue Mar 31 2020 15:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47503 * 2 1 4 4 N 1.46506 * 109.47176 * 119.99991 * 2 1 3 5 5 N 1.40511 * 127.06895 * 300.02712 * 4 2 1 6 6 H 0.96996 * 126.52290 * 0.02562 * 5 4 2 7 7 C 1.35969 * 106.96023 * 179.97438 * 5 4 2 8 8 N 1.30296 * 109.62254 * 359.72334 * 7 5 4 9 9 C 1.35729 * 110.03125 * 0.45579 * 8 7 5 10 10 N 1.30758 * 126.23326 * 179.81637 * 9 8 7 11 11 C 1.46496 * 120.00487 * 359.69051 * 10 9 8 12 12 C 1.50697 * 109.47604 * 119.99699 * 11 10 9 13 13 C 1.38284 * 119.97210 * 269.97817 * 12 11 10 14 14 C 1.38250 * 120.10839 * 180.02562 * 13 12 11 15 15 C 1.38161 * 120.05581 * 359.68103 * 14 13 12 16 16 C 1.38710 * 119.94432 * 0.61525 * 15 14 13 17 17 O 1.35900 * 120.05544 * 179.67631 * 16 15 14 18 18 C 1.42898 * 117.00172 * 359.72769 * 17 16 15 19 19 C 1.52997 * 109.47319 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00362 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99850 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47052 * 89.99717 * 24 22 20 26 26 H 1.48495 * 109.47307 * 209.99656 * 24 22 20 27 27 H 1.48500 * 109.47143 * 330.00164 * 24 22 20 28 28 C 1.38129 * 119.97079 * 89.99933 * 12 11 10 29 29 H 1.09000 * 109.47027 * 300.00032 * 1 2 3 30 30 H 1.09003 * 109.47246 * 59.99729 * 1 2 3 31 31 H 1.08998 * 109.47088 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47167 * 239.99431 * 2 1 3 33 33 H 1.09002 * 109.47398 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.46882 * 300.00261 * 3 2 1 35 35 H 1.09000 * 109.47005 * 59.99955 * 3 2 1 36 36 H 1.07998 * 125.18805 * 180.02562 * 7 5 4 37 37 H 1.09005 * 109.46956 * 359.97438 * 11 10 9 38 38 H 1.09002 * 109.47163 * 240.00146 * 11 10 9 39 39 H 1.07994 * 119.94418 * 0.02562 * 13 12 11 40 40 H 1.08002 * 119.97138 * 179.97438 * 14 13 12 41 41 H 1.08006 * 120.02996 * 180.29325 * 15 14 13 42 42 H 1.09002 * 109.47259 * 300.00149 * 18 17 16 43 43 H 1.09001 * 109.47074 * 60.00171 * 18 17 16 44 44 H 1.09002 * 109.47153 * 300.00307 * 19 18 17 45 45 H 1.08998 * 109.47533 * 59.99936 * 19 18 17 46 46 H 0.96994 * 119.99814 * 180.02562 * 23 22 20 47 47 H 1.07999 * 120.02419 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7717 -0.3428 2.5351 6 1 1.2411 0.4062 2.8486 7 6 2.4174 -1.2565 3.3077 8 7 3.0233 -2.1232 2.5464 9 6 2.8163 -1.8192 1.2399 10 7 3.2819 -2.4770 0.2102 11 6 4.1192 -3.6615 0.4152 12 6 3.4593 -4.8590 -0.2184 13 6 2.5839 -5.6357 0.5183 14 6 1.9773 -6.7353 -0.0599 15 6 2.2394 -7.0569 -1.3777 16 6 3.1218 -6.2830 -2.1170 17 8 3.3864 -6.6012 -3.4114 18 6 2.7249 -7.7498 -3.9454 19 6 3.1436 -7.9476 -5.4036 20 6 2.4456 -9.1585 -5.9669 21 1 1.7703 -9.7296 -5.3470 22 6 2.6680 -9.5367 -7.2740 23 7 2.0584 -10.5932 -7.7658 24 14 3.8342 -8.5476 -8.3470 25 1 5.2095 -9.0925 -8.2163 26 1 3.3991 -8.6367 -9.7639 27 1 3.8213 -7.1273 -7.9135 28 6 3.7296 -5.1802 -1.5343 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.4228 -1.2656 4.3876 37 1 4.2438 -3.8378 1.4836 38 1 5.0953 -3.5001 -0.0424 39 1 2.3738 -5.3829 1.5470 40 1 1.2943 -7.3406 0.5177 41 1 1.7617 -7.9132 -1.8304 42 1 3.0005 -8.6304 -3.3652 43 1 1.6458 -7.6041 -3.8943 44 1 2.8676 -7.0669 -5.9836 45 1 4.2226 -8.0930 -5.4553 46 1 2.2152 -10.8594 -8.6852 47 1 4.4133 -4.5732 -2.1092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414324827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:30 Heat of formation + Delta-G solvation = 96.174349 kcal Electronic energy + Delta-G solvation = -26824.635520 eV Core-core repulsion = 23010.526932 eV Total energy + Delta-G solvation = -3814.108588 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.89575 -39.63023 -37.34857 -36.35529 -35.18467 -33.27222 -32.16638 -31.44015 -30.97490 -29.70833 -29.04285 -27.79501 -25.80644 -24.83949 -23.85946 -22.21513 -21.92451 -21.29565 -20.39496 -19.81581 -18.45603 -17.46893 -16.55560 -16.36483 -15.98026 -15.65605 -15.48847 -15.32507 -15.27345 -14.90957 -14.66289 -14.22698 -14.01297 -13.71659 -13.11861 -13.05087 -12.92831 -12.85666 -12.67488 -12.42726 -12.21688 -11.96728 -11.61996 -11.51928 -11.46619 -11.22490 -11.03381 -10.92911 -10.73596 -10.50303 -10.35477 -10.09397 -9.89938 -9.73682 -9.28141 -9.27558 -8.57149 -8.45185 -7.70789 -7.51852 -6.08391 -4.08721 1.10930 1.20770 1.69465 1.86180 3.14635 3.33328 3.38965 3.40073 3.46875 3.92568 4.04103 4.13145 4.22265 4.44337 4.46433 4.60356 4.69522 4.93218 4.94291 5.11555 5.17901 5.18835 5.24427 5.25886 5.40508 5.48058 5.49122 5.64751 5.65940 5.72544 5.81351 5.89990 6.00968 6.02836 6.03988 6.13372 6.32955 6.38553 6.53037 6.73836 6.82198 6.95134 7.06140 7.11099 7.25441 7.31465 7.64392 7.69332 8.08870 8.23972 8.44739 8.92724 9.52242 11.04170 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.002089 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.413593 B =13398.679682 C =14208.264592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.179 3.821 3 C -0.166 4.166 4 N -0.436 5.436 5 N -0.518 5.518 6 H 0.441 0.559 7 C 0.366 3.634 8 N -0.577 5.577 9 C 0.530 3.470 10 N -0.591 5.591 11 C 0.121 3.879 12 C -0.037 4.037 13 C -0.159 4.159 14 C -0.083 4.083 15 C -0.214 4.214 16 C 0.141 3.859 17 O -0.321 6.321 18 C 0.073 3.927 19 C -0.009 4.009 20 C -0.525 4.525 21 H 0.074 0.926 22 C 0.071 3.929 23 N -0.899 5.899 24 Si 0.881 3.119 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.263 1.263 28 C -0.143 4.143 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.227 0.773 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.027 0.973 45 H 0.023 0.977 46 H 0.265 0.735 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.305 26.825 26.456 37.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.078 3.922 3 C -0.224 4.224 4 N -0.249 5.249 5 N -0.246 5.246 6 H 0.287 0.713 7 C 0.068 3.932 8 N -0.313 5.313 9 C 0.165 3.835 10 N -0.329 5.329 11 C -0.009 4.009 12 C -0.038 4.038 13 C -0.178 4.178 14 C -0.101 4.101 15 C -0.233 4.233 16 C 0.094 3.906 17 O -0.234 6.234 18 C -0.001 4.001 19 C -0.047 4.047 20 C -0.563 4.563 21 H 0.092 0.908 22 C -0.131 4.131 23 N -0.537 5.537 24 Si 0.707 3.293 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.187 1.187 28 C -0.162 4.162 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.243 0.757 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.146 0.854 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.755 26.182 25.082 36.300 hybrid contribution -0.325 0.957 0.193 1.029 sum -2.079 27.139 25.275 37.144 Atomic orbital electron populations 1.22246 0.94465 1.03259 1.02546 1.21259 0.94142 0.92872 0.83965 1.22245 1.02375 0.95216 1.02583 1.47600 1.53695 1.29214 0.94419 1.45125 1.52147 1.30836 0.96501 0.71290 1.25655 0.85880 0.83240 0.98387 1.71739 1.29575 1.28203 1.01736 1.20775 0.89175 0.85646 0.87932 1.72559 1.24191 1.13099 1.23083 1.20482 0.94533 0.86497 0.99345 1.19545 0.96320 0.94935 0.93001 1.20777 1.00088 0.96997 0.99895 1.20832 0.98513 0.96534 0.94255 1.21338 1.03078 1.02934 0.95922 1.19126 0.93446 0.93629 0.84378 1.86109 1.66545 1.48009 1.22772 1.23030 0.95855 0.84326 0.96876 1.19582 0.97575 0.98113 0.89402 1.20856 1.27535 1.10203 0.97664 0.90773 1.24939 0.95651 0.94810 0.97694 1.69897 1.42955 1.25220 1.15650 0.86752 0.81382 0.81573 0.79551 1.20062 1.21230 1.18699 1.20258 1.03878 0.97326 0.94756 0.92794 0.90423 0.91505 0.85885 0.91667 0.90446 0.92781 0.75673 0.91858 0.90736 0.86912 0.86441 0.85373 0.92641 0.92674 0.95437 0.95841 0.92512 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 9.48 37.15 0.35 -0.57 16 2 C 0.18 1.25 3.77 -67.93 -0.26 1.00 16 3 C -0.17 -0.80 9.48 37.16 0.35 -0.45 16 4 N -0.44 -3.62 3.40 -55.43 -0.19 -3.80 16 5 N -0.52 -2.11 7.30 29.73 0.22 -1.89 16 6 H 0.44 0.16 8.96 -182.29 -1.63 -1.48 16 7 C 0.37 1.64 13.06 -89.69 -1.17 0.47 16 8 N -0.58 -5.80 10.12 -14.67 -0.15 -5.95 16 9 C 0.53 6.37 8.50 -320.87 -2.73 3.65 16 10 N -0.59 -8.63 10.32 -63.12 -0.65 -9.28 16 11 C 0.12 1.75 6.51 -5.20 -0.03 1.72 16 12 C -0.04 -0.59 5.46 -104.65 -0.57 -1.16 16 13 C -0.16 -2.41 9.70 -39.56 -0.38 -2.80 16 14 C -0.08 -1.28 10.04 -39.61 -0.40 -1.67 16 15 C -0.21 -3.75 9.04 -39.44 -0.36 -4.10 16 16 C 0.14 2.70 6.69 -39.22 -0.26 2.44 16 17 O -0.32 -6.90 10.14 -19.43 -0.20 -7.10 16 18 C 0.07 1.62 4.68 37.16 0.17 1.80 16 19 C -0.01 -0.24 4.41 -27.89 -0.12 -0.36 16 20 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 21 H 0.07 2.27 7.99 -52.49 -0.42 1.86 16 22 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 23 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 24 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 28 C -0.14 -2.51 9.64 -39.43 -0.38 -2.89 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.12 1.14 7.84 -51.93 -0.41 0.73 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.23 -0.26 8.06 -52.49 -0.42 -0.69 16 37 H 0.06 0.89 6.97 -51.93 -0.36 0.52 16 38 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.13 2.19 6.30 -52.48 -0.33 1.86 16 42 H 0.06 1.18 7.67 -51.93 -0.40 0.79 16 43 H 0.05 1.18 7.65 -51.93 -0.40 0.79 16 44 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 45 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 46 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 47 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -37.50 394.67 -13.66 -51.16 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -8.53 Total: -2.99 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -6.21 Total: -16.52 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.00 Total: -48.03 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.20 Total: -7.10 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.50 -13.66 -51.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414324827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.338 kcal (2) G-P(sol) polarization free energy of solvation -37.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds