Wall clock time and date at job start Tue Mar 31 2020 15:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00353 * 2 1 4 4 N 1.46495 * 109.46994 * 125.00339 * 3 2 1 5 5 C 1.46506 * 119.99852 * 270.27042 * 4 3 2 6 6 C 1.50690 * 109.47437 * 269.73174 * 5 4 3 7 7 H 1.07998 * 120.00222 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00159 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99872 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00067 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47218 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46762 * 120.00262 * 10 8 6 13 13 H 1.48499 * 109.46970 * 239.99801 * 10 8 6 14 14 C 1.34776 * 120.00121 * 90.00661 * 4 3 2 15 15 O 1.21585 * 120.00018 * 179.97438 * 14 4 3 16 16 N 1.34780 * 119.99955 * 359.97438 * 14 4 3 17 17 C 1.39970 * 119.99766 * 174.65885 * 16 14 4 18 18 C 1.38894 * 120.65136 * 147.51816 * 17 16 14 19 19 N 1.31436 * 120.50346 * 180.02562 * 18 17 16 20 20 C 1.32724 * 122.50633 * 359.92724 * 19 18 17 21 21 C 1.37662 * 120.21563 * 359.90864 * 20 19 18 22 22 C 1.39005 * 120.65164 * 327.23690 * 17 16 14 23 23 C 1.50511 * 122.84310 * 180.42521 * 21 20 19 24 24 C 1.52763 * 110.56460 * 342.45385 * 23 21 20 25 25 H 1.09004 * 109.68950 * 291.13626 * 24 23 21 26 26 N 1.46903 * 109.68908 * 170.56600 * 24 23 21 27 27 C 1.53322 * 108.35274 * 50.84911 * 24 23 21 28 28 C 1.50750 * 117.47731 * 179.67251 * 20 19 18 29 29 H 1.07996 * 119.99716 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99917 * 359.97438 * 1 2 3 31 31 H 1.08010 * 119.99904 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.46740 * 5.00121 * 3 2 1 33 33 H 1.09000 * 109.47020 * 245.00582 * 3 2 1 34 34 H 1.09003 * 109.46942 * 29.73330 * 5 4 3 35 35 H 1.09001 * 109.46899 * 149.72506 * 5 4 3 36 36 H 0.97006 * 120.00400 * 179.97438 * 9 8 6 37 37 H 0.96994 * 120.00062 * 354.65249 * 16 14 4 38 38 H 1.07998 * 119.75297 * 0.08694 * 18 17 16 39 39 H 1.07998 * 120.58922 * 0.03482 * 22 17 16 40 40 H 1.08997 * 109.26288 * 222.17332 * 23 21 20 41 41 H 1.08998 * 109.22817 * 102.71285 * 23 21 20 42 42 H 1.00892 * 111.00373 * 61.10336 * 26 24 23 43 43 H 1.00898 * 111.00196 * 185.06018 * 26 24 23 44 44 H 1.09006 * 109.64395 * 170.43877 * 27 24 23 45 45 H 1.09003 * 109.81768 * 49.90430 * 27 24 23 46 46 H 1.09004 * 109.25404 * 282.58898 * 28 20 19 47 47 H 1.08995 * 109.26019 * 42.02553 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3317 1.1313 5 6 2.5572 1.8593 2.4265 6 6 2.8433 3.3375 2.4891 7 1 3.3046 3.8343 1.6485 8 6 2.5170 4.0555 3.6200 9 7 1.9556 3.4505 4.6439 10 14 2.8723 5.8878 3.6979 11 1 3.5022 6.3244 2.4260 12 1 1.6022 6.6300 3.9010 13 1 3.7942 6.1656 4.8284 14 6 4.2498 0.8660 0.9822 15 8 5.0220 0.8886 1.9211 16 7 4.6497 0.3753 -0.2076 17 6 5.9838 -0.0044 -0.3953 18 6 6.3082 -1.0564 -1.2423 19 7 7.5619 -1.4108 -1.4160 20 6 8.5679 -0.7962 -0.8063 21 6 8.3223 0.2574 0.0451 22 6 7.0105 0.6677 0.2577 23 6 9.4179 1.0021 0.7594 24 6 10.7096 0.1866 0.7592 25 1 10.5908 -0.6896 1.3967 26 7 11.8174 1.0139 1.2555 27 6 11.0002 -0.2570 -0.6794 28 6 9.9612 -1.3013 -1.0820 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 1.4868 1.6910 2.5451 35 1 3.0957 1.3507 3.2262 36 1 1.7263 3.9555 5.4397 37 1 4.0131 0.2852 -0.9338 38 1 5.5244 -1.5866 -1.7628 39 1 6.7933 1.4925 0.9201 40 1 9.1123 1.1913 1.7884 41 1 9.5930 1.9529 0.2559 42 1 11.6463 1.3172 2.2024 43 1 12.6954 0.5217 1.1865 44 1 11.9979 -0.6928 -0.7340 45 1 10.9374 0.5999 -1.3501 46 1 10.1313 -2.2154 -0.5132 47 1 10.0616 -1.5166 -2.1458 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415954248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:03 Heat of formation + Delta-G solvation = 27.289346 kcal Electronic energy + Delta-G solvation = -28119.907446 eV Core-core repulsion = 24302.811780 eV Total energy + Delta-G solvation = -3817.095666 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.90155 -39.59657 -37.40579 -35.94578 -34.78026 -33.21173 -32.78034 -32.58319 -32.04272 -29.17258 -28.15087 -27.41276 -25.59934 -24.28096 -23.13695 -22.63081 -22.15688 -20.24275 -19.79553 -19.33811 -17.89410 -16.88936 -16.61850 -16.34618 -16.31331 -15.71892 -15.37633 -14.99715 -14.81048 -14.52936 -14.35956 -14.11051 -13.83550 -13.65999 -13.22831 -12.92654 -12.88442 -12.72760 -12.48879 -12.34436 -12.05735 -11.86829 -11.64130 -11.35271 -11.23325 -11.15004 -10.92736 -10.73582 -10.66101 -10.43494 -10.22819 -9.70892 -9.66551 -9.31288 -9.27665 -9.00413 -8.91152 -8.47712 -8.06508 -7.69636 -6.08426 -4.13360 1.18548 1.43919 2.33614 3.09904 3.26974 3.34949 3.39064 3.60207 3.98701 4.10525 4.28222 4.35182 4.46469 4.64297 4.66336 4.89715 4.94648 5.05138 5.10465 5.20639 5.25824 5.29781 5.36936 5.42801 5.44841 5.50806 5.60833 5.66925 5.79959 5.83077 5.91062 6.01039 6.07233 6.09353 6.22477 6.36192 6.56257 6.66178 6.71740 6.85671 6.90933 7.02606 7.19860 7.29558 7.42542 7.57866 7.88830 8.06505 8.17855 8.45868 8.87189 9.12210 9.52107 10.99525 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010959 B = 0.003454 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.271173 B = 8103.666059 C =10266.739082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.175 4.175 3 C 0.135 3.865 4 N -0.600 5.600 5 C 0.261 3.739 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.698 3.302 15 O -0.566 6.566 16 N -0.691 5.691 17 C 0.133 3.867 18 C 0.068 3.932 19 N -0.469 5.469 20 C 0.096 3.904 21 C -0.099 4.099 22 C -0.083 4.083 23 C -0.071 4.071 24 C 0.091 3.909 25 H 0.041 0.959 26 N -0.847 5.847 27 C -0.110 4.110 28 C -0.059 4.059 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.404 0.596 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.344 0.656 43 H 0.341 0.659 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.712 -8.979 -12.821 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.194 4.194 3 C 0.011 3.989 4 N -0.334 5.334 5 C 0.142 3.858 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.400 3.600 15 O -0.442 6.442 16 N -0.340 5.340 17 C 0.034 3.966 18 C -0.095 4.095 19 N -0.177 5.177 20 C -0.041 4.041 21 C -0.102 4.102 22 C -0.111 4.111 23 C -0.109 4.109 24 C -0.021 4.021 25 H 0.059 0.941 26 N -0.377 5.377 27 C -0.149 4.149 28 C -0.098 4.098 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.241 0.759 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.096 -9.034 -13.006 19.336 hybrid contribution -0.614 0.876 1.140 1.564 sum 10.482 -8.158 -11.866 17.811 Atomic orbital electron populations 1.23835 0.95795 1.01887 0.99877 1.23447 0.96578 0.98887 1.00523 1.20562 0.93231 0.95787 0.89298 1.47606 1.08869 1.62651 1.14263 1.19257 0.95291 0.93724 0.77485 1.21471 1.40492 0.93351 1.01317 0.92385 1.24921 0.95027 0.98749 0.95312 1.69941 1.41964 1.36130 1.05209 0.86451 0.77943 0.84925 0.78153 1.19813 1.20952 1.20850 1.15961 0.83399 0.78647 0.82014 1.90907 1.52933 1.61446 1.38942 1.42919 1.08454 1.67821 1.14848 1.18547 0.84398 0.94940 0.98715 1.22346 0.93800 0.93906 0.99429 1.67403 0.99352 1.28306 1.22614 1.20808 0.94753 0.93755 0.94771 1.20245 0.94657 0.97224 0.98088 1.21744 0.90376 0.99711 0.99297 1.20392 0.91238 0.98551 1.00694 1.21309 0.90948 0.93992 0.95814 0.94138 1.58683 1.04543 1.45583 1.28901 1.21584 0.98207 0.99048 0.96044 1.20224 0.88690 0.98255 1.02589 0.88673 0.88173 0.87752 0.88896 0.91376 0.94699 0.93747 0.92730 0.75916 0.82896 0.83124 0.90364 0.89371 0.84360 0.84644 0.91211 0.90715 0.90439 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 14.32 29.01 0.42 -1.73 16 2 C -0.17 -2.34 9.85 -36.03 -0.35 -2.69 16 3 C 0.14 2.07 5.56 -5.20 -0.03 2.04 16 4 N -0.60 -12.27 2.44 -182.19 -0.44 -12.72 16 5 C 0.26 6.67 5.16 -5.20 -0.03 6.64 16 6 C -0.53 -14.60 9.39 -34.45 -0.32 -14.92 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 10 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.70 14.37 8.04 -86.92 -0.70 13.67 16 15 O -0.57 -14.02 13.63 5.29 0.07 -13.95 16 16 N -0.69 -10.85 5.19 -14.18 -0.07 -10.92 16 17 C 0.13 2.09 6.31 -83.61 -0.53 1.56 16 18 C 0.07 0.93 11.14 -17.48 -0.19 0.74 16 19 N -0.47 -6.69 10.17 -9.34 -0.10 -6.79 16 20 C 0.10 1.29 6.62 -82.39 -0.55 0.74 16 21 C -0.10 -1.42 5.74 -104.61 -0.60 -2.02 16 22 C -0.08 -1.39 8.36 -38.99 -0.33 -1.71 16 23 C -0.07 -0.86 5.28 -28.10 -0.15 -1.01 16 24 C 0.09 0.89 3.28 -67.67 -0.22 0.67 16 25 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 26 N -0.85 -7.17 9.26 -4.63 -0.04 -7.21 16 27 C -0.11 -0.99 5.53 -26.71 -0.15 -1.14 16 28 C -0.06 -0.60 5.91 -28.00 -0.17 -0.77 16 29 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 31 H 0.10 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.09 1.48 7.73 -51.93 -0.40 1.08 16 33 H 0.07 0.85 6.45 -51.93 -0.33 0.51 16 34 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.40 4.96 6.63 -40.82 -0.27 4.69 16 38 H 0.15 1.64 8.06 -52.49 -0.42 1.21 16 39 H 0.15 2.90 6.47 -52.49 -0.34 2.56 16 40 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.34 2.69 9.05 -39.30 -0.36 2.33 16 43 H 0.34 2.23 8.99 -39.29 -0.35 1.88 16 44 H 0.07 0.50 8.13 -51.93 -0.42 0.07 16 45 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -33.20 386.60 -10.07 -43.28 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.04 Total: 9.63 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -3.99 Total: 1.73 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.08 Total: -63.05 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.07 Total: -13.95 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.20 -10.07 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415954248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.565 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds