Wall clock time and date at job start Tue Mar 31 2020 15:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47251 * 2 1 4 4 N 1.46499 * 109.46772 * 239.99974 * 2 1 3 5 5 N 1.40019 * 125.95115 * 60.02281 * 4 2 1 6 6 C 1.30129 * 109.78336 * 179.97438 * 5 4 2 7 7 C 1.41625 * 108.67492 * 0.02562 * 6 5 4 8 8 C 1.40137 * 133.48766 * 180.02562 * 7 6 5 9 9 C 1.36257 * 119.93257 * 179.29878 * 8 7 6 10 10 C 1.39600 * 120.62089 * 0.56598 * 9 8 7 11 11 N 1.39903 * 119.78368 * 179.66481 * 10 9 8 12 12 C 1.34779 * 120.00061 * 213.56950 * 11 10 9 13 13 O 1.21289 * 119.99798 * 5.27186 * 12 11 10 14 14 C 1.50698 * 119.99919 * 185.28148 * 12 11 10 15 15 H 1.09004 * 109.46878 * 319.99456 * 14 12 11 16 16 N 1.46903 * 109.46862 * 199.99893 * 14 12 11 17 17 C 1.52995 * 109.47244 * 79.99619 * 14 12 11 18 18 C 1.53008 * 109.47021 * 184.99700 * 17 14 12 19 19 C 1.50696 * 109.46891 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00478 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99439 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00486 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47344 * 89.99815 * 23 21 19 25 25 H 1.48493 * 109.47448 * 210.00319 * 23 21 19 26 26 H 1.48510 * 109.46871 * 330.00119 * 23 21 19 27 27 C 1.38243 * 120.43640 * 359.63972 * 10 9 8 28 28 C 1.37170 * 125.95197 * 239.71540 * 4 2 1 29 29 H 1.09001 * 109.46668 * 299.99760 * 1 2 3 30 30 H 1.08992 * 109.47247 * 59.99434 * 1 2 3 31 31 H 1.08994 * 109.47518 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47046 * 120.00256 * 2 1 3 33 33 H 1.09000 * 109.47304 * 59.99990 * 3 2 1 34 34 H 1.09000 * 109.47167 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47305 * 300.00098 * 3 2 1 36 36 H 1.07996 * 125.65787 * 179.97438 * 6 5 4 37 37 H 1.07995 * 120.03720 * 359.93826 * 8 7 6 38 38 H 1.07997 * 119.69180 * 180.18662 * 9 8 7 39 39 H 0.97000 * 119.99873 * 33.56473 * 11 10 9 40 40 H 1.00900 * 111.00086 * 176.04566 * 16 14 12 41 41 H 1.00902 * 110.99482 * 299.99893 * 16 14 12 42 42 H 1.08993 * 109.47454 * 304.99715 * 17 14 12 43 43 H 1.09005 * 109.47256 * 65.00152 * 17 14 12 44 44 H 1.08993 * 109.47019 * 300.00282 * 18 17 14 45 45 H 1.09005 * 109.46737 * 60.00133 * 18 17 14 46 46 H 0.96993 * 120.00293 * 179.97438 * 22 21 19 47 47 H 1.07999 * 120.16067 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1962 5 7 1.7583 -0.3222 -2.5218 6 6 2.3459 -1.1528 -3.3331 7 6 3.0330 -2.1257 -2.5668 8 6 3.8192 -3.2368 -2.9001 9 6 4.3735 -3.9975 -1.9149 10 6 4.1569 -3.6884 -0.5709 11 7 4.7288 -4.4856 0.4265 12 6 4.0776 -4.6792 1.5905 13 8 2.9556 -4.2427 1.7375 14 6 4.7436 -5.4379 2.7093 15 1 5.2940 -6.2839 2.2974 16 7 3.7223 -5.9271 3.6451 17 6 5.7109 -4.5115 3.4487 18 6 6.4782 -5.3118 4.5032 19 6 7.4314 -4.3994 5.2310 20 1 7.4845 -3.3532 4.9682 21 6 8.2351 -4.9000 6.2332 22 7 8.1701 -6.1739 6.5537 23 14 9.4162 -3.7689 7.1360 24 1 8.7340 -3.1815 8.3169 25 1 10.6003 -4.5452 7.5837 26 1 9.8534 -2.6807 6.2248 27 6 3.3813 -2.5995 -0.2189 28 6 2.8146 -1.8074 -1.2127 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.3142 -1.1080 -4.4117 37 1 3.9940 -3.4840 -3.9367 38 1 4.9812 -4.8512 -2.1761 39 1 5.5941 -4.8989 0.2802 40 1 4.1373 -6.4936 4.3696 41 1 3.1980 -5.1611 4.0408 42 1 6.4148 -4.0789 2.7377 43 1 5.1497 -3.7138 3.9354 44 1 5.7743 -5.7444 5.2141 45 1 7.0394 -6.1095 4.0165 46 1 8.7357 -6.5262 7.2585 47 1 3.2169 -2.3642 0.8222 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424117290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:48 Heat of formation + Delta-G solvation = 39.847324 kcal Electronic energy + Delta-G solvation = -27683.958052 eV Core-core repulsion = 23867.406942 eV Total energy + Delta-G solvation = -3816.551111 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62832 -40.18032 -37.56906 -35.88730 -35.47231 -34.10764 -32.91769 -31.77530 -29.98163 -29.22293 -29.04048 -27.53494 -26.57714 -24.35365 -23.28942 -23.00032 -21.97221 -20.76014 -20.05642 -19.66580 -18.09283 -17.46453 -16.97045 -16.30643 -16.09311 -15.37444 -15.20842 -14.89571 -14.71002 -14.59489 -14.43574 -14.37942 -13.97841 -13.70258 -13.36555 -13.21823 -13.03189 -12.69541 -12.54604 -12.52612 -12.27142 -12.11147 -11.79510 -11.63015 -11.56453 -11.36290 -11.13966 -10.96939 -10.78893 -10.73097 -10.26428 -10.13311 -10.06290 -9.91341 -9.38842 -9.28612 -8.49262 -8.31567 -8.16782 -7.90785 -6.13646 -4.17104 0.79412 1.40846 2.20550 2.38401 2.78469 3.03336 3.23787 3.30840 3.33595 3.72578 4.19075 4.34903 4.44095 4.67836 4.68495 4.81446 4.82943 4.94225 5.02497 5.06470 5.15610 5.22670 5.28359 5.30591 5.38435 5.44876 5.46706 5.48703 5.59310 5.63054 5.80169 5.88749 5.98636 6.08541 6.18104 6.19375 6.30413 6.41674 6.45378 6.77945 6.78806 6.98657 7.27488 7.44082 7.48780 7.54359 7.56087 7.79857 7.83252 8.20072 8.25414 8.88791 9.48255 10.97214 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.002564 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.096602 B =10916.008265 C =11576.590635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 C -0.161 4.161 4 N -0.395 5.395 5 N -0.257 5.257 6 C 0.070 3.930 7 C -0.200 4.200 8 C -0.023 4.023 9 C -0.179 4.179 10 C 0.204 3.796 11 N -0.675 5.675 12 C 0.525 3.475 13 O -0.515 6.515 14 C 0.077 3.923 15 H 0.100 0.900 16 N -0.830 5.830 17 C -0.138 4.138 18 C 0.025 3.975 19 C -0.525 4.525 20 H 0.055 0.945 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.152 4.152 28 C 0.149 3.851 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.189 0.811 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.415 0.585 40 H 0.357 0.643 41 H 0.346 0.654 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.018 0.982 45 H 0.019 0.981 46 H 0.262 0.738 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 8.064 -18.678 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.062 3.938 3 C -0.219 4.219 4 N -0.183 5.183 5 N -0.071 5.071 6 C -0.126 4.126 7 C -0.209 4.209 8 C -0.044 4.044 9 C -0.200 4.200 10 C 0.106 3.894 11 N -0.321 5.321 12 C 0.313 3.687 13 O -0.388 6.388 14 C -0.039 4.039 15 H 0.118 0.882 16 N -0.363 5.363 17 C -0.178 4.178 18 C -0.012 4.012 19 C -0.564 4.564 20 H 0.073 0.927 21 C -0.143 4.143 22 N -0.531 5.531 23 Si 0.720 3.280 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 C -0.176 4.176 28 C 0.032 3.968 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.206 0.794 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.252 0.748 40 H 0.173 0.827 41 H 0.159 0.841 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.375 8.987 -18.738 24.187 hybrid contribution 2.234 0.147 1.222 2.550 sum -10.141 9.134 -17.517 22.206 Atomic orbital electron populations 1.22130 0.93505 1.03022 1.03129 1.21234 0.95367 0.93599 0.83628 1.22147 1.01835 0.94663 1.03212 1.48612 1.42672 1.22826 1.04200 1.76566 1.20620 1.22509 0.87360 1.23833 0.96420 0.92508 0.99798 1.18919 1.08316 1.01510 0.92132 1.20104 0.93394 0.91796 0.99123 1.20418 1.06198 1.02736 0.90664 1.17407 0.94766 0.89333 0.87941 1.43691 1.23314 1.49970 1.15128 1.21178 0.85584 0.79339 0.82567 1.90656 1.18311 1.49261 1.80565 1.21483 0.92508 0.97927 0.91952 0.88178 1.58742 1.26718 1.27034 1.23766 1.22405 0.97354 0.98513 0.99489 1.19101 0.94566 0.95175 0.92379 1.21163 1.21395 0.95468 1.18329 0.92704 1.25008 0.97199 0.95074 0.96977 1.69941 1.39836 1.12647 1.30719 0.86583 0.80607 0.80705 0.80070 1.20604 1.21108 1.19854 1.19853 1.03989 0.95065 0.98737 1.18623 0.93816 0.89326 0.95034 0.90717 0.91322 0.92015 0.88116 0.90692 0.92108 0.91277 0.79396 0.85128 0.85173 0.74815 0.82748 0.84093 0.92364 0.92593 0.96352 0.96224 0.92819 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.45 37.16 0.35 -1.14 16 2 C 0.16 1.74 3.70 -67.93 -0.25 1.48 16 3 C -0.16 -1.45 9.45 37.16 0.35 -1.10 16 4 N -0.39 -5.04 3.34 -52.24 -0.17 -5.21 16 5 N -0.26 -3.18 12.28 30.88 0.38 -2.80 16 6 C 0.07 0.73 12.05 -16.98 -0.20 0.52 16 7 C -0.20 -2.37 6.17 -106.92 -0.66 -3.03 16 8 C -0.02 -0.22 10.05 -39.58 -0.40 -0.62 16 9 C -0.18 -1.87 9.87 -39.79 -0.39 -2.26 16 10 C 0.20 2.66 6.28 -83.66 -0.53 2.13 16 11 N -0.68 -8.53 5.33 -9.84 -0.05 -8.58 16 12 C 0.53 8.16 6.80 -10.99 -0.07 8.09 16 13 O -0.51 -9.38 13.94 5.55 0.08 -9.30 16 14 C 0.08 1.21 3.21 -68.87 -0.22 0.99 16 15 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 16 N -0.83 -13.47 8.94 -5.65 -0.05 -13.52 16 17 C -0.14 -2.55 4.78 -26.73 -0.13 -2.68 16 18 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 19 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 20 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 23 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C -0.15 -2.19 8.44 -39.24 -0.33 -2.52 16 28 C 0.15 2.04 6.88 -84.17 -0.58 1.46 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 1.09 7.48 -51.93 -0.39 0.70 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.19 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.42 4.08 8.82 -40.82 -0.36 3.72 16 40 H 0.36 5.82 7.55 -39.29 -0.30 5.52 16 41 H 0.35 5.67 8.58 -39.29 -0.34 5.33 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.14 2.15 6.01 -52.49 -0.32 1.83 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -32.56 391.36 -8.91 -41.47 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -7.09 Total: 12.02 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -3.61 Total: -11.07 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.84 Total: -54.91 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.08 Total: -9.30 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.56 -8.91 -41.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424117290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.315 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds