Wall clock time and date at job start Tue Mar 31 2020 15:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46847 * 2 1 4 4 N 1.46497 * 109.46929 * 119.99988 * 2 1 3 5 5 N 1.40013 * 125.95410 * 299.97380 * 4 2 1 6 6 C 1.30127 * 109.78704 * 180.02562 * 5 4 2 7 7 C 1.41622 * 108.67398 * 0.02562 * 6 5 4 8 8 C 1.40138 * 133.49067 * 180.28988 * 7 6 5 9 9 C 1.36254 * 119.93456 * 180.12376 * 8 7 6 10 10 C 1.39596 * 120.61927 * 359.53312 * 9 8 7 11 11 N 1.39912 * 119.77896 * 180.23820 * 10 9 8 12 12 C 1.34776 * 119.99479 * 213.61369 * 11 10 9 13 13 O 1.21289 * 120.00372 * 5.27351 * 12 11 10 14 14 C 1.50710 * 119.99390 * 185.27847 * 12 11 10 15 15 H 1.08992 * 109.46931 * 40.00046 * 14 12 11 16 16 N 1.46902 * 109.46947 * 159.99785 * 14 12 11 17 17 C 1.53000 * 109.46825 * 279.99679 * 14 12 11 18 18 C 1.53005 * 109.46626 * 175.00061 * 17 14 12 19 19 C 1.50699 * 109.46814 * 180.02562 * 18 17 14 20 20 H 1.08005 * 120.00315 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99815 * 180.02562 * 19 18 17 22 22 N 1.31507 * 120.00080 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99768 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47101 * 59.99916 * 23 21 19 25 25 H 1.48496 * 109.47209 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47440 * 300.00279 * 23 21 19 27 27 C 1.38232 * 120.44169 * 0.25251 * 10 9 8 28 28 C 1.37176 * 125.95158 * 119.98059 * 4 2 1 29 29 H 1.08998 * 109.47082 * 299.99592 * 1 2 3 30 30 H 1.08994 * 109.47265 * 60.00054 * 1 2 3 31 31 H 1.08997 * 109.46627 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47082 * 240.00408 * 2 1 3 33 33 H 1.08998 * 109.47039 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47509 * 300.00015 * 3 2 1 35 35 H 1.08999 * 109.47430 * 60.00112 * 3 2 1 36 36 H 1.07993 * 125.66498 * 180.02562 * 6 5 4 37 37 H 1.07998 * 120.03475 * 359.95055 * 8 7 6 38 38 H 1.08005 * 119.68900 * 179.76708 * 9 8 7 39 39 H 0.96995 * 119.99919 * 33.61285 * 11 10 9 40 40 H 1.00900 * 111.00150 * 296.04960 * 16 14 12 41 41 H 1.00908 * 110.99447 * 59.99772 * 16 14 12 42 42 H 1.08998 * 109.47386 * 295.00352 * 17 14 12 43 43 H 1.08996 * 109.46776 * 55.00560 * 17 14 12 44 44 H 1.08998 * 109.47476 * 300.00236 * 18 17 14 45 45 H 1.09000 * 109.47105 * 60.00211 * 18 17 14 46 46 H 0.96996 * 119.99756 * 179.97438 * 22 21 19 47 47 H 1.07999 * 120.16959 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7585 -0.3222 2.5217 6 6 2.3461 -1.1527 3.3330 7 6 3.0341 -2.1250 2.5667 8 6 3.8161 -3.2391 2.8999 9 6 4.3631 -4.0050 1.9146 10 6 4.1446 -3.6971 0.5707 11 7 4.7107 -4.4984 -0.4267 12 6 5.1106 -3.9456 -1.5890 13 8 5.0687 -2.7422 -1.7344 14 6 5.6097 -4.8229 -2.7082 15 1 4.9957 -5.7215 -2.7669 16 7 5.5278 -4.0900 -3.9787 17 6 7.0638 -5.2155 -2.4387 18 6 7.5313 -6.2051 -3.5078 19 6 8.9633 -6.5922 -3.2421 20 1 9.4876 -6.1739 -2.3956 21 6 9.6044 -7.4797 -4.0803 22 7 8.9664 -7.9879 -5.1118 23 14 11.3796 -7.9590 -3.7513 24 1 11.4812 -8.5929 -2.4121 25 1 11.8334 -8.9196 -4.7888 26 1 12.2354 -6.7460 -3.7908 27 6 3.3730 -2.6055 0.2188 28 6 2.8099 -1.8108 1.2126 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.3146 -1.1080 4.4116 37 1 3.9874 -3.4888 3.9366 38 1 4.9683 -4.8606 2.1759 39 1 4.8154 -5.4518 -0.2817 40 1 4.5696 -3.8755 -4.2112 41 1 6.0891 -3.2520 -3.9494 42 1 7.6919 -4.3252 -2.4681 43 1 7.1383 -5.6804 -1.4557 44 1 6.9031 -7.0954 -3.4785 45 1 7.4567 -5.7401 -4.4909 46 1 9.4176 -8.6119 -5.7017 47 1 3.2072 -2.3710 -0.8223 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424117289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:42 Heat of formation + Delta-G solvation = 18.218181 kcal Electronic energy + Delta-G solvation = -27540.482890 eV Core-core repulsion = 23722.993869 eV Total energy + Delta-G solvation = -3817.489021 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.54998 -41.42506 -38.60793 -36.90051 -36.57862 -35.18325 -34.81155 -32.66503 -31.94087 -30.20398 -29.93197 -28.29589 -28.07181 -25.81628 -24.22802 -23.96375 -22.97006 -22.20987 -21.22535 -20.68280 -19.14886 -18.56900 -18.23573 -17.74754 -17.18610 -16.93395 -16.47522 -16.28960 -16.05420 -15.77827 -15.68507 -15.30349 -15.07695 -14.86586 -14.49907 -14.26734 -14.17040 -13.85394 -13.55273 -13.43361 -13.33323 -13.29642 -13.02902 -12.76930 -12.55728 -12.46471 -12.39691 -12.29129 -12.26101 -11.74591 -11.66336 -11.61169 -11.27577 -11.18550 -11.07505 -10.94488 -10.47299 -9.69342 -9.12731 -8.86982 -8.12672 -6.22563 -0.15841 0.49842 1.28356 1.36441 1.43335 1.45436 1.53087 1.67247 1.99803 2.45651 2.80077 3.20652 3.36480 3.44940 3.59138 3.77167 3.88604 3.92080 4.00137 4.04888 4.07923 4.17348 4.23991 4.28778 4.46486 4.57387 4.58395 4.68377 4.70904 4.77604 4.81544 4.91563 4.93576 5.10737 5.12520 5.20608 5.24117 5.26840 5.41898 5.58446 5.58831 5.85932 5.89419 5.99934 6.02597 6.08360 6.31415 6.32567 6.49040 6.66135 6.96281 6.97592 7.45526 8.98228 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.002299 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.418992 B =12178.257428 C =13046.265771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.154 3.846 3 C -0.152 4.152 4 N -0.405 5.405 5 N -0.280 5.280 6 C 0.078 3.922 7 C -0.212 4.212 8 C -0.010 4.010 9 C -0.183 4.183 10 C 0.187 3.813 11 N -0.659 5.659 12 C 0.490 3.510 13 O -0.556 6.556 14 C 0.090 3.910 15 H 0.118 0.882 16 N -0.817 5.817 17 C -0.084 4.084 18 C 0.039 3.961 19 C -0.543 4.543 20 H 0.056 0.944 21 C 0.002 3.998 22 N -0.929 5.929 23 Si 0.957 3.043 24 H -0.265 1.265 25 H -0.285 1.285 26 H -0.272 1.272 27 C -0.173 4.173 28 C 0.123 3.877 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.229 0.771 37 H 0.171 0.829 38 H 0.157 0.843 39 H 0.430 0.570 40 H 0.347 0.653 41 H 0.346 0.654 42 H 0.042 0.958 43 H 0.072 0.928 44 H -0.003 1.003 45 H 0.005 0.995 46 H 0.262 0.738 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.651 12.447 17.298 27.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.053 3.947 3 C -0.210 4.210 4 N -0.193 5.193 5 N -0.093 5.093 6 C -0.117 4.117 7 C -0.220 4.220 8 C -0.031 4.031 9 C -0.204 4.204 10 C 0.089 3.911 11 N -0.305 5.305 12 C 0.277 3.723 13 O -0.434 6.434 14 C -0.026 4.026 15 H 0.136 0.864 16 N -0.346 5.346 17 C -0.122 4.122 18 C 0.002 3.998 19 C -0.582 4.582 20 H 0.074 0.926 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.783 3.217 24 H -0.190 1.190 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.198 4.198 28 C 0.007 3.993 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.245 0.755 37 H 0.188 0.812 38 H 0.175 0.825 39 H 0.269 0.731 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.015 0.985 45 H 0.024 0.976 46 H 0.070 0.930 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.146 13.664 16.373 28.001 hybrid contribution 1.113 -0.639 0.121 1.289 sum -17.033 13.025 16.494 27.052 Atomic orbital electron populations 1.22071 0.92154 1.02479 1.04095 1.21403 0.96290 0.93998 0.82976 1.22077 1.00679 0.94167 1.04103 1.48837 1.43264 1.22428 1.04788 1.76543 1.21942 1.23335 0.87454 1.24512 0.94621 0.91109 1.01413 1.19314 1.08776 1.02328 0.91574 1.20580 0.91440 0.90074 1.00992 1.20774 1.05499 1.04491 0.89604 1.17727 0.92213 0.92022 0.89110 1.43707 1.59657 1.12700 1.14438 1.22744 0.75473 0.89641 0.84403 1.90669 1.54776 1.16376 1.81551 1.21688 0.99100 0.96399 0.85428 0.86434 1.58982 1.16232 1.30089 1.29272 1.21427 0.91442 0.99105 1.00213 1.18825 0.93891 0.92872 0.94209 1.21711 0.99324 1.25684 1.11438 0.92570 1.25882 1.02401 0.96370 0.94941 1.70089 1.38733 1.31779 1.16369 0.85621 0.79919 0.78078 0.78127 1.18994 1.21079 1.19739 1.19728 1.03411 0.98807 0.97874 1.18881 0.94590 0.89896 0.95981 0.91684 0.88462 0.93092 0.89009 0.93879 0.88448 0.91585 0.75463 0.81168 0.82492 0.73076 0.83908 0.84017 0.93904 0.90938 0.98491 0.97634 0.92961 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.45 71.98 0.68 -1.65 16 2 C 0.15 3.05 3.70 44.99 0.17 3.22 16 3 C -0.15 -2.65 9.45 71.98 0.68 -1.97 16 4 N -0.40 -9.81 3.34 -319.20 -1.07 -10.87 16 5 N -0.28 -6.38 12.28 -56.22 -0.69 -7.07 16 6 C 0.08 1.41 12.05 85.78 1.03 2.45 16 7 C -0.21 -4.46 6.17 -21.36 -0.13 -4.60 16 8 C -0.01 -0.16 10.05 22.27 0.22 0.06 16 9 C -0.18 -3.35 9.87 22.14 0.22 -3.13 16 10 C 0.19 4.52 6.27 38.18 0.24 4.76 16 11 N -0.66 -15.24 5.33 -303.43 -1.62 -16.86 16 12 C 0.49 14.19 6.79 87.66 0.60 14.79 16 13 O -0.56 -19.24 13.94 -3.06 -0.04 -19.29 16 14 C 0.09 2.76 3.15 44.17 0.14 2.90 16 15 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 16 N -0.82 -26.01 8.44 -171.79 -1.45 -27.46 16 17 C -0.08 -3.17 4.78 30.60 0.15 -3.03 16 18 C 0.04 1.97 4.86 29.85 0.15 2.11 16 19 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 20 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 21 C 0.00 0.11 5.46 84.66 0.46 0.57 16 22 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 23 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 25 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 27 C -0.17 -4.77 8.44 22.49 0.19 -4.58 16 28 C 0.12 3.21 6.88 39.15 0.27 3.48 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 1.89 7.48 -2.39 -0.02 1.87 16 33 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.23 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 38 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.43 7.44 8.82 -92.71 -0.82 6.62 16 40 H 0.35 9.37 9.06 -89.69 -0.81 8.56 16 41 H 0.35 11.36 8.58 -89.69 -0.77 10.59 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.01 0.29 7.75 -2.39 -0.02 0.27 16 46 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 47 H 0.11 3.50 6.01 -2.91 -0.02 3.48 16 Total: -1.00 -74.48 393.32 1.34 -73.14 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -1.39 Total: 32.75 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 5.29 Total: -14.52 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -4.54 Total: -117.90 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.04 Total: -19.29 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -74.48 1.34 -73.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424117289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.355 kcal (2) G-P(sol) polarization free energy of solvation -74.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds