Wall clock time and date at job start Tue Mar 31 2020 15:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46793 * 2 1 4 4 N 1.46494 * 109.46865 * 179.97438 * 3 2 1 5 5 C 1.38423 * 126.37697 * 270.16761 * 4 3 2 6 6 C 1.38704 * 133.92217 * 359.90399 * 5 4 3 7 7 C 1.37932 * 119.84611 * 180.34600 * 6 5 4 8 8 C 1.38721 * 120.44049 * 0.02562 * 7 6 5 9 9 C 1.37657 * 120.51316 * 0.02562 * 8 7 6 10 10 C 1.39739 * 119.77137 * 359.97438 * 9 8 7 11 11 N 1.35842 * 133.42339 * 179.97438 * 10 9 8 12 12 C 1.30850 * 109.62573 * 180.02562 * 11 10 9 13 13 N 1.38461 * 125.05111 * 179.97438 * 12 11 10 14 14 C 1.34781 * 120.00226 * 0.03130 * 13 12 11 15 15 O 1.21261 * 119.99748 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00261 * 180.02562 * 14 13 12 17 17 H 1.09005 * 109.47168 * 319.99959 * 16 14 13 18 18 N 1.46901 * 109.47231 * 199.99856 * 16 14 13 19 19 C 1.53006 * 109.47471 * 79.99562 * 16 14 13 20 20 C 1.52999 * 109.46997 * 185.00271 * 19 16 14 21 21 C 1.50706 * 109.46573 * 180.02562 * 20 19 16 22 22 H 1.07995 * 120.00167 * 359.72054 * 21 20 19 23 23 C 1.37879 * 119.99394 * 179.97438 * 21 20 19 24 24 N 1.31514 * 119.99350 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00608 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47353 * 89.99430 * 25 23 21 27 27 H 1.48494 * 109.47031 * 209.99977 * 25 23 21 28 28 H 1.48504 * 109.46680 * 329.99678 * 25 23 21 29 29 H 1.09001 * 109.46887 * 299.99357 * 1 2 3 30 30 H 1.08997 * 109.47588 * 59.99926 * 1 2 3 31 31 H 1.09010 * 109.46981 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46887 * 240.00643 * 2 1 3 33 33 H 1.08992 * 109.47013 * 120.00459 * 2 1 3 34 34 H 1.09001 * 109.46879 * 60.00637 * 3 2 1 35 35 H 1.08991 * 109.47480 * 300.00524 * 3 2 1 36 36 H 1.08003 * 120.07408 * 0.36806 * 6 5 4 37 37 H 1.08000 * 119.77325 * 180.02562 * 7 6 5 38 38 H 1.08004 * 119.74597 * 179.97438 * 8 7 6 39 39 H 1.07990 * 120.11798 * 180.02562 * 9 8 7 40 40 H 0.97005 * 120.00132 * 180.02562 * 13 12 11 41 41 H 1.00899 * 110.99814 * 176.04311 * 18 16 14 42 42 H 1.00892 * 110.99802 * 299.99727 * 18 16 14 43 43 H 1.09000 * 109.46866 * 65.00059 * 19 16 14 44 44 H 1.09001 * 109.46611 * 305.00176 * 19 16 14 45 45 H 1.09000 * 109.47486 * 60.00167 * 20 19 16 46 46 H 1.09001 * 109.47362 * 299.99445 * 20 19 16 47 47 H 0.97005 * 119.99656 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.3254 1.4395 1.1154 6 6 4.0911 1.4373 2.4826 7 6 5.1543 1.4416 3.3612 8 6 6.4580 1.4485 2.8871 9 6 6.7094 1.4517 1.5336 10 6 5.6436 1.4475 0.6299 11 7 5.5695 1.4495 -0.7265 12 6 4.3149 1.4439 -1.0981 13 7 3.8743 1.4445 -2.4108 14 6 4.7664 1.4507 -3.4211 15 8 5.9549 1.4562 -3.1804 16 6 4.2870 1.4519 -4.8497 17 1 3.4278 0.7878 -4.9452 18 7 5.3670 0.9849 -5.7291 19 6 3.8810 2.8717 -5.2503 20 6 3.2782 2.8522 -6.6564 21 6 2.8789 4.2508 -7.0511 22 1 3.0349 5.0706 -6.3657 23 6 2.3096 4.4827 -8.2853 24 7 1.9607 5.7031 -8.6295 25 14 2.0326 3.0634 -9.4678 26 1 0.6875 2.4792 -9.2335 27 1 2.1207 3.5588 -10.8649 28 1 3.0694 2.0239 -9.2448 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9564 -0.8898 36 1 3.0785 1.4320 2.8581 37 1 4.9705 1.4395 4.4255 38 1 7.2821 1.4522 3.5851 39 1 7.7268 1.4567 1.1715 40 1 2.9236 1.4404 -2.6033 41 1 5.0506 0.9153 -6.6847 42 1 6.1754 1.5846 -5.6587 43 1 4.7593 3.5172 -5.2403 44 1 3.1429 3.2514 -4.5437 45 1 2.3999 2.2067 -6.6663 46 1 4.0162 2.4724 -7.3629 47 1 1.5598 5.8662 -9.4976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424085194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:01 Heat of formation + Delta-G solvation = 37.082575 kcal Electronic energy + Delta-G solvation = -27859.232327 eV Core-core repulsion = 24042.561328 eV Total energy + Delta-G solvation = -3816.670999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.37172 -39.88800 -37.61460 -36.02715 -35.62768 -34.60084 -32.87977 -32.71052 -30.41800 -30.29104 -29.05245 -27.12525 -26.71664 -24.53089 -22.74721 -22.47146 -22.34858 -20.94987 -20.30423 -19.93235 -18.34195 -17.54046 -17.15644 -16.80522 -16.42285 -16.06348 -15.49238 -14.96813 -14.76444 -14.64112 -14.42476 -14.32789 -14.26155 -13.99556 -13.76495 -13.49628 -13.09037 -12.78581 -12.74929 -12.64186 -12.19943 -12.10905 -12.00707 -11.79786 -11.55008 -11.47831 -11.32616 -11.05508 -10.53658 -10.50714 -10.25249 -10.17390 -9.95596 -9.91147 -9.45931 -9.38181 -8.67868 -8.45618 -8.32860 -7.89358 -6.16986 -4.17212 0.85221 1.37754 1.88612 2.37836 2.90069 3.07219 3.20116 3.29283 3.29874 3.81882 4.09655 4.16278 4.32314 4.35066 4.52042 4.67767 4.76221 4.80237 4.87007 4.89980 4.99955 5.12580 5.15383 5.21812 5.27621 5.29196 5.33597 5.42739 5.51413 5.52415 5.60423 5.75639 5.78437 5.98790 6.00577 6.17268 6.25171 6.38833 6.44663 6.54425 6.66516 6.98093 7.00123 7.00605 7.12354 7.29076 7.59217 7.68125 7.92064 8.18429 8.38405 8.86793 9.43740 10.96147 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.002717 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.717624 B =10302.004217 C =11205.439301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C 0.107 3.893 4 N -0.505 5.505 5 C 0.047 3.953 6 C -0.106 4.106 7 C -0.113 4.113 8 C -0.127 4.127 9 C -0.069 4.069 10 C 0.066 3.934 11 N -0.477 5.477 12 C 0.515 3.485 13 N -0.644 5.644 14 C 0.523 3.477 15 O -0.458 6.458 16 C 0.081 3.919 17 H 0.101 0.899 18 N -0.829 5.829 19 C -0.132 4.132 20 C -0.010 4.010 21 C -0.526 4.526 22 H 0.071 0.929 23 C 0.068 3.932 24 N -0.899 5.899 25 Si 0.881 3.119 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.265 1.265 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.417 0.583 41 H 0.355 0.645 42 H 0.351 0.649 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.015 0.985 46 H 0.018 0.982 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.318 -12.154 22.569 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.181 4.181 3 C -0.016 4.016 4 N -0.202 5.202 5 C -0.060 4.060 6 C -0.127 4.127 7 C -0.133 4.133 8 C -0.148 4.148 9 C -0.089 4.089 10 C -0.052 4.052 11 N -0.203 5.203 12 C 0.161 3.839 13 N -0.298 5.298 14 C 0.308 3.692 15 O -0.322 6.322 16 C -0.035 4.035 17 H 0.119 0.881 18 N -0.362 5.362 19 C -0.171 4.171 20 C -0.047 4.047 21 C -0.564 4.564 22 H 0.090 0.910 23 C -0.134 4.134 24 N -0.538 5.538 25 Si 0.709 3.291 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.189 1.189 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.136 0.864 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.254 0.746 41 H 0.170 0.830 42 H 0.165 0.835 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.033 0.967 46 H 0.036 0.964 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.095 -12.695 22.363 25.716 hybrid contribution -1.841 0.397 -0.812 2.050 sum -1.745 -12.298 21.551 24.875 Atomic orbital electron populations 1.21710 0.93960 1.02689 1.02480 1.21959 0.97024 0.95586 1.03554 1.21933 0.76082 0.98644 1.04907 1.45185 1.06411 1.64467 1.04131 1.18641 0.90862 1.07807 0.88700 1.19834 0.99526 1.04806 0.88544 1.20791 0.91989 1.01560 0.98953 1.20844 0.96874 1.02474 0.94575 1.20266 0.97509 0.99820 0.91324 1.19071 0.92181 1.04065 0.89929 1.71115 1.13441 1.25887 1.09897 1.19661 0.85260 0.97393 0.81622 1.42922 1.11736 1.74493 1.00604 1.21129 0.86166 0.75466 0.86431 1.90800 1.15437 1.42386 1.83617 1.21467 0.95500 0.98717 0.87793 0.88075 1.58704 1.07651 1.57549 1.12334 1.22260 1.01501 0.92875 1.00498 1.19577 0.95475 0.98427 0.91253 1.21045 1.40868 0.92540 1.01913 0.91045 1.25048 0.94840 0.95579 0.97966 1.69912 1.42068 1.20024 1.21770 0.86760 0.79022 0.82906 0.80447 1.20275 1.21295 1.18921 0.92269 0.91933 0.91838 0.91177 0.91028 0.88662 0.89017 0.86382 0.85530 0.85490 0.85311 0.74605 0.82964 0.83518 0.91625 0.91925 0.96711 0.96416 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.14 -0.94 6.26 -26.73 -0.17 -1.11 16 3 C 0.11 0.80 5.93 -4.04 -0.02 0.77 16 4 N -0.51 -5.89 2.83 -114.97 -0.33 -6.22 16 5 C 0.05 0.60 6.87 -83.87 -0.58 0.02 16 6 C -0.11 -1.03 10.04 -39.52 -0.40 -1.43 16 7 C -0.11 -0.99 10.03 -39.52 -0.40 -1.38 16 8 C -0.13 -1.22 10.01 -39.62 -0.40 -1.61 16 9 C -0.07 -0.87 10.10 -39.23 -0.40 -1.26 16 10 C 0.07 1.00 7.22 -84.69 -0.61 0.39 16 11 N -0.48 -8.42 9.36 -11.42 -0.11 -8.52 16 12 C 0.51 7.60 8.38 -319.44 -2.68 4.93 16 13 N -0.64 -8.48 5.37 -12.60 -0.07 -8.55 16 14 C 0.52 8.38 7.04 -10.99 -0.08 8.30 16 15 O -0.46 -9.07 14.87 5.57 0.08 -8.99 16 16 C 0.08 1.21 3.21 -68.86 -0.22 0.99 16 17 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 18 N -0.83 -12.73 8.94 -5.65 -0.05 -12.78 16 19 C -0.13 -2.33 4.78 -26.73 -0.13 -2.46 16 20 C -0.01 -0.21 3.81 -27.88 -0.11 -0.32 16 21 C -0.53 -14.14 9.66 -34.44 -0.33 -14.48 16 22 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 23 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 24 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 25 Si 0.88 20.51 27.47 -169.99 -4.67 15.84 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 28 H -0.26 -5.78 6.54 56.52 0.37 -5.42 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.58 7.45 -51.93 -0.39 0.19 16 36 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.42 3.96 7.87 -40.82 -0.32 3.64 16 41 H 0.35 5.21 7.55 -39.29 -0.30 4.92 16 42 H 0.35 5.56 8.58 -39.30 -0.34 5.22 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 46 H 0.02 0.37 5.93 -51.93 -0.31 0.07 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 389.02 15.07 5.86 5.86 Total: -1.00 -35.23 389.02 -11.86 -47.09 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -7.13 Total: 9.60 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -6.23 Total: -7.24 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.22 Total: -62.16 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.23 -11.86 -47.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424085194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.170 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds