Wall clock time and date at job start Tue Mar 31 2020 15:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99878 * 2 1 4 4 N 1.46503 * 109.47301 * 124.99794 * 3 2 1 5 5 C 1.46493 * 120.00158 * 270.00552 * 4 3 2 6 6 C 1.50703 * 109.46843 * 269.99863 * 5 4 3 7 7 H 1.08006 * 120.00151 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99923 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00297 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99898 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47131 * 59.99762 * 10 8 6 12 12 H 1.48502 * 109.47028 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47109 * 299.99674 * 10 8 6 14 14 C 1.34778 * 119.99494 * 90.00041 * 4 3 2 15 15 O 1.21592 * 119.99830 * 180.02562 * 14 4 3 16 16 N 1.34773 * 120.00139 * 0.02562 * 14 4 3 17 17 C 1.39981 * 119.99631 * 185.28841 * 16 14 4 18 18 C 1.38899 * 120.64813 * 212.82070 * 17 16 14 19 19 N 1.31433 * 120.49816 * 180.15257 * 18 17 16 20 20 C 1.32717 * 122.51306 * 359.68983 * 19 18 17 21 21 C 1.37669 * 120.21184 * 0.22757 * 20 19 18 22 22 C 1.39003 * 120.65706 * 32.58256 * 17 16 14 23 23 C 1.50509 * 122.84237 * 179.54237 * 21 20 19 24 24 C 1.52761 * 110.56893 * 17.52284 * 23 21 20 25 25 H 1.08998 * 109.68798 * 68.90269 * 24 23 21 26 26 N 1.46897 * 109.68909 * 189.43966 * 24 23 21 27 27 C 1.53327 * 108.34869 * 309.15670 * 24 23 21 28 28 C 1.50750 * 117.48232 * 180.39987 * 20 19 18 29 29 H 1.08000 * 120.00183 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99857 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.99885 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47163 * 4.99949 * 3 2 1 33 33 H 1.09000 * 109.47531 * 245.00251 * 3 2 1 34 34 H 1.09002 * 109.47192 * 29.99443 * 5 4 3 35 35 H 1.08997 * 109.47543 * 149.99948 * 5 4 3 36 36 H 0.97001 * 120.00126 * 180.02562 * 9 8 6 37 37 H 0.96992 * 120.00699 * 5.28512 * 16 14 4 38 38 H 1.08003 * 119.75145 * 359.90628 * 18 17 16 39 39 H 1.08004 * 120.57969 * 0.11873 * 22 17 16 40 40 H 1.09001 * 109.25510 * 137.80088 * 23 21 20 41 41 H 1.08994 * 109.25659 * 257.24088 * 23 21 20 42 42 H 1.00893 * 110.99694 * 299.99672 * 26 24 23 43 43 H 1.00896 * 110.99875 * 63.95713 * 26 24 23 44 44 H 1.09002 * 109.64342 * 189.56945 * 27 24 23 45 45 H 1.09003 * 109.63862 * 309.98705 * 27 24 23 46 46 H 1.08996 * 109.26150 * 77.44853 * 28 20 19 47 47 H 1.08999 * 109.22434 * 317.99144 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5588 1.8649 2.4248 6 6 2.8441 3.3436 2.4804 7 1 3.3038 3.8370 1.6367 8 6 2.5191 4.0665 3.6086 9 7 1.9598 3.4658 4.6361 10 14 2.8734 5.8993 3.6777 11 1 2.1376 6.5873 2.5865 12 1 2.4325 6.4396 4.9888 13 1 4.3313 6.1282 3.5126 14 6 4.2497 0.8663 0.9823 15 8 5.0216 0.8881 1.9215 16 7 4.6499 0.3764 -0.2077 17 6 5.9155 -0.2082 -0.3339 18 6 6.6271 -0.1063 -1.5224 19 7 7.8140 -0.6589 -1.6387 20 6 8.3904 -1.3262 -0.6468 21 6 7.7448 -1.4666 0.5609 22 6 6.4869 -0.8979 0.7291 23 6 8.3386 -2.2189 1.7214 24 6 9.8435 -2.3991 1.5306 25 1 10.3430 -1.4343 1.6193 26 7 10.3645 -3.3215 2.5483 27 6 10.0867 -2.9809 0.1330 28 6 9.7584 -1.9063 -0.9013 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4027 -0.9314 34 1 1.4887 1.6966 2.5459 35 1 3.0989 1.3604 3.2259 36 1 1.7309 3.9744 5.4297 37 1 4.0610 0.4288 -0.9766 38 1 6.2003 0.4277 -2.3586 39 1 5.9612 -0.9942 1.6676 40 1 8.1568 -1.6629 2.6411 41 1 7.8658 -3.1982 1.7946 42 1 10.1984 -2.9656 3.4776 43 1 9.9686 -4.2429 2.4377 44 1 11.1314 -3.2762 0.0357 45 1 9.4449 -3.8487 -0.0193 46 1 10.5024 -1.1119 -0.8427 47 1 9.7814 -2.3475 -1.8977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415954249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:06 Heat of formation + Delta-G solvation = 4.064858 kcal Electronic energy + Delta-G solvation = -28095.171172 eV Core-core repulsion = 24277.068417 eV Total energy + Delta-G solvation = -3818.102755 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.16021 -41.00421 -38.45881 -37.41497 -36.20122 -35.04787 -33.94224 -33.62063 -33.39731 -30.51341 -29.13470 -28.91331 -27.02154 -25.62722 -24.66226 -23.69048 -23.39383 -21.55936 -20.95009 -20.67837 -19.37227 -18.59871 -18.20840 -17.58974 -17.41733 -16.89219 -16.52896 -16.29764 -16.11870 -15.96135 -15.66301 -15.22056 -14.85296 -14.63579 -14.50527 -14.32316 -14.24741 -14.18708 -14.05677 -13.53270 -13.33864 -13.10602 -12.99660 -12.86095 -12.61300 -12.38607 -12.31671 -12.23369 -12.03381 -11.78216 -11.72785 -11.56098 -11.29538 -10.65921 -10.52749 -10.38441 -10.24068 -9.71776 -9.63894 -9.07379 -8.23849 -6.38506 0.03465 0.21585 1.20725 1.35458 1.39213 1.46464 1.71483 2.07851 2.36778 2.75601 2.92266 3.06271 3.30939 3.47639 3.72498 3.81703 3.86590 3.88059 3.95837 3.98084 4.15603 4.28062 4.29257 4.40472 4.47701 4.54737 4.65717 4.71171 4.74909 4.88232 4.94071 4.95276 5.00806 5.05985 5.14069 5.20741 5.26722 5.32651 5.40878 5.46108 5.65976 5.69914 5.78273 5.85696 5.98240 6.03382 6.20326 6.58538 6.69718 6.93400 6.94321 7.28086 7.52992 8.82669 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.003104 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.588396 B = 9018.663517 C =10110.906358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.188 4.188 3 C 0.133 3.867 4 N -0.605 5.605 5 C 0.282 3.718 6 C -0.545 4.545 7 H 0.052 0.948 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.964 3.036 11 H -0.259 1.259 12 H -0.278 1.278 13 H -0.281 1.281 14 C 0.696 3.304 15 O -0.618 6.618 16 N -0.668 5.668 17 C 0.111 3.889 18 C 0.079 3.921 19 N -0.477 5.477 20 C 0.098 3.902 21 C -0.106 4.106 22 C -0.104 4.104 23 C -0.105 4.105 24 C 0.096 3.904 25 H 0.075 0.925 26 N -0.841 5.841 27 C -0.103 4.103 28 C -0.057 4.057 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.028 0.972 35 H -0.002 1.002 36 H 0.267 0.733 37 H 0.421 0.579 38 H 0.185 0.815 39 H 0.118 0.882 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.347 0.653 43 H 0.348 0.652 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.472 -13.958 -13.980 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.207 4.207 3 C 0.011 3.989 4 N -0.338 5.338 5 C 0.161 3.839 6 C -0.583 4.583 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.789 3.211 11 H -0.184 1.184 12 H -0.203 1.203 13 H -0.207 1.207 14 C 0.397 3.603 15 O -0.498 6.498 16 N -0.320 5.320 17 C 0.013 3.987 18 C -0.083 4.083 19 N -0.185 5.185 20 C -0.038 4.038 21 C -0.109 4.109 22 C -0.133 4.133 23 C -0.145 4.145 24 C -0.016 4.016 25 H 0.093 0.907 26 N -0.370 5.370 27 C -0.141 4.141 28 C -0.095 4.095 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.046 0.954 35 H 0.017 0.983 36 H 0.076 0.924 37 H 0.262 0.738 38 H 0.202 0.798 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.160 0.840 43 H 0.162 0.838 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.106 0.894 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.014 -13.660 -14.191 22.097 hybrid contribution -2.205 1.122 1.560 2.925 sum 7.809 -12.538 -12.631 19.435 Atomic orbital electron populations 1.24069 0.95425 1.03032 0.97508 1.23281 0.96907 0.97971 1.02581 1.20814 0.92819 0.96811 0.88490 1.47426 1.09494 1.62778 1.14071 1.18638 0.93911 0.92401 0.78979 1.21687 1.40711 0.94516 1.01433 0.92945 1.25794 0.94642 1.03537 0.94838 1.70032 1.42663 1.38129 1.05736 0.85521 0.78344 0.79294 0.77969 1.18382 1.20275 1.20665 1.16094 0.82793 0.78420 0.82953 1.90872 1.54054 1.63624 1.41260 1.42504 1.16253 1.61630 1.11580 1.18747 0.87093 0.95983 0.96921 1.22803 0.90078 0.98914 0.96547 1.67548 1.10113 1.08732 1.32104 1.21425 0.97692 0.96366 0.88276 1.20429 0.93991 0.99569 0.96881 1.21664 0.96548 0.95889 0.99193 1.21349 0.98547 0.99830 0.94790 1.21399 0.90002 0.96906 0.93261 0.90670 1.58983 1.65129 1.06051 1.06829 1.21549 1.03462 0.97356 0.91727 1.20327 0.89681 0.98505 1.01003 0.87952 0.86600 0.87342 0.89593 0.88167 0.95429 0.98346 0.92362 0.73803 0.79766 0.86421 0.91845 0.89505 0.84012 0.83845 0.88629 0.91058 0.89419 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 14.32 67.78 0.97 -2.71 16 2 C -0.19 -4.83 9.85 25.65 0.25 -4.58 16 3 C 0.13 3.97 5.66 85.63 0.48 4.46 16 4 N -0.60 -25.34 2.44 -848.58 -2.07 -27.41 16 5 C 0.28 15.05 5.16 85.64 0.44 15.49 16 6 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 7 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 8 C 0.01 0.64 5.46 84.66 0.46 1.11 16 9 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 10 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 11 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 14 C 0.70 29.56 8.04 179.06 1.44 31.00 16 15 O -0.62 -32.49 13.62 -4.01 -0.05 -32.54 16 16 N -0.67 -20.82 5.24 -317.02 -1.66 -22.48 16 17 C 0.11 3.43 6.31 38.18 0.24 3.68 16 18 C 0.08 2.06 11.14 84.91 0.95 3.00 16 19 N -0.48 -12.73 10.17 -183.45 -1.87 -14.60 16 20 C 0.10 2.47 6.62 42.31 0.28 2.75 16 21 C -0.11 -2.90 5.74 -19.86 -0.11 -3.01 16 22 C -0.10 -3.49 8.35 22.65 0.19 -3.31 16 23 C -0.11 -2.31 5.26 29.71 0.16 -2.15 16 24 C 0.10 1.69 3.28 44.95 0.15 1.84 16 25 H 0.08 1.51 8.10 -2.39 -0.02 1.49 16 26 N -0.84 -12.28 9.28 -168.56 -1.56 -13.84 16 27 C -0.10 -1.50 5.52 30.61 0.17 -1.33 16 28 C -0.06 -1.01 5.91 29.77 0.18 -0.83 16 29 H 0.10 2.28 7.84 -2.91 -0.02 2.26 16 30 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.11 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.09 2.70 7.72 -2.39 -0.02 2.68 16 33 H 0.10 2.26 6.29 -2.39 -0.02 2.25 16 34 H 0.03 1.49 8.07 -2.39 -0.02 1.48 16 35 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 36 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.42 9.70 6.51 -92.71 -0.60 9.10 16 38 H 0.19 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.12 4.64 6.47 -2.91 -0.02 4.62 16 40 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.35 4.80 9.04 -89.70 -0.81 3.99 16 43 H 0.35 4.04 8.98 -89.70 -0.81 3.24 16 44 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.07 0.97 8.10 -2.39 -0.02 0.95 16 46 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -75.20 386.43 0.37 -74.84 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -1.21 Total: 30.01 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 6.48 Total: 14.47 kcal Atomic # 7 Polarization: -126.74 SS G_CDS: -6.88 Total: -133.61 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.05 Total: -32.54 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -75.20 0.37 -74.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415954249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.900 kcal (2) G-P(sol) polarization free energy of solvation -75.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds