Wall clock time and date at job start Tue Mar 31 2020 15:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47251 * 2 1 4 4 N 1.46499 * 109.46772 * 239.99974 * 2 1 3 5 5 N 1.40019 * 125.95115 * 60.02281 * 4 2 1 6 6 C 1.30129 * 109.78336 * 179.97438 * 5 4 2 7 7 C 1.41625 * 108.67492 * 0.02562 * 6 5 4 8 8 C 1.40137 * 133.48766 * 180.02562 * 7 6 5 9 9 C 1.36257 * 119.93257 * 179.29878 * 8 7 6 10 10 C 1.39600 * 120.62089 * 0.56598 * 9 8 7 11 11 N 1.39903 * 119.78368 * 179.66481 * 10 9 8 12 12 C 1.34779 * 120.00061 * 213.56950 * 11 10 9 13 13 O 1.21289 * 119.99798 * 5.27186 * 12 11 10 14 14 C 1.50698 * 119.99919 * 185.28148 * 12 11 10 15 15 H 1.09004 * 109.46878 * 319.99456 * 14 12 11 16 16 N 1.46903 * 109.46862 * 199.99893 * 14 12 11 17 17 C 1.52995 * 109.47244 * 79.99619 * 14 12 11 18 18 C 1.53008 * 109.47021 * 184.99700 * 17 14 12 19 19 C 1.50696 * 109.46891 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00478 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99439 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00486 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47344 * 89.99815 * 23 21 19 25 25 H 1.48493 * 109.47448 * 210.00319 * 23 21 19 26 26 H 1.48510 * 109.46871 * 330.00119 * 23 21 19 27 27 C 1.38243 * 120.43640 * 359.63972 * 10 9 8 28 28 C 1.37170 * 125.95197 * 239.71540 * 4 2 1 29 29 H 1.09001 * 109.46668 * 299.99760 * 1 2 3 30 30 H 1.08992 * 109.47247 * 59.99434 * 1 2 3 31 31 H 1.08994 * 109.47518 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47046 * 120.00256 * 2 1 3 33 33 H 1.09000 * 109.47304 * 59.99990 * 3 2 1 34 34 H 1.09000 * 109.47167 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47305 * 300.00098 * 3 2 1 36 36 H 1.07996 * 125.65787 * 179.97438 * 6 5 4 37 37 H 1.07995 * 120.03720 * 359.93826 * 8 7 6 38 38 H 1.07997 * 119.69180 * 180.18662 * 9 8 7 39 39 H 0.97000 * 119.99873 * 33.56473 * 11 10 9 40 40 H 1.00900 * 111.00086 * 176.04566 * 16 14 12 41 41 H 1.00902 * 110.99482 * 299.99893 * 16 14 12 42 42 H 1.08993 * 109.47454 * 304.99715 * 17 14 12 43 43 H 1.09005 * 109.47256 * 65.00152 * 17 14 12 44 44 H 1.08993 * 109.47019 * 300.00282 * 18 17 14 45 45 H 1.09005 * 109.46737 * 60.00133 * 18 17 14 46 46 H 0.96993 * 120.00293 * 179.97438 * 22 21 19 47 47 H 1.07999 * 120.16067 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1962 5 7 1.7583 -0.3222 -2.5218 6 6 2.3459 -1.1528 -3.3331 7 6 3.0330 -2.1257 -2.5668 8 6 3.8192 -3.2368 -2.9001 9 6 4.3735 -3.9975 -1.9149 10 6 4.1569 -3.6884 -0.5709 11 7 4.7288 -4.4856 0.4265 12 6 4.0776 -4.6792 1.5905 13 8 2.9556 -4.2427 1.7375 14 6 4.7436 -5.4379 2.7093 15 1 5.2940 -6.2839 2.2974 16 7 3.7223 -5.9271 3.6451 17 6 5.7109 -4.5115 3.4487 18 6 6.4782 -5.3118 4.5032 19 6 7.4314 -4.3994 5.2310 20 1 7.4845 -3.3532 4.9682 21 6 8.2351 -4.9000 6.2332 22 7 8.1701 -6.1739 6.5537 23 14 9.4162 -3.7689 7.1360 24 1 8.7340 -3.1815 8.3169 25 1 10.6003 -4.5452 7.5837 26 1 9.8534 -2.6807 6.2248 27 6 3.3813 -2.5995 -0.2189 28 6 2.8146 -1.8074 -1.2127 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.3142 -1.1080 -4.4117 37 1 3.9940 -3.4840 -3.9367 38 1 4.9812 -4.8512 -2.1761 39 1 5.5941 -4.8989 0.2802 40 1 4.1373 -6.4936 4.3696 41 1 3.1980 -5.1611 4.0408 42 1 6.4148 -4.0789 2.7377 43 1 5.1497 -3.7138 3.9354 44 1 5.7743 -5.7444 5.2141 45 1 7.0394 -6.1095 4.0165 46 1 8.7357 -6.5262 7.2585 47 1 3.2169 -2.3642 0.8222 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424117290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:47 Heat of formation + Delta-G solvation = 18.264682 kcal Electronic energy + Delta-G solvation = -27684.893946 eV Core-core repulsion = 23867.406942 eV Total energy + Delta-G solvation = -3817.487004 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.51944 -41.34438 -38.57842 -37.11756 -36.58564 -35.14772 -34.84537 -32.64291 -31.70912 -30.22556 -29.91049 -28.28921 -28.10867 -25.95494 -24.23462 -23.97727 -22.99524 -22.26253 -21.22260 -20.62001 -19.14593 -18.76213 -18.20295 -17.85185 -17.10026 -16.56097 -16.29822 -16.19288 -15.94827 -15.79889 -15.70731 -15.43654 -14.94241 -14.83010 -14.72879 -14.28469 -14.17077 -14.05269 -13.56392 -13.46031 -13.31902 -13.27896 -13.02132 -12.95105 -12.72019 -12.53116 -12.45499 -12.38109 -12.20286 -11.82327 -11.72892 -11.64294 -11.31546 -11.17846 -11.05404 -10.73872 -10.56754 -9.69554 -9.09475 -8.84272 -8.22465 -6.32502 -0.12497 0.53058 1.33758 1.38864 1.39261 1.40475 1.50101 1.72730 1.95623 2.39080 2.83089 3.11538 3.38262 3.50947 3.70556 3.74084 3.89590 3.94056 4.01770 4.07290 4.08522 4.18414 4.20974 4.27292 4.49352 4.58701 4.59320 4.63686 4.70213 4.71351 4.79908 4.83557 4.94625 5.06656 5.11730 5.13217 5.23819 5.28455 5.44312 5.45994 5.61528 5.64941 5.80030 5.92771 6.01790 6.08589 6.20359 6.38432 6.44469 6.68818 6.83082 7.05700 7.36734 8.88209 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.002564 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.096602 B =10916.008265 C =11576.590635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.154 3.846 3 C -0.151 4.151 4 N -0.406 5.406 5 N -0.280 5.280 6 C 0.079 3.921 7 C -0.211 4.211 8 C -0.009 4.009 9 C -0.180 4.180 10 C 0.191 3.809 11 N -0.661 5.661 12 C 0.527 3.473 13 O -0.545 6.545 14 C 0.085 3.915 15 H 0.118 0.882 16 N -0.830 5.830 17 C -0.121 4.121 18 C 0.031 3.969 19 C -0.545 4.545 20 H 0.054 0.946 21 C 0.007 3.993 22 N -0.926 5.926 23 Si 0.956 3.044 24 H -0.276 1.276 25 H -0.281 1.281 26 H -0.266 1.266 27 C -0.177 4.177 28 C 0.123 3.877 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.231 0.769 37 H 0.174 0.826 38 H 0.162 0.838 39 H 0.430 0.570 40 H 0.355 0.645 41 H 0.344 0.656 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.003 0.997 45 H 0.005 0.995 46 H 0.264 0.736 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.889 8.499 -20.951 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.053 3.947 3 C -0.209 4.209 4 N -0.194 5.194 5 N -0.093 5.093 6 C -0.116 4.116 7 C -0.219 4.219 8 C -0.030 4.030 9 C -0.201 4.201 10 C 0.093 3.907 11 N -0.307 5.307 12 C 0.315 3.685 13 O -0.421 6.421 14 C -0.030 4.030 15 H 0.136 0.864 16 N -0.362 5.362 17 C -0.161 4.161 18 C -0.007 4.007 19 C -0.583 4.583 20 H 0.072 0.928 21 C -0.192 4.192 22 N -0.566 5.566 23 Si 0.782 3.218 24 H -0.202 1.202 25 H -0.206 1.206 26 H -0.190 1.190 27 C -0.202 4.202 28 C 0.006 3.994 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.247 0.753 37 H 0.191 0.809 38 H 0.180 0.820 39 H 0.269 0.731 40 H 0.171 0.829 41 H 0.157 0.843 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.073 0.927 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.735 9.431 -21.036 25.868 hybrid contribution 2.024 0.005 1.861 2.750 sum -9.711 9.437 -19.175 23.474 Atomic orbital electron populations 1.22062 0.92552 1.02163 1.04087 1.21384 0.96156 0.94194 0.83007 1.22073 1.00941 0.93749 1.04096 1.48818 1.42887 1.22911 1.04779 1.76539 1.21802 1.23626 0.87374 1.24529 0.94603 0.91030 1.01414 1.19319 1.08774 1.02492 0.91348 1.20598 0.91231 0.90071 1.01065 1.20759 1.06359 1.03724 0.89239 1.17685 0.94862 0.89029 0.89102 1.43496 1.23607 1.49372 1.14247 1.21008 0.85261 0.78954 0.83229 1.90655 1.19755 1.50427 1.81279 1.21400 0.91919 0.97859 0.91866 0.86411 1.58761 1.26694 1.26915 1.23798 1.22141 0.97456 0.97944 0.98539 1.18964 0.93990 0.94744 0.92958 1.21617 1.22017 0.95949 1.18749 0.92816 1.25831 0.98957 0.96475 0.97912 1.70047 1.40849 1.14246 1.31417 0.85577 0.78479 0.78931 0.78860 1.20183 1.20645 1.19038 1.19763 1.05927 0.96750 0.97795 1.18888 0.94529 0.89935 0.96066 0.88587 0.91427 0.93696 0.89346 0.88616 0.93321 0.91462 0.75308 0.80879 0.82038 0.73096 0.82926 0.84319 0.91459 0.93757 0.97826 0.97615 0.92706 0.87280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.45 71.98 0.68 -2.19 16 2 C 0.15 3.42 3.70 44.99 0.17 3.59 16 3 C -0.15 -2.75 9.45 71.98 0.68 -2.07 16 4 N -0.41 -10.56 3.34 -319.21 -1.07 -11.62 16 5 N -0.28 -6.70 12.28 -56.21 -0.69 -7.40 16 6 C 0.08 1.47 12.05 85.78 1.03 2.51 16 7 C -0.21 -4.59 6.17 -21.35 -0.13 -4.72 16 8 C -0.01 -0.14 10.05 22.27 0.22 0.08 16 9 C -0.18 -3.25 9.87 22.14 0.22 -3.04 16 10 C 0.19 4.83 6.28 38.18 0.24 5.07 16 11 N -0.66 -16.11 5.33 -303.44 -1.62 -17.73 16 12 C 0.53 16.39 6.80 87.66 0.60 16.99 16 13 O -0.55 -20.46 13.94 -3.06 -0.04 -20.50 16 14 C 0.08 2.66 3.21 44.17 0.14 2.81 16 15 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 16 N -0.83 -27.24 8.94 -171.80 -1.54 -28.77 16 17 C -0.12 -4.49 4.78 30.60 0.15 -4.35 16 18 C 0.03 1.45 4.74 29.85 0.14 1.59 16 19 C -0.55 -29.35 9.11 25.60 0.23 -29.12 16 20 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 21 C 0.01 0.38 5.46 84.65 0.46 0.84 16 22 N -0.93 -53.41 13.29 21.45 0.28 -53.13 16 23 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 C -0.18 -5.29 8.44 22.49 0.19 -5.10 16 28 C 0.12 3.39 6.88 39.16 0.27 3.66 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 2.12 7.48 -2.38 -0.02 2.10 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.23 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.43 7.66 8.82 -92.71 -0.82 6.84 16 40 H 0.36 11.80 7.55 -89.69 -0.68 11.12 16 41 H 0.34 11.58 8.58 -89.69 -0.77 10.81 16 42 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 44 H 0.00 0.17 6.87 -2.39 -0.02 0.16 16 45 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 46 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 47 H 0.11 3.75 6.01 -2.91 -0.02 3.73 16 Total: -1.00 -71.97 391.36 1.40 -70.58 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: -1.25 Total: 37.18 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 5.29 Total: -13.45 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -4.62 Total: -118.64 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.04 Total: -20.50 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -71.97 1.40 -70.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424117290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.842 kcal (2) G-P(sol) polarization free energy of solvation -71.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds