Wall clock time and date at job start Tue Mar 31 2020 15:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46963 * 2 1 4 4 N 1.46504 * 109.47191 * 180.02562 * 3 2 1 5 5 C 1.38423 * 126.36970 * 270.00166 * 4 3 2 6 6 C 1.38693 * 133.92837 * 0.04058 * 5 4 3 7 7 C 1.37931 * 119.85205 * 179.97438 * 6 5 4 8 8 C 1.38733 * 120.43751 * 0.02562 * 7 6 5 9 9 C 1.37654 * 120.50590 * 359.97438 * 8 7 6 10 10 C 1.39739 * 119.77601 * 359.97438 * 9 8 7 11 11 N 1.35840 * 133.41707 * 180.33166 * 10 9 8 12 12 C 1.30851 * 109.62322 * 180.09192 * 11 10 9 13 13 N 1.38462 * 125.05647 * 179.86405 * 12 11 10 14 14 C 1.34784 * 119.99621 * 359.69987 * 13 12 11 15 15 O 1.21256 * 119.99974 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99961 * 179.97438 * 14 13 12 17 17 H 1.09000 * 109.47153 * 39.99352 * 16 14 13 18 18 N 1.46893 * 109.47248 * 160.00051 * 16 14 13 19 19 C 1.53005 * 109.47080 * 280.00010 * 16 14 13 20 20 C 1.52996 * 109.47310 * 174.99812 * 19 16 14 21 21 C 1.50699 * 109.47433 * 180.02562 * 20 19 16 22 22 H 1.07999 * 119.99582 * 359.97438 * 21 20 19 23 23 C 1.37873 * 120.00248 * 180.02562 * 21 20 19 24 24 N 1.31517 * 119.99824 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00135 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47147 * 89.99519 * 25 23 21 27 27 H 1.48499 * 109.46935 * 209.99591 * 25 23 21 28 28 H 1.48493 * 109.46950 * 329.99383 * 25 23 21 29 29 H 1.09000 * 109.47164 * 299.99821 * 1 2 3 30 30 H 1.09010 * 109.46957 * 59.99796 * 1 2 3 31 31 H 1.08999 * 109.46834 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47164 * 240.00179 * 2 1 3 33 33 H 1.08994 * 109.47211 * 120.00112 * 2 1 3 34 34 H 1.09000 * 109.47035 * 60.00100 * 3 2 1 35 35 H 1.09002 * 109.47733 * 299.99737 * 3 2 1 36 36 H 1.08004 * 120.07628 * 359.97438 * 6 5 4 37 37 H 1.07994 * 119.78170 * 179.97438 * 7 6 5 38 38 H 1.07997 * 119.74297 * 179.97438 * 8 7 6 39 39 H 1.08006 * 120.11192 * 180.02562 * 9 8 7 40 40 H 0.96995 * 120.00308 * 179.97438 * 13 12 11 41 41 H 1.00899 * 110.99966 * 59.99880 * 18 16 14 42 42 H 1.00906 * 111.00310 * 183.95601 * 18 16 14 43 43 H 1.08999 * 109.46842 * 294.99900 * 19 16 14 44 44 H 1.08999 * 109.46967 * 54.99875 * 19 16 14 45 45 H 1.09005 * 109.47136 * 300.00285 * 20 19 16 46 46 H 1.09002 * 109.46992 * 59.99600 * 20 19 16 47 47 H 0.96999 * 119.99562 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3263 1.4424 1.1136 6 6 4.0932 1.4414 2.4808 7 6 5.1570 1.4410 3.3587 8 6 6.4604 1.4421 2.8835 9 6 6.7106 1.4431 1.5299 10 6 5.6441 1.4424 0.6270 11 7 5.5690 1.4373 -0.7293 12 6 4.3141 1.4412 -1.1000 13 7 3.8725 1.4406 -2.4123 14 6 4.7639 1.4417 -3.4233 15 8 5.9525 1.4438 -3.1835 16 6 4.2833 1.4405 -4.8516 17 1 3.4201 2.0995 -4.9451 18 7 5.3597 1.9156 -5.7309 19 6 3.8856 0.0190 -5.2546 20 6 3.2816 0.0375 -6.6601 21 6 2.8893 -1.3624 -7.0569 22 1 3.0547 -2.1833 -6.3748 23 6 2.3202 -1.5954 -8.2909 24 7 2.1193 -0.5958 -9.1216 25 14 1.8347 -3.3308 -8.7829 26 1 0.4337 -3.5903 -8.3643 27 1 1.9462 -3.4770 -10.2564 28 1 2.7381 -4.3045 -8.1191 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.0808 1.4410 2.8573 37 1 4.9742 1.4407 4.4231 38 1 7.2850 1.4422 3.5809 39 1 7.7279 1.4435 1.1669 40 1 2.9217 1.4433 -2.6040 41 1 6.1718 1.3207 -5.6622 42 1 5.0422 1.9853 -6.6861 43 1 4.7678 -0.6211 -5.2466 44 1 3.1504 -0.3666 -4.5483 45 1 2.3994 0.6777 -6.6681 46 1 4.0167 0.4232 -7.3665 47 1 1.7186 -0.7597 -9.9896 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424085199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:04 Heat of formation + Delta-G solvation = 33.033105 kcal Electronic energy + Delta-G solvation = -27876.121000 eV Core-core repulsion = 24059.274403 eV Total energy + Delta-G solvation = -3816.846597 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.34440 -39.81504 -37.58325 -35.94306 -35.51289 -34.54637 -32.92244 -32.67010 -30.27219 -29.98609 -29.00054 -26.87258 -26.62895 -24.49584 -22.76295 -22.47973 -22.31652 -21.03122 -20.32920 -19.86398 -18.27717 -17.49893 -17.08346 -16.55266 -16.21364 -16.00398 -15.43478 -14.92580 -14.68753 -14.58333 -14.46406 -14.38696 -14.17257 -13.97615 -13.70602 -13.28991 -13.13006 -12.74638 -12.58840 -12.27656 -12.12117 -12.09173 -11.90477 -11.70705 -11.49699 -11.25905 -11.16987 -10.99948 -10.74776 -10.50081 -10.21516 -10.15950 -10.07175 -9.73379 -9.36362 -9.28407 -8.49947 -8.32114 -8.30294 -7.86558 -6.14313 -4.17686 0.87355 1.39472 1.92449 2.42776 2.94665 3.12046 3.22940 3.30404 3.33755 3.83845 4.13121 4.19151 4.34500 4.40738 4.58796 4.71879 4.80639 4.84370 4.89978 5.03671 5.05207 5.15507 5.22008 5.27446 5.31966 5.35604 5.41304 5.56259 5.59047 5.62332 5.64148 5.82039 5.83263 6.01189 6.15170 6.23689 6.39824 6.41309 6.46781 6.69263 6.76663 7.03199 7.03834 7.39794 7.45082 7.53828 7.80389 7.82683 7.96127 8.23014 8.25861 8.88142 9.47702 10.96518 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.002752 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.122067 B =10172.437319 C =11328.185643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C 0.108 3.892 4 N -0.506 5.506 5 C 0.047 3.953 6 C -0.106 4.106 7 C -0.114 4.114 8 C -0.127 4.127 9 C -0.070 4.070 10 C 0.067 3.933 11 N -0.477 5.477 12 C 0.515 3.485 13 N -0.644 5.644 14 C 0.522 3.478 15 O -0.459 6.459 16 C 0.084 3.916 17 H 0.101 0.899 18 N -0.829 5.829 19 C -0.139 4.139 20 C 0.025 3.975 21 C -0.525 4.525 22 H 0.055 0.945 23 C 0.059 3.941 24 N -0.892 5.892 25 Si 0.892 3.108 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.417 0.583 41 H 0.348 0.652 42 H 0.358 0.642 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 5.651 23.373 24.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.183 4.183 3 C -0.014 4.014 4 N -0.203 5.203 5 C -0.061 4.061 6 C -0.127 4.127 7 C -0.134 4.134 8 C -0.148 4.148 9 C -0.090 4.090 10 C -0.052 4.052 11 N -0.204 5.204 12 C 0.161 3.839 13 N -0.298 5.298 14 C 0.308 3.692 15 O -0.324 6.324 16 C -0.032 4.032 17 H 0.119 0.881 18 N -0.362 5.362 19 C -0.179 4.179 20 C -0.012 4.012 21 C -0.563 4.563 22 H 0.073 0.927 23 C -0.142 4.142 24 N -0.531 5.531 25 Si 0.720 3.280 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.254 0.746 41 H 0.162 0.838 42 H 0.175 0.825 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.390 6.370 23.130 23.994 hybrid contribution -1.912 -1.919 -0.462 2.748 sum -2.302 4.451 22.668 23.215 Atomic orbital electron populations 1.21701 0.93950 1.02836 1.02274 1.21969 0.97061 0.95498 1.03757 1.21921 0.76070 0.98769 1.04642 1.45203 1.06422 1.64495 1.04138 1.18636 0.90870 1.07838 0.88711 1.19826 0.99506 1.04815 0.88555 1.20787 0.91990 1.01649 0.98934 1.20841 0.96867 1.02512 0.94565 1.20265 0.97501 0.99859 0.91332 1.19076 0.92179 1.04014 0.89952 1.71124 1.13427 1.25971 1.09876 1.19694 0.85248 0.97258 0.81664 1.42970 1.11772 1.74488 1.00559 1.21262 0.86155 0.75293 0.86533 1.90789 1.15472 1.42498 1.83673 1.21435 0.95543 0.98773 0.87418 0.88107 1.58712 1.07435 1.57352 1.12751 1.22437 1.01065 0.92673 1.01716 1.19105 0.95758 0.97634 0.88717 1.21158 1.40751 0.93467 1.00951 0.92700 1.25004 0.95675 0.97067 0.96504 1.69944 1.43778 1.30806 1.08592 0.86583 0.78892 0.84737 0.77766 1.20618 1.21099 1.19854 0.92410 0.91956 0.91725 0.90923 0.91036 0.88755 0.89185 0.86405 0.85557 0.85513 0.85324 0.74613 0.83813 0.82549 0.92294 0.92551 0.96246 0.96233 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.14 -1.09 6.26 -26.73 -0.17 -1.26 16 3 C 0.11 0.83 5.94 -4.04 -0.02 0.81 16 4 N -0.51 -6.02 2.83 -114.97 -0.33 -6.35 16 5 C 0.05 0.60 6.87 -83.88 -0.58 0.02 16 6 C -0.11 -1.05 10.04 -39.53 -0.40 -1.45 16 7 C -0.11 -1.01 10.03 -39.51 -0.40 -1.41 16 8 C -0.13 -1.23 10.01 -39.61 -0.40 -1.63 16 9 C -0.07 -0.88 10.10 -39.23 -0.40 -1.28 16 10 C 0.07 1.02 7.22 -84.69 -0.61 0.41 16 11 N -0.48 -8.57 9.36 -11.42 -0.11 -8.68 16 12 C 0.52 7.79 8.38 -319.44 -2.68 5.11 16 13 N -0.64 -8.82 5.38 -12.59 -0.07 -8.89 16 14 C 0.52 8.72 7.04 -10.98 -0.08 8.65 16 15 O -0.46 -9.38 14.87 5.58 0.08 -9.30 16 16 C 0.08 1.35 3.21 -68.87 -0.22 1.12 16 17 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 18 N -0.83 -13.70 8.94 -5.66 -0.05 -13.75 16 19 C -0.14 -2.58 4.78 -26.73 -0.13 -2.71 16 20 C 0.02 0.58 4.74 -27.89 -0.13 0.45 16 21 C -0.53 -13.98 9.11 -34.44 -0.31 -14.29 16 22 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 23 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 24 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 25 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.56 7.45 -51.93 -0.39 0.17 16 36 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 40 H 0.42 4.21 7.86 -40.82 -0.32 3.89 16 41 H 0.35 5.89 8.58 -39.29 -0.34 5.55 16 42 H 0.36 5.85 7.55 -39.29 -0.30 5.56 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 47 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 392.61 15.07 5.92 5.92 Total: -1.00 -34.20 392.61 -12.24 -46.44 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.16 Total: 9.87 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -6.24 Total: -6.45 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: 0.19 Total: -62.32 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.08 Total: -9.30 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.20 -12.24 -46.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424085199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.470 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds