Wall clock time and date at job start Tue Mar 31 2020 15:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47503 * 2 1 4 4 N 1.46506 * 109.47176 * 119.99991 * 2 1 3 5 5 N 1.40511 * 127.06895 * 300.02712 * 4 2 1 6 6 H 0.96996 * 126.52290 * 0.02562 * 5 4 2 7 7 C 1.35969 * 106.96023 * 179.97438 * 5 4 2 8 8 N 1.30296 * 109.62254 * 359.72334 * 7 5 4 9 9 C 1.35729 * 110.03125 * 0.45579 * 8 7 5 10 10 N 1.30758 * 126.23326 * 179.81637 * 9 8 7 11 11 C 1.46496 * 120.00487 * 359.69051 * 10 9 8 12 12 C 1.50697 * 109.47604 * 119.99699 * 11 10 9 13 13 C 1.38284 * 119.97210 * 269.97817 * 12 11 10 14 14 C 1.38250 * 120.10839 * 180.02562 * 13 12 11 15 15 C 1.38161 * 120.05581 * 359.68103 * 14 13 12 16 16 C 1.38710 * 119.94432 * 0.61525 * 15 14 13 17 17 O 1.35900 * 120.05544 * 179.67631 * 16 15 14 18 18 C 1.42898 * 117.00172 * 359.72769 * 17 16 15 19 19 C 1.52997 * 109.47319 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00362 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99850 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47052 * 89.99717 * 24 22 20 26 26 H 1.48495 * 109.47307 * 209.99656 * 24 22 20 27 27 H 1.48500 * 109.47143 * 330.00164 * 24 22 20 28 28 C 1.38129 * 119.97079 * 89.99933 * 12 11 10 29 29 H 1.09000 * 109.47027 * 300.00032 * 1 2 3 30 30 H 1.09003 * 109.47246 * 59.99729 * 1 2 3 31 31 H 1.08998 * 109.47088 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47167 * 239.99431 * 2 1 3 33 33 H 1.09002 * 109.47398 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.46882 * 300.00261 * 3 2 1 35 35 H 1.09000 * 109.47005 * 59.99955 * 3 2 1 36 36 H 1.07998 * 125.18805 * 180.02562 * 7 5 4 37 37 H 1.09005 * 109.46956 * 359.97438 * 11 10 9 38 38 H 1.09002 * 109.47163 * 240.00146 * 11 10 9 39 39 H 1.07994 * 119.94418 * 0.02562 * 13 12 11 40 40 H 1.08002 * 119.97138 * 179.97438 * 14 13 12 41 41 H 1.08006 * 120.02996 * 180.29325 * 15 14 13 42 42 H 1.09002 * 109.47259 * 300.00149 * 18 17 16 43 43 H 1.09001 * 109.47074 * 60.00171 * 18 17 16 44 44 H 1.09002 * 109.47153 * 300.00307 * 19 18 17 45 45 H 1.08998 * 109.47533 * 59.99936 * 19 18 17 46 46 H 0.96994 * 119.99814 * 180.02562 * 23 22 20 47 47 H 1.07999 * 120.02419 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7717 -0.3428 2.5351 6 1 1.2411 0.4062 2.8486 7 6 2.4174 -1.2565 3.3077 8 7 3.0233 -2.1232 2.5464 9 6 2.8163 -1.8192 1.2399 10 7 3.2819 -2.4770 0.2102 11 6 4.1192 -3.6615 0.4152 12 6 3.4593 -4.8590 -0.2184 13 6 2.5839 -5.6357 0.5183 14 6 1.9773 -6.7353 -0.0599 15 6 2.2394 -7.0569 -1.3777 16 6 3.1218 -6.2830 -2.1170 17 8 3.3864 -6.6012 -3.4114 18 6 2.7249 -7.7498 -3.9454 19 6 3.1436 -7.9476 -5.4036 20 6 2.4456 -9.1585 -5.9669 21 1 1.7703 -9.7296 -5.3470 22 6 2.6680 -9.5367 -7.2740 23 7 2.0584 -10.5932 -7.7658 24 14 3.8342 -8.5476 -8.3470 25 1 5.2095 -9.0925 -8.2163 26 1 3.3991 -8.6367 -9.7639 27 1 3.8213 -7.1273 -7.9135 28 6 3.7296 -5.1802 -1.5343 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.4228 -1.2656 4.3876 37 1 4.2438 -3.8378 1.4836 38 1 5.0953 -3.5001 -0.0424 39 1 2.3738 -5.3829 1.5470 40 1 1.2943 -7.3406 0.5177 41 1 1.7617 -7.9132 -1.8304 42 1 3.0005 -8.6304 -3.3652 43 1 1.6458 -7.6041 -3.8943 44 1 2.8676 -7.0669 -5.9836 45 1 4.2226 -8.0930 -5.4553 46 1 2.2152 -10.8594 -8.6852 47 1 4.4133 -4.5732 -2.1092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414324827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:29 Heat of formation + Delta-G solvation = 74.260438 kcal Electronic energy + Delta-G solvation = -26825.585779 eV Core-core repulsion = 23010.526932 eV Total energy + Delta-G solvation = -3815.058846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.49472 -41.06322 -38.77398 -36.89195 -36.11239 -35.40090 -33.03534 -32.93376 -32.16147 -30.91316 -30.21956 -28.22049 -27.30215 -26.39590 -24.35506 -23.55452 -23.11457 -22.39836 -21.68551 -20.83517 -19.32461 -18.92995 -18.31629 -17.10445 -16.99840 -16.91312 -16.77910 -16.59857 -16.26424 -16.16436 -15.52338 -15.30513 -15.19844 -14.87251 -14.41585 -14.32517 -14.26181 -14.12537 -13.49977 -13.29925 -13.23723 -13.20868 -13.08965 -12.55945 -12.51374 -12.47173 -12.24665 -12.11025 -12.04717 -11.80970 -11.62287 -11.56977 -11.52380 -11.40479 -10.98053 -10.82649 -10.23052 -9.66762 -9.10862 -8.36069 -8.29287 -6.42698 0.31052 0.51716 0.66982 0.72811 1.35045 1.36173 1.49685 2.30021 2.32385 2.44518 2.78451 2.98528 2.99056 3.68172 3.74795 3.86176 3.90865 3.97393 4.04470 4.16152 4.18627 4.20681 4.22787 4.37333 4.46790 4.53774 4.59027 4.63488 4.64633 4.66053 4.77955 4.83522 4.89970 4.99745 5.06045 5.08868 5.14656 5.21044 5.28152 5.35662 5.41830 5.46873 5.52348 5.69701 5.73480 5.89479 6.15247 6.53195 6.62262 6.66351 7.06646 7.22249 7.46500 8.79597 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.002089 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.413593 B =13398.679682 C =14208.264592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.174 3.826 3 C -0.156 4.156 4 N -0.441 5.441 5 N -0.494 5.494 6 H 0.462 0.538 7 C 0.389 3.611 8 N -0.627 5.627 9 C 0.527 3.473 10 N -0.647 5.647 11 C 0.133 3.867 12 C -0.035 4.035 13 C -0.153 4.153 14 C -0.077 4.077 15 C -0.225 4.225 16 C 0.112 3.888 17 O -0.336 6.336 18 C 0.087 3.913 19 C -0.006 4.006 20 C -0.536 4.536 21 H 0.042 0.958 22 C 0.014 3.986 23 N -0.941 5.941 24 Si 0.949 3.051 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.253 1.253 28 C -0.154 4.154 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.286 0.714 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.132 0.868 40 H 0.149 0.851 41 H 0.128 0.872 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.026 0.974 45 H 0.027 0.973 46 H 0.271 0.729 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 29.760 29.175 41.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.072 3.928 3 C -0.214 4.214 4 N -0.252 5.252 5 N -0.224 5.224 6 H 0.312 0.688 7 C 0.093 3.907 8 N -0.365 5.365 9 C 0.161 3.839 10 N -0.389 5.389 11 C 0.002 3.998 12 C -0.036 4.036 13 C -0.171 4.171 14 C -0.095 4.095 15 C -0.244 4.244 16 C 0.066 3.934 17 O -0.251 6.251 18 C 0.012 3.988 19 C -0.043 4.043 20 C -0.574 4.574 21 H 0.061 0.939 22 C -0.184 4.184 23 N -0.581 5.581 24 Si 0.772 3.228 25 H -0.189 1.189 26 H -0.202 1.202 27 H -0.177 1.177 28 C -0.173 4.173 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.301 0.699 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.150 0.850 40 H 0.167 0.833 41 H 0.145 0.855 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.080 0.920 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.283 29.210 27.866 40.435 hybrid contribution -0.312 0.200 -0.384 0.533 sum -2.595 29.410 27.482 40.336 Atomic orbital electron populations 1.22173 0.93018 1.02126 1.04308 1.21315 0.95120 0.93578 0.82774 1.22160 1.01173 0.93751 1.04301 1.47823 1.52539 1.28358 0.96503 1.45285 1.51406 1.31146 0.94559 0.68771 1.26830 0.82811 0.80945 1.00126 1.71722 1.32688 1.30947 1.01141 1.21001 0.88425 0.85834 0.88659 1.72499 1.27307 1.14369 1.24713 1.20284 0.94214 0.86443 0.98834 1.19855 0.95988 0.95389 0.92343 1.21041 0.99104 0.96365 1.00635 1.21162 0.98332 0.96582 0.93446 1.21445 1.03090 1.02923 0.96927 1.19374 0.95263 0.95018 0.83703 1.86029 1.66986 1.47642 1.24420 1.22676 0.95849 0.85078 0.95197 1.19446 0.97223 0.96304 0.91367 1.21089 1.27322 1.11194 0.97812 0.93935 1.25872 0.97449 0.95904 0.99214 1.70021 1.44635 1.26959 1.16437 0.85680 0.79224 0.80239 0.77704 1.18879 1.20193 1.17688 1.20346 1.04210 0.97114 0.95624 0.90447 0.89247 0.93988 0.89099 0.93406 0.89223 0.90541 0.69945 0.91725 0.91704 0.84980 0.83316 0.85459 0.92345 0.92583 0.95538 0.95506 0.92044 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 71.98 0.68 -0.80 16 2 C 0.17 2.29 3.77 44.99 0.17 2.46 16 3 C -0.16 -1.22 9.48 71.98 0.68 -0.53 16 4 N -0.44 -6.68 3.40 -329.27 -1.12 -7.80 16 5 N -0.49 -2.27 7.30 -59.85 -0.44 -2.71 16 6 H 0.46 -1.82 8.96 -213.06 -1.91 -3.73 16 7 C 0.39 1.99 13.06 180.02 2.35 4.35 16 8 N -0.63 -11.47 10.12 -200.32 -2.03 -13.49 16 9 C 0.53 12.43 8.50 260.81 2.22 14.64 16 10 N -0.65 -19.52 10.32 -353.60 -3.65 -23.17 16 11 C 0.13 3.96 6.51 85.63 0.56 4.52 16 12 C -0.03 -1.12 5.46 -19.88 -0.11 -1.23 16 13 C -0.15 -4.51 9.70 22.28 0.22 -4.29 16 14 C -0.08 -2.29 10.04 22.25 0.22 -2.06 16 15 C -0.22 -7.94 9.04 22.36 0.20 -7.74 16 16 C 0.11 4.41 6.69 22.50 0.15 4.56 16 17 O -0.34 -14.87 10.14 -92.43 -0.94 -15.81 16 18 C 0.09 3.93 4.68 71.98 0.34 4.26 16 19 C -0.01 -0.30 4.41 29.85 0.13 -0.17 16 20 C -0.54 -32.00 9.66 25.60 0.25 -31.76 16 21 H 0.04 2.72 7.99 -2.91 -0.02 2.70 16 22 C 0.01 0.83 5.47 84.65 0.46 1.29 16 23 N -0.94 -59.46 13.96 21.45 0.30 -59.16 16 24 Si 0.95 45.84 27.47 68.60 1.88 47.72 16 25 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 27 H -0.25 -11.76 6.54 99.48 0.65 -11.11 16 28 C -0.15 -5.61 9.64 22.37 0.22 -5.40 16 29 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 1.80 7.84 -2.39 -0.02 1.78 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.49 16 35 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.29 -2.32 8.06 -2.91 -0.02 -2.35 16 37 H 0.06 1.83 6.97 -2.38 -0.02 1.82 16 38 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 39 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.13 4.43 6.30 -2.91 -0.02 4.41 16 42 H 0.06 2.57 7.67 -2.39 -0.02 2.55 16 43 H 0.06 2.49 7.65 -2.39 -0.02 2.47 16 44 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 45 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 46 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 47 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -85.61 394.67 1.76 -83.86 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -0.99 Total: 8.46 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 8.74 Total: -17.90 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -6.93 Total: -106.33 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.94 Total: -15.81 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.88 Total: 47.72 kcal Total: -85.61 1.76 -83.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414324827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.117 kcal (2) G-P(sol) polarization free energy of solvation -85.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds