Wall clock time and date at job start Tue Mar 31 2020 15:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46847 * 2 1 4 4 N 1.46497 * 109.46929 * 119.99988 * 2 1 3 5 5 N 1.40013 * 125.95410 * 299.97380 * 4 2 1 6 6 C 1.30127 * 109.78704 * 180.02562 * 5 4 2 7 7 C 1.41622 * 108.67398 * 0.02562 * 6 5 4 8 8 C 1.40138 * 133.49067 * 180.28988 * 7 6 5 9 9 C 1.36254 * 119.93456 * 180.12376 * 8 7 6 10 10 C 1.39596 * 120.61927 * 359.53312 * 9 8 7 11 11 N 1.39912 * 119.77896 * 180.23820 * 10 9 8 12 12 C 1.34776 * 119.99479 * 213.61369 * 11 10 9 13 13 O 1.21289 * 120.00372 * 5.27351 * 12 11 10 14 14 C 1.50710 * 119.99390 * 185.27847 * 12 11 10 15 15 H 1.08992 * 109.46931 * 40.00046 * 14 12 11 16 16 N 1.46902 * 109.46947 * 159.99785 * 14 12 11 17 17 C 1.53000 * 109.46825 * 279.99679 * 14 12 11 18 18 C 1.53005 * 109.46626 * 175.00061 * 17 14 12 19 19 C 1.50699 * 109.46814 * 180.02562 * 18 17 14 20 20 H 1.08005 * 120.00315 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99815 * 180.02562 * 19 18 17 22 22 N 1.31507 * 120.00080 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99768 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47101 * 59.99916 * 23 21 19 25 25 H 1.48496 * 109.47209 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47440 * 300.00279 * 23 21 19 27 27 C 1.38232 * 120.44169 * 0.25251 * 10 9 8 28 28 C 1.37176 * 125.95158 * 119.98059 * 4 2 1 29 29 H 1.08998 * 109.47082 * 299.99592 * 1 2 3 30 30 H 1.08994 * 109.47265 * 60.00054 * 1 2 3 31 31 H 1.08997 * 109.46627 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47082 * 240.00408 * 2 1 3 33 33 H 1.08998 * 109.47039 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47509 * 300.00015 * 3 2 1 35 35 H 1.08999 * 109.47430 * 60.00112 * 3 2 1 36 36 H 1.07993 * 125.66498 * 180.02562 * 6 5 4 37 37 H 1.07998 * 120.03475 * 359.95055 * 8 7 6 38 38 H 1.08005 * 119.68900 * 179.76708 * 9 8 7 39 39 H 0.96995 * 119.99919 * 33.61285 * 11 10 9 40 40 H 1.00900 * 111.00150 * 296.04960 * 16 14 12 41 41 H 1.00908 * 110.99447 * 59.99772 * 16 14 12 42 42 H 1.08998 * 109.47386 * 295.00352 * 17 14 12 43 43 H 1.08996 * 109.46776 * 55.00560 * 17 14 12 44 44 H 1.08998 * 109.47476 * 300.00236 * 18 17 14 45 45 H 1.09000 * 109.47105 * 60.00211 * 18 17 14 46 46 H 0.96996 * 119.99756 * 179.97438 * 22 21 19 47 47 H 1.07999 * 120.16959 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7585 -0.3222 2.5217 6 6 2.3461 -1.1527 3.3330 7 6 3.0341 -2.1250 2.5667 8 6 3.8161 -3.2391 2.8999 9 6 4.3631 -4.0050 1.9146 10 6 4.1446 -3.6971 0.5707 11 7 4.7107 -4.4984 -0.4267 12 6 5.1106 -3.9456 -1.5890 13 8 5.0687 -2.7422 -1.7344 14 6 5.6097 -4.8229 -2.7082 15 1 4.9957 -5.7215 -2.7669 16 7 5.5278 -4.0900 -3.9787 17 6 7.0638 -5.2155 -2.4387 18 6 7.5313 -6.2051 -3.5078 19 6 8.9633 -6.5922 -3.2421 20 1 9.4876 -6.1739 -2.3956 21 6 9.6044 -7.4797 -4.0803 22 7 8.9664 -7.9879 -5.1118 23 14 11.3796 -7.9590 -3.7513 24 1 11.4812 -8.5929 -2.4121 25 1 11.8334 -8.9196 -4.7888 26 1 12.2354 -6.7460 -3.7908 27 6 3.3730 -2.6055 0.2188 28 6 2.8099 -1.8108 1.2126 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.3146 -1.1080 4.4116 37 1 3.9874 -3.4888 3.9366 38 1 4.9683 -4.8606 2.1759 39 1 4.8154 -5.4518 -0.2817 40 1 4.5696 -3.8755 -4.2112 41 1 6.0891 -3.2520 -3.9494 42 1 7.6919 -4.3252 -2.4681 43 1 7.1383 -5.6804 -1.4557 44 1 6.9031 -7.0954 -3.4785 45 1 7.4567 -5.7401 -4.4909 46 1 9.4176 -8.6119 -5.7017 47 1 3.2072 -2.3710 -0.8223 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424117289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:43 Heat of formation + Delta-G solvation = 40.957518 kcal Electronic energy + Delta-G solvation = -27539.496838 eV Core-core repulsion = 23722.993869 eV Total energy + Delta-G solvation = -3816.502969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.69925 -40.31406 -37.65668 -35.92075 -35.28404 -34.20328 -32.85630 -31.84318 -30.19391 -29.24475 -29.09813 -27.62286 -26.47443 -24.29703 -23.34145 -22.96246 -21.98510 -20.69534 -20.03526 -19.78846 -18.19368 -17.36840 -16.92659 -16.38353 -16.04389 -15.61527 -15.42949 -15.13147 -14.91728 -14.73055 -14.37939 -14.29391 -14.05871 -13.68290 -13.56666 -13.41153 -12.77425 -12.63119 -12.60770 -12.40201 -12.20106 -12.08289 -11.72482 -11.65094 -11.62561 -11.41793 -10.90594 -10.85920 -10.74286 -10.62531 -10.33337 -10.28595 -10.03545 -9.85625 -9.43678 -9.05947 -8.46449 -8.27765 -8.23806 -7.98703 -5.97089 -3.99542 0.72171 1.34699 2.13036 2.29681 2.64928 3.02140 3.34107 3.38921 3.41233 3.66072 4.10918 4.37544 4.47190 4.59306 4.61502 4.70482 4.73590 4.86573 4.89434 4.98325 5.09909 5.19449 5.24888 5.31089 5.37859 5.38012 5.40950 5.41238 5.51487 5.70409 5.72005 5.80495 5.90665 6.02809 6.12232 6.23909 6.33642 6.39064 6.56600 6.71763 6.91099 7.00961 7.20942 7.40148 7.47613 7.67438 7.71746 7.90922 8.05913 8.08624 8.44046 9.08072 9.63869 11.13729 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.002299 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.418992 B =12178.257428 C =13046.265771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.164 3.836 3 C -0.161 4.161 4 N -0.396 5.396 5 N -0.257 5.257 6 C 0.071 3.929 7 C -0.200 4.200 8 C -0.022 4.022 9 C -0.178 4.178 10 C 0.200 3.800 11 N -0.673 5.673 12 C 0.483 3.517 13 O -0.531 6.531 14 C 0.080 3.920 15 H 0.103 0.897 16 N -0.805 5.805 17 C -0.097 4.097 18 C 0.032 3.968 19 C -0.524 4.524 20 H 0.052 0.948 21 C 0.058 3.942 22 N -0.892 5.892 23 Si 0.890 3.110 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.277 1.277 27 C -0.153 4.153 28 C 0.148 3.852 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.190 0.810 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.417 0.583 40 H 0.335 0.665 41 H 0.349 0.651 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.014 0.986 45 H 0.035 0.965 46 H 0.260 0.740 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.756 12.630 14.791 26.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.063 3.937 3 C -0.219 4.219 4 N -0.184 5.184 5 N -0.070 5.070 6 C -0.124 4.124 7 C -0.208 4.208 8 C -0.043 4.043 9 C -0.200 4.200 10 C 0.102 3.898 11 N -0.318 5.318 12 C 0.271 3.729 13 O -0.406 6.406 14 C -0.036 4.036 15 H 0.121 0.879 16 N -0.332 5.332 17 C -0.135 4.135 18 C -0.005 4.005 19 C -0.563 4.563 20 H 0.070 0.930 21 C -0.143 4.143 22 N -0.531 5.531 23 Si 0.718 3.282 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.178 4.178 28 C 0.031 3.969 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.207 0.793 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.254 0.746 40 H 0.146 0.854 41 H 0.163 0.837 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.032 0.968 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.226 13.855 13.841 26.753 hybrid contribution 1.195 -0.711 0.868 1.639 sum -17.031 13.144 14.708 26.060 Atomic orbital electron populations 1.22145 0.93559 1.02848 1.03262 1.21213 0.95159 0.93773 0.83592 1.22137 1.01997 0.94555 1.03173 1.48603 1.43181 1.22409 1.04219 1.76570 1.20848 1.22304 0.87320 1.23848 0.96270 0.92486 0.99844 1.18928 1.08327 1.01428 0.92135 1.20135 0.93390 0.91577 0.99229 1.20477 1.05223 1.03564 0.90691 1.17491 0.92044 0.92108 0.88154 1.43903 1.60617 1.12011 1.15288 1.23138 0.75410 0.90373 0.84027 1.90668 1.53462 1.15382 1.81073 1.21910 1.01101 0.95606 0.84943 0.87908 1.58993 1.15207 1.30124 1.28919 1.21700 0.89438 1.01078 1.01305 1.19012 0.95051 0.92562 0.93904 1.21229 0.97820 1.25822 1.11398 0.93013 1.24987 0.97850 0.96285 0.95163 1.69955 1.36831 1.31024 1.15331 0.86706 0.85409 0.78321 0.77814 1.20340 1.21324 1.20308 1.19787 1.01844 0.97626 0.98527 1.18619 0.93924 0.89287 0.95060 0.91218 0.90713 0.92180 0.88285 0.92013 0.90721 0.91260 0.79335 0.85047 0.85020 0.74614 0.85355 0.83665 0.92682 0.92683 0.96803 0.94637 0.92999 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.45 37.16 0.35 -0.91 16 2 C 0.16 1.58 3.70 -67.93 -0.25 1.33 16 3 C -0.16 -1.39 9.45 37.16 0.35 -1.03 16 4 N -0.40 -4.76 3.34 -52.24 -0.17 -4.93 16 5 N -0.26 -3.04 12.28 30.88 0.38 -2.66 16 6 C 0.07 0.71 12.05 -16.98 -0.20 0.51 16 7 C -0.20 -2.28 6.17 -106.92 -0.66 -2.94 16 8 C -0.02 -0.21 10.05 -39.58 -0.40 -0.61 16 9 C -0.18 -1.86 9.87 -39.79 -0.39 -2.26 16 10 C 0.20 2.51 6.27 -83.67 -0.52 1.99 16 11 N -0.67 -8.13 5.33 -9.84 -0.05 -8.19 16 12 C 0.48 7.06 6.79 -10.98 -0.07 6.99 16 13 O -0.53 -9.02 13.94 5.55 0.08 -8.95 16 14 C 0.08 1.24 3.15 -68.86 -0.22 1.03 16 15 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 16 N -0.80 -12.61 8.44 -5.65 -0.05 -12.65 16 17 C -0.10 -1.85 4.78 -26.73 -0.13 -1.98 16 18 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 19 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 20 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 23 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C -0.15 -2.07 8.44 -39.24 -0.33 -2.40 16 28 C 0.15 1.92 6.88 -84.17 -0.58 1.34 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.95 7.48 -51.93 -0.39 0.56 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.19 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 39 H 0.42 3.99 8.82 -40.82 -0.36 3.63 16 40 H 0.33 4.46 9.06 -39.29 -0.36 4.10 16 41 H 0.35 5.58 8.58 -39.29 -0.34 5.24 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.04 0.95 7.75 -51.93 -0.40 0.55 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.13 1.92 6.01 -52.49 -0.32 1.61 16 LS Contribution 393.32 15.07 5.93 5.93 Total: -1.00 -33.77 393.32 -8.98 -42.75 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -7.20 Total: 9.59 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -3.61 Total: -11.56 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.84 Total: -54.19 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.77 -8.98 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424117289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.705 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds