Wall clock time and date at job start Tue Mar 31 2020 15:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00353 * 2 1 4 4 N 1.46495 * 109.46994 * 125.00339 * 3 2 1 5 5 C 1.46506 * 119.99852 * 270.27042 * 4 3 2 6 6 C 1.50690 * 109.47437 * 269.73174 * 5 4 3 7 7 H 1.07998 * 120.00222 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00159 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99872 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00067 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47218 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46762 * 120.00262 * 10 8 6 13 13 H 1.48499 * 109.46970 * 239.99801 * 10 8 6 14 14 C 1.34776 * 120.00121 * 90.00661 * 4 3 2 15 15 O 1.21585 * 120.00018 * 179.97438 * 14 4 3 16 16 N 1.34780 * 119.99955 * 359.97438 * 14 4 3 17 17 C 1.39970 * 119.99766 * 174.65885 * 16 14 4 18 18 C 1.38894 * 120.65136 * 147.51816 * 17 16 14 19 19 N 1.31436 * 120.50346 * 180.02562 * 18 17 16 20 20 C 1.32724 * 122.50633 * 359.92724 * 19 18 17 21 21 C 1.37662 * 120.21563 * 359.90864 * 20 19 18 22 22 C 1.39005 * 120.65164 * 327.23690 * 17 16 14 23 23 C 1.50511 * 122.84310 * 180.42521 * 21 20 19 24 24 C 1.52763 * 110.56460 * 342.45385 * 23 21 20 25 25 H 1.09004 * 109.68950 * 291.13626 * 24 23 21 26 26 N 1.46903 * 109.68908 * 170.56600 * 24 23 21 27 27 C 1.53322 * 108.35274 * 50.84911 * 24 23 21 28 28 C 1.50750 * 117.47731 * 179.67251 * 20 19 18 29 29 H 1.07996 * 119.99716 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99917 * 359.97438 * 1 2 3 31 31 H 1.08010 * 119.99904 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.46740 * 5.00121 * 3 2 1 33 33 H 1.09000 * 109.47020 * 245.00582 * 3 2 1 34 34 H 1.09003 * 109.46942 * 29.73330 * 5 4 3 35 35 H 1.09001 * 109.46899 * 149.72506 * 5 4 3 36 36 H 0.97006 * 120.00400 * 179.97438 * 9 8 6 37 37 H 0.96994 * 120.00062 * 354.65249 * 16 14 4 38 38 H 1.07998 * 119.75297 * 0.08694 * 18 17 16 39 39 H 1.07998 * 120.58922 * 0.03482 * 22 17 16 40 40 H 1.08997 * 109.26288 * 222.17332 * 23 21 20 41 41 H 1.08998 * 109.22817 * 102.71285 * 23 21 20 42 42 H 1.00892 * 111.00373 * 61.10336 * 26 24 23 43 43 H 1.00898 * 111.00196 * 185.06018 * 26 24 23 44 44 H 1.09006 * 109.64395 * 170.43877 * 27 24 23 45 45 H 1.09003 * 109.81768 * 49.90430 * 27 24 23 46 46 H 1.09004 * 109.25404 * 282.58898 * 28 20 19 47 47 H 1.08995 * 109.26019 * 42.02553 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3317 1.1313 5 6 2.5572 1.8593 2.4265 6 6 2.8433 3.3375 2.4891 7 1 3.3046 3.8343 1.6485 8 6 2.5170 4.0555 3.6200 9 7 1.9556 3.4505 4.6439 10 14 2.8723 5.8878 3.6979 11 1 3.5022 6.3244 2.4260 12 1 1.6022 6.6300 3.9010 13 1 3.7942 6.1656 4.8284 14 6 4.2498 0.8660 0.9822 15 8 5.0220 0.8886 1.9211 16 7 4.6497 0.3753 -0.2076 17 6 5.9838 -0.0044 -0.3953 18 6 6.3082 -1.0564 -1.2423 19 7 7.5619 -1.4108 -1.4160 20 6 8.5679 -0.7962 -0.8063 21 6 8.3223 0.2574 0.0451 22 6 7.0105 0.6677 0.2577 23 6 9.4179 1.0021 0.7594 24 6 10.7096 0.1866 0.7592 25 1 10.5908 -0.6896 1.3967 26 7 11.8174 1.0139 1.2555 27 6 11.0002 -0.2570 -0.6794 28 6 9.9612 -1.3013 -1.0820 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 1.4868 1.6910 2.5451 35 1 3.0957 1.3507 3.2262 36 1 1.7263 3.9555 5.4397 37 1 4.0131 0.2852 -0.9338 38 1 5.5244 -1.5866 -1.7628 39 1 6.7933 1.4925 0.9201 40 1 9.1123 1.1913 1.7884 41 1 9.5930 1.9529 0.2559 42 1 11.6463 1.3172 2.2024 43 1 12.6954 0.5217 1.1865 44 1 11.9979 -0.6928 -0.7340 45 1 10.9374 0.5999 -1.3501 46 1 10.1313 -2.2154 -0.5132 47 1 10.0616 -1.5166 -2.1458 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415954248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:02 Heat of formation + Delta-G solvation = 4.703831 kcal Electronic energy + Delta-G solvation = -28120.886827 eV Core-core repulsion = 24302.811780 eV Total energy + Delta-G solvation = -3818.075047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.14567 -40.98599 -38.40042 -37.39698 -36.18181 -35.03863 -33.93695 -33.66830 -33.36059 -30.49992 -29.12410 -29.10297 -27.00550 -25.62373 -24.63431 -23.69574 -23.38546 -21.52773 -20.87499 -20.54832 -19.31728 -18.62470 -18.24185 -17.52521 -17.36657 -16.95394 -16.44174 -16.33605 -16.20917 -15.91955 -15.65420 -15.36600 -14.91214 -14.78499 -14.50220 -14.35922 -14.19880 -14.06195 -13.70387 -13.49302 -13.33533 -13.15882 -13.05421 -12.89667 -12.62536 -12.47709 -12.31190 -12.23097 -12.09290 -11.73110 -11.65388 -11.52045 -11.27453 -10.66104 -10.52575 -10.36970 -10.22108 -9.64184 -9.63308 -9.07517 -8.23376 -6.37904 0.04170 0.22185 1.22455 1.35433 1.37721 1.49232 1.72565 2.09460 2.37091 2.76788 2.93736 3.06779 3.28078 3.43592 3.71952 3.78646 3.87425 3.89196 3.98601 4.08071 4.16978 4.29016 4.31287 4.39705 4.46921 4.58546 4.72192 4.73283 4.77215 4.89554 4.91085 4.95464 5.02794 5.03462 5.13777 5.20743 5.26783 5.32764 5.42317 5.47456 5.67478 5.71440 5.79627 5.87512 5.99666 6.04176 6.21951 6.61889 6.70908 6.93650 6.95166 7.28844 7.54265 8.83570 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010959 B = 0.003454 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.271173 B = 8103.666059 C =10266.739082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.189 4.189 3 C 0.132 3.868 4 N -0.605 5.605 5 C 0.281 3.719 6 C -0.541 4.541 7 H 0.052 0.948 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.965 3.035 11 H -0.269 1.269 12 H -0.268 1.268 13 H -0.282 1.282 14 C 0.695 3.305 15 O -0.618 6.618 16 N -0.668 5.668 17 C 0.111 3.889 18 C 0.082 3.918 19 N -0.475 5.475 20 C 0.098 3.902 21 C -0.106 4.106 22 C -0.105 4.105 23 C -0.069 4.069 24 C 0.096 3.904 25 H 0.039 0.961 26 N -0.849 5.849 27 C -0.103 4.103 28 C -0.057 4.057 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.027 0.973 35 H -0.002 1.002 36 H 0.267 0.733 37 H 0.422 0.578 38 H 0.189 0.811 39 H 0.115 0.885 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.346 0.654 43 H 0.355 0.645 44 H 0.097 0.903 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.576 -9.741 -15.152 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.209 4.209 3 C 0.010 3.990 4 N -0.338 5.338 5 C 0.160 3.840 6 C -0.580 4.580 7 H 0.070 0.930 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.790 3.210 11 H -0.193 1.193 12 H -0.193 1.193 13 H -0.208 1.208 14 C 0.397 3.603 15 O -0.498 6.498 16 N -0.319 5.319 17 C 0.013 3.987 18 C -0.081 4.081 19 N -0.183 5.183 20 C -0.038 4.038 21 C -0.109 4.109 22 C -0.134 4.134 23 C -0.107 4.107 24 C -0.015 4.015 25 H 0.057 0.943 26 N -0.381 5.381 27 C -0.142 4.142 28 C -0.095 4.095 29 H 0.135 0.865 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.045 0.955 35 H 0.016 0.984 36 H 0.076 0.924 37 H 0.262 0.738 38 H 0.206 0.794 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.159 0.841 43 H 0.169 0.831 44 H 0.115 0.885 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.955 -9.820 -15.419 21.843 hybrid contribution -0.873 1.067 1.846 2.304 sum 11.082 -8.753 -13.573 19.587 Atomic orbital electron populations 1.24067 0.95463 1.03007 0.97505 1.23319 0.96947 0.98011 1.02585 1.20818 0.92787 0.96930 0.88496 1.47423 1.09851 1.62475 1.14041 1.18647 0.93891 0.92517 0.78933 1.21718 1.40445 0.94472 1.01381 0.92976 1.25795 0.94670 1.03504 0.94857 1.70052 1.42751 1.38011 1.05798 0.85405 0.78238 0.79306 0.78076 1.19322 1.19339 1.20816 1.16103 0.82887 0.78541 0.82756 1.90871 1.54336 1.63430 1.41127 1.42489 1.09029 1.66817 1.13606 1.18730 0.83751 0.96187 1.00001 1.22814 0.94572 0.92636 0.98069 1.67559 0.99583 1.28363 1.22813 1.21405 0.96392 0.92658 0.93347 1.20423 0.94081 0.97791 0.98576 1.21656 0.92296 0.99695 0.99737 1.20383 0.92239 0.98751 0.99336 1.21215 0.90035 0.93452 0.96838 0.94276 1.58641 1.04773 1.45509 1.29194 1.21557 0.99223 0.98628 0.94755 1.20347 0.86626 0.98850 1.03684 0.86493 0.88123 0.86861 0.89705 0.88288 0.95470 0.98392 0.92389 0.73753 0.79439 0.86693 0.92069 0.89752 0.84070 0.83069 0.88460 0.91325 0.89166 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 14.32 67.78 0.97 -2.70 16 2 C -0.19 -4.81 9.85 25.65 0.25 -4.56 16 3 C 0.13 3.99 5.56 85.63 0.48 4.46 16 4 N -0.60 -25.56 2.44 -848.58 -2.07 -27.63 16 5 C 0.28 15.10 5.16 85.63 0.44 15.54 16 6 C -0.54 -31.05 9.39 25.60 0.24 -30.81 16 7 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 8 C 0.01 0.63 5.46 84.65 0.46 1.09 16 9 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 10 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 14 C 0.70 29.82 8.04 179.05 1.44 31.26 16 15 O -0.62 -32.72 13.63 -3.98 -0.05 -32.78 16 16 N -0.67 -21.04 5.19 -317.03 -1.65 -22.69 16 17 C 0.11 3.51 6.31 38.18 0.24 3.76 16 18 C 0.08 2.10 11.14 84.91 0.95 3.04 16 19 N -0.47 -12.62 10.17 -183.46 -1.87 -14.48 16 20 C 0.10 2.52 6.62 42.30 0.28 2.80 16 21 C -0.11 -3.08 5.74 -19.86 -0.11 -3.20 16 22 C -0.11 -3.71 8.36 22.66 0.19 -3.52 16 23 C -0.07 -1.74 5.28 29.71 0.16 -1.58 16 24 C 0.10 1.79 3.28 44.94 0.15 1.93 16 25 H 0.04 0.75 8.10 -2.38 -0.02 0.73 16 26 N -0.85 -13.25 9.26 -168.55 -1.56 -14.81 16 27 C -0.10 -1.59 5.53 30.61 0.17 -1.42 16 28 C -0.06 -1.00 5.91 29.77 0.18 -0.83 16 29 H 0.12 2.15 8.06 -2.91 -0.02 2.12 16 30 H 0.10 2.26 7.84 -2.91 -0.02 2.24 16 31 H 0.11 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.08 2.70 7.73 -2.39 -0.02 2.68 16 33 H 0.10 2.32 6.45 -2.39 -0.02 2.30 16 34 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 35 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 36 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 37 H 0.42 9.79 6.63 -92.71 -0.61 9.18 16 38 H 0.19 3.39 8.06 -2.91 -0.02 3.36 16 39 H 0.12 4.88 6.47 -2.91 -0.02 4.86 16 40 H 0.06 1.72 8.13 -2.39 -0.02 1.70 16 41 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.35 5.19 9.05 -89.70 -0.81 4.38 16 43 H 0.35 3.86 8.99 -89.70 -0.81 3.06 16 44 H 0.10 1.01 8.13 -2.38 -0.02 0.99 16 45 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 46 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -75.88 386.60 0.36 -75.51 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -1.22 Total: 30.11 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 6.47 Total: 15.27 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -6.86 Total: -135.03 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.05 Total: -32.78 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -75.88 0.36 -75.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415954248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.218 kcal (2) G-P(sol) polarization free energy of solvation -75.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds