Wall clock time and date at job start Tue Mar 31 2020 15:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46793 * 2 1 4 4 N 1.46494 * 109.46865 * 179.97438 * 3 2 1 5 5 C 1.38423 * 126.37697 * 270.16761 * 4 3 2 6 6 C 1.38704 * 133.92217 * 359.90399 * 5 4 3 7 7 C 1.37932 * 119.84611 * 180.34600 * 6 5 4 8 8 C 1.38721 * 120.44049 * 0.02562 * 7 6 5 9 9 C 1.37657 * 120.51316 * 0.02562 * 8 7 6 10 10 C 1.39739 * 119.77137 * 359.97438 * 9 8 7 11 11 N 1.35842 * 133.42339 * 179.97438 * 10 9 8 12 12 C 1.30850 * 109.62573 * 180.02562 * 11 10 9 13 13 N 1.38461 * 125.05111 * 179.97438 * 12 11 10 14 14 C 1.34781 * 120.00226 * 0.03130 * 13 12 11 15 15 O 1.21261 * 119.99748 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00261 * 180.02562 * 14 13 12 17 17 H 1.09005 * 109.47168 * 319.99959 * 16 14 13 18 18 N 1.46901 * 109.47231 * 199.99856 * 16 14 13 19 19 C 1.53006 * 109.47471 * 79.99562 * 16 14 13 20 20 C 1.52999 * 109.46997 * 185.00271 * 19 16 14 21 21 C 1.50706 * 109.46573 * 180.02562 * 20 19 16 22 22 H 1.07995 * 120.00167 * 359.72054 * 21 20 19 23 23 C 1.37879 * 119.99394 * 179.97438 * 21 20 19 24 24 N 1.31514 * 119.99350 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00608 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47353 * 89.99430 * 25 23 21 27 27 H 1.48494 * 109.47031 * 209.99977 * 25 23 21 28 28 H 1.48504 * 109.46680 * 329.99678 * 25 23 21 29 29 H 1.09001 * 109.46887 * 299.99357 * 1 2 3 30 30 H 1.08997 * 109.47588 * 59.99926 * 1 2 3 31 31 H 1.09010 * 109.46981 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46887 * 240.00643 * 2 1 3 33 33 H 1.08992 * 109.47013 * 120.00459 * 2 1 3 34 34 H 1.09001 * 109.46879 * 60.00637 * 3 2 1 35 35 H 1.08991 * 109.47480 * 300.00524 * 3 2 1 36 36 H 1.08003 * 120.07408 * 0.36806 * 6 5 4 37 37 H 1.08000 * 119.77325 * 180.02562 * 7 6 5 38 38 H 1.08004 * 119.74597 * 179.97438 * 8 7 6 39 39 H 1.07990 * 120.11798 * 180.02562 * 9 8 7 40 40 H 0.97005 * 120.00132 * 180.02562 * 13 12 11 41 41 H 1.00899 * 110.99814 * 176.04311 * 18 16 14 42 42 H 1.00892 * 110.99802 * 299.99727 * 18 16 14 43 43 H 1.09000 * 109.46866 * 65.00059 * 19 16 14 44 44 H 1.09001 * 109.46611 * 305.00176 * 19 16 14 45 45 H 1.09000 * 109.47486 * 60.00167 * 20 19 16 46 46 H 1.09001 * 109.47362 * 299.99445 * 20 19 16 47 47 H 0.97005 * 119.99656 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.3254 1.4395 1.1154 6 6 4.0911 1.4373 2.4826 7 6 5.1543 1.4416 3.3612 8 6 6.4580 1.4485 2.8871 9 6 6.7094 1.4517 1.5336 10 6 5.6436 1.4475 0.6299 11 7 5.5695 1.4495 -0.7265 12 6 4.3149 1.4439 -1.0981 13 7 3.8743 1.4445 -2.4108 14 6 4.7664 1.4507 -3.4211 15 8 5.9549 1.4562 -3.1804 16 6 4.2870 1.4519 -4.8497 17 1 3.4278 0.7878 -4.9452 18 7 5.3670 0.9849 -5.7291 19 6 3.8810 2.8717 -5.2503 20 6 3.2782 2.8522 -6.6564 21 6 2.8789 4.2508 -7.0511 22 1 3.0349 5.0706 -6.3657 23 6 2.3096 4.4827 -8.2853 24 7 1.9607 5.7031 -8.6295 25 14 2.0326 3.0634 -9.4678 26 1 0.6875 2.4792 -9.2335 27 1 2.1207 3.5588 -10.8649 28 1 3.0694 2.0239 -9.2448 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9564 -0.8898 36 1 3.0785 1.4320 2.8581 37 1 4.9705 1.4395 4.4255 38 1 7.2821 1.4522 3.5851 39 1 7.7268 1.4567 1.1715 40 1 2.9236 1.4404 -2.6033 41 1 5.0506 0.9153 -6.6847 42 1 6.1754 1.5846 -5.6587 43 1 4.7593 3.5172 -5.2403 44 1 3.1429 3.2514 -4.5437 45 1 2.3999 2.2067 -6.6663 46 1 4.0162 2.4724 -7.3629 47 1 1.5598 5.8662 -9.4976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424085194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:00 Heat of formation + Delta-G solvation = 14.833079 kcal Electronic energy + Delta-G solvation = -27860.197138 eV Core-core repulsion = 24042.561328 eV Total energy + Delta-G solvation = -3817.635810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.30929 -41.10154 -38.46774 -37.25434 -36.53944 -35.73642 -34.82149 -33.44869 -32.10999 -31.07732 -30.02107 -28.52088 -27.36367 -26.06495 -23.79826 -23.38293 -23.05140 -22.22154 -21.51378 -21.02675 -19.47288 -18.86293 -18.45083 -17.98735 -17.40709 -17.06794 -16.35026 -16.09501 -16.02002 -15.92373 -15.81817 -15.38175 -15.15883 -14.89049 -14.79218 -14.73721 -14.50212 -14.31067 -13.56117 -13.32998 -13.18381 -13.15670 -12.95788 -12.81177 -12.73281 -12.46973 -12.31675 -12.14310 -11.86602 -11.80847 -11.69605 -11.41740 -11.36094 -11.25909 -11.16755 -10.76657 -10.63359 -9.73395 -9.15711 -8.86881 -8.29293 -6.35189 -0.04482 0.54750 0.92223 1.24641 1.39135 1.42248 1.52859 1.99718 2.02509 2.37101 2.93655 3.06610 3.14824 3.51148 3.57783 3.64493 3.82011 3.97963 4.01144 4.09405 4.11265 4.20280 4.22240 4.34917 4.48322 4.52352 4.53490 4.60383 4.68075 4.77933 4.80382 4.85870 4.92373 5.08046 5.08895 5.21039 5.34862 5.36206 5.40112 5.46024 5.59014 5.60369 5.62765 5.79459 6.01104 6.05266 6.16845 6.25159 6.45008 6.73752 6.84218 7.10092 7.29770 8.87551 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.002717 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.717624 B =10302.004217 C =11205.439301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.098 3.902 4 N -0.494 5.494 5 C 0.038 3.962 6 C -0.106 4.106 7 C -0.103 4.103 8 C -0.118 4.118 9 C -0.097 4.097 10 C 0.020 3.980 11 N -0.531 5.531 12 C 0.494 3.506 13 N -0.629 5.629 14 C 0.524 3.476 15 O -0.503 6.503 16 C 0.095 3.905 17 H 0.135 0.865 18 N -0.830 5.830 19 C -0.121 4.121 20 C -0.006 4.006 21 C -0.535 4.535 22 H 0.025 0.975 23 C 0.001 3.999 24 N -0.954 5.954 25 Si 0.954 3.046 26 H -0.263 1.263 27 H -0.293 1.293 28 H -0.236 1.236 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.150 0.850 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.120 0.880 40 H 0.433 0.567 41 H 0.360 0.640 42 H 0.346 0.654 43 H 0.041 0.959 44 H 0.068 0.932 45 H 0.037 0.963 46 H 0.027 0.973 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 -14.504 24.438 28.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.022 4.022 4 N -0.190 5.190 5 C -0.069 4.069 6 C -0.126 4.126 7 C -0.122 4.122 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.098 4.098 11 N -0.258 5.258 12 C 0.139 3.861 13 N -0.284 5.284 14 C 0.310 3.690 15 O -0.371 6.371 16 C -0.021 4.021 17 H 0.152 0.848 18 N -0.363 5.363 19 C -0.161 4.161 20 C -0.043 4.043 21 C -0.573 4.573 22 H 0.043 0.957 23 C -0.195 4.195 24 N -0.595 5.595 25 Si 0.777 3.223 26 H -0.188 1.188 27 H -0.219 1.219 28 H -0.158 1.158 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.167 0.833 37 H 0.184 0.816 38 H 0.175 0.825 39 H 0.139 0.861 40 H 0.274 0.726 41 H 0.177 0.823 42 H 0.160 0.840 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.817 -15.066 24.275 28.628 hybrid contribution -1.229 1.222 -1.186 2.100 sum -3.046 -13.844 23.089 27.093 Atomic orbital electron populations 1.21687 0.92466 1.03041 1.03200 1.21882 0.98089 0.94624 1.02729 1.22316 0.73659 0.99712 1.06540 1.45303 1.07588 1.63265 1.02887 1.19004 0.90028 1.07958 0.89955 1.20282 1.01535 1.03644 0.87182 1.21320 0.91094 0.99031 1.00792 1.21240 0.98623 1.00345 0.93553 1.20485 0.96917 1.01631 0.92661 1.19506 0.94356 1.06409 0.89544 1.70940 1.15748 1.27244 1.11894 1.19656 0.85510 0.98421 0.82464 1.42626 1.12230 1.73585 0.99922 1.21281 0.85812 0.74671 0.87209 1.90786 1.17372 1.44616 1.84322 1.21390 0.96347 0.97292 0.87071 0.84771 1.58719 1.07573 1.57287 1.12748 1.22071 1.00463 0.94555 0.98966 1.19510 0.96565 0.95103 0.93123 1.21435 1.40336 0.94282 1.01219 0.95681 1.26101 0.94582 0.98622 1.00235 1.70091 1.43874 1.22948 1.22568 0.85600 0.80248 0.79511 0.76929 1.18771 1.21914 1.15847 0.91196 0.91579 0.91683 0.92340 0.91591 0.86637 0.87834 0.83282 0.81584 0.82526 0.86150 0.72611 0.82321 0.84046 0.94005 0.91367 0.94477 0.95465 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.13 -1.50 6.26 30.60 0.19 -1.31 16 3 C 0.10 1.27 5.93 86.38 0.51 1.78 16 4 N -0.49 -11.21 2.83 -517.67 -1.46 -12.67 16 5 C 0.04 0.94 6.87 38.76 0.27 1.21 16 6 C -0.11 -1.77 10.04 22.31 0.22 -1.54 16 7 C -0.10 -1.44 10.03 22.31 0.22 -1.22 16 8 C -0.12 -2.03 10.01 22.25 0.22 -1.81 16 9 C -0.10 -2.50 10.10 22.50 0.23 -2.28 16 10 C 0.02 0.62 7.22 39.43 0.28 0.91 16 11 N -0.53 -19.77 9.36 -190.03 -1.78 -21.55 16 12 C 0.49 14.91 8.38 260.31 2.18 17.09 16 13 N -0.63 -16.47 5.37 -312.16 -1.68 -18.15 16 14 C 0.52 16.90 7.04 87.65 0.62 17.52 16 15 O -0.50 -20.74 14.87 -2.97 -0.04 -20.78 16 16 C 0.09 2.70 3.21 44.17 0.14 2.84 16 17 H 0.13 2.99 8.14 -2.38 -0.02 2.97 16 18 N -0.83 -24.52 8.94 -171.79 -1.54 -26.05 16 19 C -0.12 -4.21 4.78 30.60 0.15 -4.06 16 20 C -0.01 -0.23 3.81 29.85 0.11 -0.11 16 21 C -0.53 -29.20 9.66 25.60 0.25 -28.95 16 22 H 0.02 1.54 7.99 -2.91 -0.02 1.52 16 23 C 0.00 0.07 5.47 84.66 0.46 0.53 16 24 N -0.95 -58.62 13.96 21.45 0.30 -58.32 16 25 Si 0.95 41.30 27.47 68.60 1.88 43.18 16 26 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 27 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 28 H -0.24 -9.02 6.54 99.48 0.65 -8.37 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.48 8.14 -2.38 -0.02 0.47 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 1.09 7.45 -2.39 -0.02 1.07 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.12 3.09 8.06 -2.92 -0.02 3.07 16 40 H 0.43 7.70 7.87 -92.70 -0.73 6.97 16 41 H 0.36 9.77 7.55 -89.69 -0.68 9.09 16 42 H 0.35 10.99 8.58 -89.70 -0.77 10.22 16 43 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 45 H 0.04 1.38 7.57 -2.39 -0.02 1.36 16 46 H 0.03 1.07 5.93 -2.39 -0.01 1.06 16 47 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -82.23 389.02 1.24 -80.99 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: -1.22 Total: 33.13 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 6.78 Total: 0.21 kcal Atomic # 7 Polarization: -130.59 SS G_CDS: -6.16 Total: -136.74 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.04 Total: -20.78 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.88 Total: 43.18 kcal Total: -82.23 1.24 -80.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424085194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.827 kcal (2) G-P(sol) polarization free energy of solvation -82.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds