Wall clock time and date at job start Tue Mar 31 2020 15:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47046 * 2 1 4 4 N 1.46498 * 109.47479 * 120.00462 * 2 1 3 5 5 C 1.34093 * 125.03308 * 275.02587 * 4 2 1 6 6 C 1.38236 * 107.89609 * 179.97438 * 5 4 2 7 7 C 1.41144 * 134.73441 * 180.29728 * 6 5 4 8 8 C 1.36221 * 119.48473 * 180.19680 * 7 6 5 9 9 N 1.40080 * 119.21374 * 179.73743 * 8 7 6 10 10 C 1.34777 * 119.99812 * 144.41958 * 9 8 7 11 11 O 1.21301 * 120.00065 * 4.17521 * 10 9 8 12 12 C 1.50699 * 120.00108 * 184.18783 * 10 9 8 13 13 H 1.08995 * 109.46915 * 39.98891 * 12 10 9 14 14 N 1.46893 * 109.47453 * 159.99740 * 12 10 9 15 15 C 1.53004 * 109.46579 * 279.99510 * 12 10 9 16 16 C 1.52999 * 109.47037 * 174.99981 * 15 12 10 17 17 C 1.50699 * 109.47192 * 179.97438 * 16 15 12 18 18 H 1.07995 * 119.99877 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99988 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00186 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00048 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47199 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47170 * 120.00229 * 21 19 17 24 24 H 1.48504 * 109.47288 * 239.99980 * 21 19 17 25 25 C 1.40217 * 121.56751 * 359.46149 * 8 7 6 26 26 C 1.35528 * 121.76200 * 0.27581 * 25 8 7 27 27 C 1.41185 * 119.69667 * 359.97438 * 26 25 8 28 28 N 1.32115 * 134.57333 * 179.97438 * 27 26 25 29 29 H 1.09003 * 109.46982 * 299.99380 * 1 2 3 30 30 H 1.08995 * 109.47487 * 59.99567 * 1 2 3 31 31 H 1.09004 * 109.46815 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46982 * 240.00619 * 2 1 3 33 33 H 1.08999 * 109.47016 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47331 * 300.00528 * 3 2 1 35 35 H 1.09003 * 109.46724 * 60.00462 * 3 2 1 36 36 H 1.08003 * 126.04540 * 0.03348 * 5 4 2 37 37 H 1.08006 * 120.25987 * 359.95224 * 7 6 5 38 38 H 0.96998 * 120.00267 * 324.13519 * 9 8 7 39 39 H 1.00899 * 110.99718 * 296.04079 * 14 12 10 40 40 H 1.00900 * 111.00179 * 59.98993 * 14 12 10 41 41 H 1.08998 * 109.47036 * 294.99698 * 15 12 10 42 42 H 1.09002 * 109.47095 * 55.00001 * 15 12 10 43 43 H 1.09004 * 109.46912 * 300.00179 * 16 15 12 44 44 H 1.09006 * 109.47149 * 59.99540 * 16 15 12 45 45 H 0.96996 * 120.00247 * 180.02562 * 20 19 17 46 46 H 1.07993 * 119.11948 * 180.29804 * 25 8 7 47 47 H 1.08001 * 120.15187 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1844 -0.1224 2.3993 6 6 2.6579 -1.0908 3.2647 7 6 3.0127 -1.1147 4.6306 8 6 3.4615 -2.2745 5.1866 9 7 3.8174 -2.2904 6.5413 10 6 3.5749 -3.3852 7.2889 11 8 3.1185 -4.3834 6.7725 12 6 3.8706 -3.3693 8.7665 13 1 3.5828 -2.4046 9.1843 14 7 3.1100 -4.4368 9.4297 15 6 5.3673 -3.5955 8.9895 16 6 5.6879 -3.4556 10.4790 17 6 7.1620 -3.6789 10.6987 18 1 7.8058 -3.8983 9.8598 19 6 7.6888 -3.6022 11.9705 20 7 6.9049 -3.3346 12.9920 21 14 9.5158 -3.8798 12.2429 22 1 10.1730 -4.1628 10.9417 23 1 10.1168 -2.6631 12.8462 24 1 9.7103 -5.0335 13.1575 25 6 3.5703 -3.4541 4.4365 26 6 3.2402 -3.4971 3.1227 27 6 2.7725 -2.3300 2.4804 28 7 2.3797 -2.0415 1.2525 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 1.9827 0.9090 2.6482 37 1 2.9329 -0.2194 5.2294 38 1 4.2420 -1.5149 6.9404 39 1 2.1171 -4.2751 9.3519 40 1 3.3591 -5.3418 9.0596 41 1 5.6378 -4.5960 8.6520 42 1 5.9347 -2.8557 8.4247 43 1 5.4173 -2.4550 10.8164 44 1 5.1205 -4.1953 11.0438 45 1 7.2756 -3.2803 13.8867 46 1 3.9262 -4.3525 4.9186 47 1 3.3337 -4.4202 2.5698 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424122918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:43 Heat of formation + Delta-G solvation = 50.590412 kcal Electronic energy + Delta-G solvation = -26931.056559 eV Core-core repulsion = 23114.971304 eV Total energy + Delta-G solvation = -3816.085256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.57481 -40.27002 -37.84381 -35.89441 -35.14658 -33.83309 -32.80108 -31.89613 -30.12070 -29.82852 -28.68476 -27.89615 -26.38993 -24.76190 -23.70902 -22.25220 -21.45777 -20.72816 -20.28210 -19.77429 -17.99478 -17.58483 -16.97996 -16.47638 -16.19120 -15.74717 -15.46549 -14.94655 -14.86218 -14.65004 -14.33466 -14.10648 -14.05358 -13.64863 -13.50770 -13.44584 -13.12380 -12.94953 -12.76458 -12.33141 -12.29715 -12.05490 -11.89180 -11.81856 -11.58937 -11.47343 -10.91293 -10.69912 -10.57163 -10.53798 -10.46340 -10.08747 -9.82542 -9.66332 -9.38120 -8.99053 -8.59300 -8.38981 -8.23331 -7.45012 -5.94096 -3.96160 0.46069 1.66933 2.00360 2.23156 2.74075 3.15621 3.34136 3.41916 3.45857 3.78825 3.83604 4.19451 4.21041 4.40305 4.47999 4.50037 4.76673 4.80373 4.81968 4.95949 5.01228 5.04340 5.10386 5.18636 5.23877 5.36283 5.41465 5.43592 5.49480 5.50144 5.54625 5.78889 5.92641 6.13545 6.29230 6.36069 6.40824 6.49118 6.61819 6.63282 6.92882 7.07056 7.33216 7.47815 7.52908 7.75626 7.77718 7.95489 8.12403 8.21849 8.47996 9.12091 9.67194 11.16775 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023368 B = 0.001948 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.947369 B =14373.594555 C =14785.801260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.145 3.855 3 C -0.167 4.167 4 N -0.318 5.318 5 C 0.067 3.933 6 C -0.185 4.185 7 C -0.089 4.089 8 C 0.126 3.874 9 N -0.674 5.674 10 C 0.484 3.516 11 O -0.536 6.536 12 C 0.080 3.920 13 H 0.101 0.899 14 N -0.806 5.806 15 C -0.097 4.097 16 C 0.031 3.969 17 C -0.522 4.522 18 H 0.053 0.947 19 C 0.057 3.943 20 N -0.892 5.892 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.069 4.069 26 C -0.094 4.094 27 C 0.095 3.905 28 N -0.308 5.308 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.180 0.820 37 H 0.126 0.874 38 H 0.413 0.587 39 H 0.335 0.665 40 H 0.349 0.651 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.013 0.987 44 H 0.036 0.964 45 H 0.259 0.741 46 H 0.145 0.855 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.473 11.311 -25.833 31.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 C -0.225 4.225 4 N -0.094 5.094 5 C -0.088 4.088 6 C -0.195 4.195 7 C -0.113 4.113 8 C 0.031 3.969 9 N -0.319 5.319 10 C 0.271 3.729 11 O -0.412 6.412 12 C -0.036 4.036 13 H 0.119 0.881 14 N -0.333 5.333 15 C -0.135 4.135 16 C -0.007 4.007 17 C -0.560 4.560 18 H 0.071 0.929 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.092 4.092 26 C -0.116 4.116 27 C -0.058 4.058 28 N -0.135 5.135 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.197 0.803 37 H 0.144 0.856 38 H 0.249 0.751 39 H 0.147 0.853 40 H 0.163 0.837 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.162 0.838 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.688 10.411 -26.617 31.689 hybrid contribution 0.912 0.527 0.198 1.071 sum -12.777 10.937 -26.418 31.318 Atomic orbital electron populations 1.22245 0.92983 1.03689 1.03390 1.21471 0.95298 0.92991 0.85859 1.22239 1.02612 0.93597 1.04013 1.48789 1.44813 1.07540 1.08272 1.22402 1.01863 0.99028 0.85489 1.19226 1.11885 0.93322 0.95078 1.19826 1.00868 0.97787 0.92780 1.17202 1.01083 0.94525 0.84126 1.43814 1.60974 1.19133 1.08015 1.23022 0.75905 0.82110 0.91856 1.90640 1.44305 1.32263 1.74025 1.21875 0.98984 0.97971 0.84752 0.88117 1.58998 1.09355 1.05025 1.59965 1.21693 0.88187 1.00905 1.02735 1.19027 0.95944 0.97763 0.87923 1.21315 0.93910 1.47937 0.92862 0.92890 1.24993 0.97619 0.95479 0.96277 1.69982 1.34746 1.49360 0.99069 0.86597 0.85863 0.77727 0.78145 1.19846 1.21133 1.21059 1.20899 0.97447 0.98186 0.92674 1.19782 1.02605 0.95393 0.93813 1.20976 0.98888 0.95061 0.90893 1.77681 1.25824 0.91317 1.18683 0.91656 0.90102 0.91349 0.87431 0.91184 0.89617 0.91242 0.80267 0.85580 0.75101 0.85326 0.83713 0.92673 0.92714 0.96820 0.94603 0.93159 0.83753 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 9.52 37.16 0.35 -0.38 16 2 C 0.15 0.80 3.88 -67.93 -0.26 0.54 16 3 C -0.17 -0.51 8.81 37.16 0.33 -0.18 16 4 N -0.32 -3.01 3.47 -54.30 -0.19 -3.20 16 5 C 0.07 0.60 10.61 -16.56 -0.18 0.42 16 6 C -0.18 -2.19 6.33 -105.20 -0.67 -2.85 16 7 C -0.09 -1.02 9.96 -39.21 -0.39 -1.41 16 8 C 0.13 1.67 6.23 -84.07 -0.52 1.14 16 9 N -0.67 -8.57 5.31 -10.11 -0.05 -8.62 16 10 C 0.48 7.35 6.89 -10.99 -0.08 7.28 16 11 O -0.54 -9.38 13.63 5.54 0.08 -9.31 16 12 C 0.08 1.28 3.15 -68.87 -0.22 1.07 16 13 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 14 N -0.81 -13.14 8.44 -5.66 -0.05 -13.18 16 15 C -0.10 -1.89 4.78 -26.73 -0.13 -2.01 16 16 C 0.03 0.76 4.86 -27.88 -0.14 0.63 16 17 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 21 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.07 -0.97 8.53 -39.81 -0.34 -1.31 16 26 C -0.09 -1.27 10.07 -39.43 -0.40 -1.67 16 27 C 0.10 1.30 7.49 -83.03 -0.62 0.68 16 28 N -0.31 -4.04 12.54 33.26 0.42 -3.62 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.07 0.16 7.05 -51.93 -0.37 -0.20 16 36 H 0.18 0.89 7.14 -52.48 -0.37 0.51 16 37 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.41 4.24 8.81 -40.82 -0.36 3.88 16 39 H 0.33 4.75 9.06 -39.29 -0.36 4.40 16 40 H 0.35 5.75 8.58 -39.29 -0.34 5.41 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.14 2.22 6.14 -52.49 -0.32 1.90 16 47 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -35.02 391.33 -8.98 -44.00 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.13 Total: 8.81 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -3.66 Total: -11.43 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.86 Total: -54.60 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.02 -8.98 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424122918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.588 kcal (2) G-P(sol) polarization free energy of solvation -35.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds