Wall clock time and date at job start Tue Mar 31 2020 15:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46963 * 2 1 4 4 N 1.46504 * 109.47191 * 180.02562 * 3 2 1 5 5 C 1.38423 * 126.36970 * 270.00166 * 4 3 2 6 6 C 1.38693 * 133.92837 * 0.04058 * 5 4 3 7 7 C 1.37931 * 119.85205 * 179.97438 * 6 5 4 8 8 C 1.38733 * 120.43751 * 0.02562 * 7 6 5 9 9 C 1.37654 * 120.50590 * 359.97438 * 8 7 6 10 10 C 1.39739 * 119.77601 * 359.97438 * 9 8 7 11 11 N 1.35840 * 133.41707 * 180.33166 * 10 9 8 12 12 C 1.30851 * 109.62322 * 180.09192 * 11 10 9 13 13 N 1.38462 * 125.05647 * 179.86405 * 12 11 10 14 14 C 1.34784 * 119.99621 * 359.69987 * 13 12 11 15 15 O 1.21256 * 119.99974 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99961 * 179.97438 * 14 13 12 17 17 H 1.09000 * 109.47153 * 39.99352 * 16 14 13 18 18 N 1.46893 * 109.47248 * 160.00051 * 16 14 13 19 19 C 1.53005 * 109.47080 * 280.00010 * 16 14 13 20 20 C 1.52996 * 109.47310 * 174.99812 * 19 16 14 21 21 C 1.50699 * 109.47433 * 180.02562 * 20 19 16 22 22 H 1.07999 * 119.99582 * 359.97438 * 21 20 19 23 23 C 1.37873 * 120.00248 * 180.02562 * 21 20 19 24 24 N 1.31517 * 119.99824 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00135 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47147 * 89.99519 * 25 23 21 27 27 H 1.48499 * 109.46935 * 209.99591 * 25 23 21 28 28 H 1.48493 * 109.46950 * 329.99383 * 25 23 21 29 29 H 1.09000 * 109.47164 * 299.99821 * 1 2 3 30 30 H 1.09010 * 109.46957 * 59.99796 * 1 2 3 31 31 H 1.08999 * 109.46834 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47164 * 240.00179 * 2 1 3 33 33 H 1.08994 * 109.47211 * 120.00112 * 2 1 3 34 34 H 1.09000 * 109.47035 * 60.00100 * 3 2 1 35 35 H 1.09002 * 109.47733 * 299.99737 * 3 2 1 36 36 H 1.08004 * 120.07628 * 359.97438 * 6 5 4 37 37 H 1.07994 * 119.78170 * 179.97438 * 7 6 5 38 38 H 1.07997 * 119.74297 * 179.97438 * 8 7 6 39 39 H 1.08006 * 120.11192 * 180.02562 * 9 8 7 40 40 H 0.96995 * 120.00308 * 179.97438 * 13 12 11 41 41 H 1.00899 * 110.99966 * 59.99880 * 18 16 14 42 42 H 1.00906 * 111.00310 * 183.95601 * 18 16 14 43 43 H 1.08999 * 109.46842 * 294.99900 * 19 16 14 44 44 H 1.08999 * 109.46967 * 54.99875 * 19 16 14 45 45 H 1.09005 * 109.47136 * 300.00285 * 20 19 16 46 46 H 1.09002 * 109.46992 * 59.99600 * 20 19 16 47 47 H 0.96999 * 119.99562 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3263 1.4424 1.1136 6 6 4.0932 1.4414 2.4808 7 6 5.1570 1.4410 3.3587 8 6 6.4604 1.4421 2.8835 9 6 6.7106 1.4431 1.5299 10 6 5.6441 1.4424 0.6270 11 7 5.5690 1.4373 -0.7293 12 6 4.3141 1.4412 -1.1000 13 7 3.8725 1.4406 -2.4123 14 6 4.7639 1.4417 -3.4233 15 8 5.9525 1.4438 -3.1835 16 6 4.2833 1.4405 -4.8516 17 1 3.4201 2.0995 -4.9451 18 7 5.3597 1.9156 -5.7309 19 6 3.8856 0.0190 -5.2546 20 6 3.2816 0.0375 -6.6601 21 6 2.8893 -1.3624 -7.0569 22 1 3.0547 -2.1833 -6.3748 23 6 2.3202 -1.5954 -8.2909 24 7 2.1193 -0.5958 -9.1216 25 14 1.8347 -3.3308 -8.7829 26 1 0.4337 -3.5903 -8.3643 27 1 1.9462 -3.4770 -10.2564 28 1 2.7381 -4.3045 -8.1191 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.0808 1.4410 2.8573 37 1 4.9742 1.4407 4.4231 38 1 7.2850 1.4422 3.5809 39 1 7.7279 1.4435 1.1669 40 1 2.9217 1.4433 -2.6040 41 1 6.1718 1.3207 -5.6622 42 1 5.0422 1.9853 -6.6861 43 1 4.7678 -0.6211 -5.2466 44 1 3.1504 -0.3666 -4.5483 45 1 2.3994 0.6777 -6.6681 46 1 4.0167 0.4232 -7.3665 47 1 1.7186 -0.7597 -9.9896 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424085199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:03 Heat of formation + Delta-G solvation = 12.849872 kcal Electronic energy + Delta-G solvation = -27876.996211 eV Core-core repulsion = 24059.274403 eV Total energy + Delta-G solvation = -3817.721808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.30585 -41.09521 -38.45864 -37.20268 -36.53391 -35.73182 -34.85517 -33.44929 -31.72082 -31.07104 -29.99012 -28.31164 -27.35629 -26.14502 -23.92022 -23.38370 -23.07397 -22.34223 -21.51510 -21.01523 -19.40377 -18.65393 -18.29775 -17.94033 -17.40985 -17.04950 -16.55029 -16.09686 -16.00541 -15.88205 -15.80715 -15.34945 -15.14927 -14.80574 -14.78771 -14.72894 -14.36068 -14.07907 -13.51929 -13.31869 -13.17985 -13.05420 -12.91390 -12.80758 -12.72827 -12.55925 -12.46634 -12.29247 -11.84190 -11.81291 -11.78278 -11.36374 -11.31474 -11.25692 -11.10369 -10.62183 -10.55874 -9.72141 -9.15180 -8.86312 -8.22009 -6.31682 -0.04033 0.55357 0.92314 1.24717 1.38596 1.40503 1.50314 2.00364 2.02406 2.39377 2.94345 3.12037 3.15628 3.52550 3.58491 3.66752 3.81985 3.98669 4.04679 4.10884 4.15116 4.20229 4.22004 4.35405 4.48497 4.52534 4.60598 4.61599 4.76491 4.77424 4.81715 4.86444 5.05549 5.07846 5.09813 5.21414 5.35379 5.40868 5.46468 5.59629 5.61089 5.65084 5.78987 5.80979 6.02167 6.05406 6.17557 6.20888 6.43567 6.83426 6.84631 7.10058 7.37401 8.88595 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.002752 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.122067 B =10172.437319 C =11328.185643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.101 3.899 4 N -0.494 5.494 5 C 0.039 3.961 6 C -0.105 4.105 7 C -0.103 4.103 8 C -0.118 4.118 9 C -0.097 4.097 10 C 0.020 3.980 11 N -0.531 5.531 12 C 0.494 3.506 13 N -0.629 5.629 14 C 0.527 3.473 15 O -0.502 6.502 16 C 0.095 3.905 17 H 0.124 0.876 18 N -0.830 5.830 19 C -0.122 4.122 20 C 0.031 3.969 21 C -0.544 4.544 22 H 0.053 0.947 23 C 0.008 3.992 24 N -0.925 5.925 25 Si 0.955 3.045 26 H -0.270 1.270 27 H -0.283 1.283 28 H -0.270 1.270 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.150 0.850 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.120 0.880 40 H 0.433 0.567 41 H 0.345 0.655 42 H 0.359 0.641 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.009 0.991 46 H 0.004 0.996 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.781 5.490 26.198 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C -0.020 4.020 4 N -0.190 5.190 5 C -0.069 4.069 6 C -0.126 4.126 7 C -0.122 4.122 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.098 4.098 11 N -0.258 5.258 12 C 0.140 3.860 13 N -0.283 5.283 14 C 0.313 3.687 15 O -0.371 6.371 16 C -0.021 4.021 17 H 0.142 0.858 18 N -0.363 5.363 19 C -0.162 4.162 20 C -0.006 4.006 21 C -0.582 4.582 22 H 0.071 0.929 23 C -0.191 4.191 24 N -0.565 5.565 25 Si 0.781 3.219 26 H -0.196 1.196 27 H -0.209 1.209 28 H -0.195 1.195 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.124 0.876 36 H 0.168 0.832 37 H 0.184 0.816 38 H 0.175 0.825 39 H 0.138 0.862 40 H 0.273 0.727 41 H 0.158 0.842 42 H 0.175 0.825 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.027 0.973 46 H 0.023 0.977 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.422 6.210 25.990 26.831 hybrid contribution -1.273 -1.855 -1.184 2.543 sum -3.694 4.354 24.806 25.455 Atomic orbital electron populations 1.21678 0.92405 1.02916 1.03321 1.21898 0.98216 0.95094 1.02456 1.22303 0.73611 0.99288 1.06755 1.45309 1.07607 1.63260 1.02856 1.19002 0.89986 1.07945 0.89963 1.20282 1.01567 1.03613 0.87133 1.21324 0.91074 0.99023 1.00802 1.21242 0.98648 1.00345 0.93518 1.20485 0.96891 1.01645 0.92679 1.19508 0.94397 1.06425 0.89502 1.70943 1.15708 1.27220 1.11971 1.19642 0.85544 0.98458 0.82395 1.42613 1.12172 1.73590 0.99972 1.21224 0.85808 0.74626 0.87069 1.90775 1.17287 1.44676 1.84325 1.21352 0.96069 0.97536 0.87135 0.85796 1.58724 1.07478 1.57196 1.12855 1.22178 1.00372 0.94239 0.99433 1.18965 0.95020 0.95755 0.90857 1.21596 1.40518 0.94965 1.01149 0.92893 1.25806 0.95785 1.00863 0.96632 1.70048 1.44686 1.32746 1.08981 0.85592 0.78882 0.80139 0.77322 1.19588 1.20888 1.19508 0.90717 0.91557 0.92152 0.93012 0.91633 0.86175 0.87592 0.83207 0.81554 0.82524 0.86176 0.72679 0.84181 0.82511 0.93798 0.91272 0.97275 0.97729 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.14 -1.85 6.26 30.59 0.19 -1.66 16 3 C 0.10 1.32 5.94 86.38 0.51 1.84 16 4 N -0.49 -11.36 2.83 -517.64 -1.46 -12.83 16 5 C 0.04 0.96 6.87 38.76 0.27 1.22 16 6 C -0.11 -1.75 10.04 22.31 0.22 -1.53 16 7 C -0.10 -1.44 10.03 22.32 0.22 -1.21 16 8 C -0.12 -2.03 10.01 22.25 0.22 -1.81 16 9 C -0.10 -2.52 10.10 22.49 0.23 -2.29 16 10 C 0.02 0.62 7.22 39.43 0.28 0.91 16 11 N -0.53 -20.05 9.36 -190.03 -1.78 -21.83 16 12 C 0.49 15.24 8.38 260.31 2.18 17.42 16 13 N -0.63 -17.33 5.38 -312.15 -1.68 -19.00 16 14 C 0.53 17.98 7.04 87.66 0.62 18.60 16 15 O -0.50 -21.46 14.87 -2.96 -0.04 -21.50 16 16 C 0.09 3.04 3.21 44.17 0.14 3.19 16 17 H 0.12 3.42 8.14 -2.39 -0.02 3.41 16 18 N -0.83 -27.99 8.94 -171.81 -1.54 -29.52 16 19 C -0.12 -4.57 4.78 30.59 0.15 -4.43 16 20 C 0.03 1.46 4.74 29.85 0.14 1.60 16 21 C -0.54 -29.12 9.11 25.60 0.23 -28.89 16 22 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 23 C 0.01 0.43 5.46 84.65 0.46 0.89 16 24 N -0.92 -53.00 13.29 21.45 0.28 -52.71 16 25 Si 0.96 42.68 29.54 68.60 2.03 44.71 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.11 1.05 7.45 -2.39 -0.02 1.04 16 36 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.12 3.11 8.06 -2.91 -0.02 3.08 16 40 H 0.43 8.41 7.86 -92.71 -0.73 7.68 16 41 H 0.35 12.12 8.58 -89.69 -0.77 11.35 16 42 H 0.36 11.97 7.55 -89.69 -0.68 11.29 16 43 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 46 H 0.00 0.22 6.87 -2.39 -0.02 0.20 16 47 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -77.24 392.61 1.43 -75.81 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -1.17 Total: 33.68 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 6.79 Total: 3.20 kcal Atomic # 7 Polarization: -129.72 SS G_CDS: -6.17 Total: -135.89 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.04 Total: -21.50 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -77.24 1.43 -75.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424085199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.659 kcal (2) G-P(sol) polarization free energy of solvation -77.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds