Wall clock time and date at job start Tue Mar 31 2020 15:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99878 * 2 1 4 4 N 1.46503 * 109.47301 * 124.99794 * 3 2 1 5 5 C 1.46493 * 120.00158 * 270.00552 * 4 3 2 6 6 C 1.50703 * 109.46843 * 269.99863 * 5 4 3 7 7 H 1.08006 * 120.00151 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99923 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00297 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99898 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47131 * 59.99762 * 10 8 6 12 12 H 1.48502 * 109.47028 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47109 * 299.99674 * 10 8 6 14 14 C 1.34778 * 119.99494 * 90.00041 * 4 3 2 15 15 O 1.21592 * 119.99830 * 180.02562 * 14 4 3 16 16 N 1.34773 * 120.00139 * 0.02562 * 14 4 3 17 17 C 1.39981 * 119.99631 * 185.28841 * 16 14 4 18 18 C 1.38899 * 120.64813 * 212.82070 * 17 16 14 19 19 N 1.31433 * 120.49816 * 180.15257 * 18 17 16 20 20 C 1.32717 * 122.51306 * 359.68983 * 19 18 17 21 21 C 1.37669 * 120.21184 * 0.22757 * 20 19 18 22 22 C 1.39003 * 120.65706 * 32.58256 * 17 16 14 23 23 C 1.50509 * 122.84237 * 179.54237 * 21 20 19 24 24 C 1.52761 * 110.56893 * 17.52284 * 23 21 20 25 25 H 1.08998 * 109.68798 * 68.90269 * 24 23 21 26 26 N 1.46897 * 109.68909 * 189.43966 * 24 23 21 27 27 C 1.53327 * 108.34869 * 309.15670 * 24 23 21 28 28 C 1.50750 * 117.48232 * 180.39987 * 20 19 18 29 29 H 1.08000 * 120.00183 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99857 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.99885 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47163 * 4.99949 * 3 2 1 33 33 H 1.09000 * 109.47531 * 245.00251 * 3 2 1 34 34 H 1.09002 * 109.47192 * 29.99443 * 5 4 3 35 35 H 1.08997 * 109.47543 * 149.99948 * 5 4 3 36 36 H 0.97001 * 120.00126 * 180.02562 * 9 8 6 37 37 H 0.96992 * 120.00699 * 5.28512 * 16 14 4 38 38 H 1.08003 * 119.75145 * 359.90628 * 18 17 16 39 39 H 1.08004 * 120.57969 * 0.11873 * 22 17 16 40 40 H 1.09001 * 109.25510 * 137.80088 * 23 21 20 41 41 H 1.08994 * 109.25659 * 257.24088 * 23 21 20 42 42 H 1.00893 * 110.99694 * 299.99672 * 26 24 23 43 43 H 1.00896 * 110.99875 * 63.95713 * 26 24 23 44 44 H 1.09002 * 109.64342 * 189.56945 * 27 24 23 45 45 H 1.09003 * 109.63862 * 309.98705 * 27 24 23 46 46 H 1.08996 * 109.26150 * 77.44853 * 28 20 19 47 47 H 1.08999 * 109.22434 * 317.99144 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5588 1.8649 2.4248 6 6 2.8441 3.3436 2.4804 7 1 3.3038 3.8370 1.6367 8 6 2.5191 4.0665 3.6086 9 7 1.9598 3.4658 4.6361 10 14 2.8734 5.8993 3.6777 11 1 2.1376 6.5873 2.5865 12 1 2.4325 6.4396 4.9888 13 1 4.3313 6.1282 3.5126 14 6 4.2497 0.8663 0.9823 15 8 5.0216 0.8881 1.9215 16 7 4.6499 0.3764 -0.2077 17 6 5.9155 -0.2082 -0.3339 18 6 6.6271 -0.1063 -1.5224 19 7 7.8140 -0.6589 -1.6387 20 6 8.3904 -1.3262 -0.6468 21 6 7.7448 -1.4666 0.5609 22 6 6.4869 -0.8979 0.7291 23 6 8.3386 -2.2189 1.7214 24 6 9.8435 -2.3991 1.5306 25 1 10.3430 -1.4343 1.6193 26 7 10.3645 -3.3215 2.5483 27 6 10.0867 -2.9809 0.1330 28 6 9.7584 -1.9063 -0.9013 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4027 -0.9314 34 1 1.4887 1.6966 2.5459 35 1 3.0989 1.3604 3.2259 36 1 1.7309 3.9744 5.4297 37 1 4.0610 0.4288 -0.9766 38 1 6.2003 0.4277 -2.3586 39 1 5.9612 -0.9942 1.6676 40 1 8.1568 -1.6629 2.6411 41 1 7.8658 -3.1982 1.7946 42 1 10.1984 -2.9656 3.4776 43 1 9.9686 -4.2429 2.4377 44 1 11.1314 -3.2762 0.0357 45 1 9.4449 -3.8487 -0.0193 46 1 10.5024 -1.1119 -0.8427 47 1 9.7814 -2.3475 -1.8977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415954249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:07 Heat of formation + Delta-G solvation = 26.579275 kcal Electronic energy + Delta-G solvation = -28094.194874 eV Core-core repulsion = 24277.068417 eV Total energy + Delta-G solvation = -3817.126457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.94708 -39.63652 -37.49699 -35.97429 -34.81705 -33.22929 -32.78121 -32.60702 -32.06884 -29.21265 -28.02144 -27.42971 -25.62590 -24.31899 -23.17319 -22.67253 -22.19173 -20.31280 -19.95271 -19.40576 -17.95865 -16.86377 -16.59622 -16.50154 -16.33694 -15.67565 -15.30208 -14.98895 -14.91160 -14.52926 -14.29119 -14.08884 -13.82909 -13.53577 -13.38362 -13.19901 -12.94499 -12.87532 -12.55954 -12.29743 -11.99880 -11.86057 -11.59330 -11.38490 -11.20126 -11.11030 -10.98312 -10.94577 -10.64276 -10.47068 -10.22732 -9.77798 -9.66970 -9.35045 -9.30482 -9.07977 -8.95275 -8.47851 -8.09710 -7.71591 -6.09199 -4.14249 1.14779 1.39567 2.31750 3.07716 3.28822 3.33538 3.37142 3.56987 3.94284 4.16487 4.25715 4.33627 4.44303 4.59616 4.67140 4.80732 4.87401 4.99327 5.08991 5.15967 5.24966 5.28067 5.33500 5.35859 5.40297 5.47952 5.56532 5.62445 5.71074 5.84023 5.88949 5.92969 6.04758 6.05603 6.18889 6.29921 6.49952 6.63846 6.69830 6.83800 6.86154 6.99445 7.17365 7.26535 7.40301 7.55568 7.87685 8.04011 8.16501 8.43411 8.85460 9.09756 9.51158 10.98684 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.003104 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.588396 B = 9018.663517 C =10110.906358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.173 4.173 3 C 0.136 3.864 4 N -0.600 5.600 5 C 0.262 3.738 6 C -0.530 4.530 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.698 3.302 15 O -0.567 6.567 16 N -0.691 5.691 17 C 0.133 3.867 18 C 0.070 3.930 19 N -0.468 5.468 20 C 0.098 3.902 21 C -0.101 4.101 22 C -0.084 4.084 23 C -0.109 4.109 24 C 0.090 3.910 25 H 0.087 0.913 26 N -0.843 5.843 27 C -0.111 4.111 28 C -0.059 4.059 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.404 0.596 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.343 0.657 43 H 0.339 0.661 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.739 -13.663 -11.685 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.192 4.192 3 C 0.012 3.988 4 N -0.334 5.334 5 C 0.143 3.857 6 C -0.569 4.569 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.400 3.600 15 O -0.442 6.442 16 N -0.341 5.341 17 C 0.034 3.966 18 C -0.093 4.093 19 N -0.176 5.176 20 C -0.039 4.039 21 C -0.104 4.104 22 C -0.113 4.113 23 C -0.149 4.149 24 C -0.022 4.022 25 H 0.105 0.895 26 N -0.371 5.371 27 C -0.149 4.149 28 C -0.097 4.097 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.241 0.759 38 H 0.172 0.828 39 H 0.165 0.835 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.156 0.844 43 H 0.151 0.849 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.298 -13.331 -11.817 20.095 hybrid contribution -1.986 1.114 0.856 2.433 sum 7.312 -12.217 -10.961 17.968 Atomic orbital electron populations 1.23838 0.95791 1.01888 0.99934 1.23419 0.96514 0.98856 1.00452 1.20549 0.93224 0.95815 0.89177 1.47613 1.08523 1.62971 1.14276 1.19245 0.95294 0.93624 0.77501 1.21407 1.40771 0.93350 1.01341 0.92515 1.24913 0.94975 0.98786 0.95270 1.69915 1.41870 1.36318 1.05179 0.86562 0.78869 0.84825 0.77191 1.20233 1.21124 1.20180 1.15956 0.83255 0.78577 0.82235 1.90909 1.52595 1.61633 1.39101 1.42934 1.15785 1.62558 1.12784 1.18557 0.86914 0.95011 0.96100 1.22385 0.90498 0.99710 0.96672 1.67415 1.10022 1.08335 1.31822 1.20852 0.96647 0.97452 0.88923 1.20178 0.94859 0.99714 0.95648 1.21698 0.95296 0.94346 0.99920 1.21308 0.97095 0.99950 0.96525 1.21493 0.91679 0.96903 0.92103 0.89523 1.58981 1.65466 1.05781 1.06868 1.21588 1.02430 0.97788 0.93125 1.20217 0.91721 0.97969 0.99837 0.88152 0.88690 0.87819 0.88891 0.91502 0.94650 0.93764 0.92604 0.75891 0.82817 0.83481 0.90248 0.90677 0.84380 0.84890 0.90147 0.91752 0.90066 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 14.32 29.01 0.42 -1.73 16 2 C -0.17 -2.30 9.85 -36.03 -0.35 -2.66 16 3 C 0.14 2.08 5.66 -5.19 -0.03 2.05 16 4 N -0.60 -12.21 2.44 -182.19 -0.44 -12.65 16 5 C 0.26 6.67 5.16 -5.20 -0.03 6.64 16 6 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 7 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 10 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.70 14.30 8.04 -86.92 -0.70 13.60 16 15 O -0.57 -13.99 13.62 5.28 0.07 -13.92 16 16 N -0.69 -10.75 5.24 -14.17 -0.07 -10.83 16 17 C 0.13 2.06 6.31 -83.61 -0.53 1.53 16 18 C 0.07 0.97 11.14 -17.48 -0.19 0.77 16 19 N -0.47 -6.65 10.17 -9.34 -0.09 -6.74 16 20 C 0.10 1.29 6.62 -82.39 -0.55 0.74 16 21 C -0.10 -1.37 5.74 -104.62 -0.60 -1.97 16 22 C -0.08 -1.35 8.35 -38.99 -0.33 -1.67 16 23 C -0.11 -1.18 5.26 -28.10 -0.15 -1.33 16 24 C 0.09 0.84 3.28 -67.67 -0.22 0.62 16 25 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 26 N -0.84 -6.75 9.28 -4.63 -0.04 -6.79 16 27 C -0.11 -0.94 5.52 -26.71 -0.15 -1.09 16 28 C -0.06 -0.59 5.91 -28.00 -0.17 -0.76 16 29 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 30 H 0.09 1.00 8.06 -52.48 -0.42 0.57 16 31 H 0.10 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.09 1.48 7.72 -51.93 -0.40 1.07 16 33 H 0.07 0.81 6.29 -51.93 -0.33 0.49 16 34 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.40 4.92 6.51 -40.82 -0.27 4.66 16 38 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 39 H 0.15 2.65 6.47 -52.48 -0.34 2.31 16 40 H 0.08 0.93 8.13 -51.93 -0.42 0.51 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.34 2.52 9.04 -39.30 -0.36 2.16 16 43 H 0.34 2.27 8.98 -39.29 -0.35 1.92 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -33.28 386.43 -10.06 -43.34 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.02 Total: 9.19 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -3.99 Total: 1.34 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.08 Total: -62.45 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.07 Total: -13.92 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.28 -10.06 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415954249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.919 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds