Wall clock time and date at job start Tue Mar 31 2020 15:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47046 * 2 1 4 4 N 1.46498 * 109.47479 * 120.00462 * 2 1 3 5 5 C 1.34093 * 125.03308 * 275.02587 * 4 2 1 6 6 C 1.38236 * 107.89609 * 179.97438 * 5 4 2 7 7 C 1.41144 * 134.73441 * 180.29728 * 6 5 4 8 8 C 1.36221 * 119.48473 * 180.19680 * 7 6 5 9 9 N 1.40080 * 119.21374 * 179.73743 * 8 7 6 10 10 C 1.34777 * 119.99812 * 144.41958 * 9 8 7 11 11 O 1.21301 * 120.00065 * 4.17521 * 10 9 8 12 12 C 1.50699 * 120.00108 * 184.18783 * 10 9 8 13 13 H 1.08995 * 109.46915 * 39.98891 * 12 10 9 14 14 N 1.46893 * 109.47453 * 159.99740 * 12 10 9 15 15 C 1.53004 * 109.46579 * 279.99510 * 12 10 9 16 16 C 1.52999 * 109.47037 * 174.99981 * 15 12 10 17 17 C 1.50699 * 109.47192 * 179.97438 * 16 15 12 18 18 H 1.07995 * 119.99877 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99988 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00186 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00048 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47199 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47170 * 120.00229 * 21 19 17 24 24 H 1.48504 * 109.47288 * 239.99980 * 21 19 17 25 25 C 1.40217 * 121.56751 * 359.46149 * 8 7 6 26 26 C 1.35528 * 121.76200 * 0.27581 * 25 8 7 27 27 C 1.41185 * 119.69667 * 359.97438 * 26 25 8 28 28 N 1.32115 * 134.57333 * 179.97438 * 27 26 25 29 29 H 1.09003 * 109.46982 * 299.99380 * 1 2 3 30 30 H 1.08995 * 109.47487 * 59.99567 * 1 2 3 31 31 H 1.09004 * 109.46815 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46982 * 240.00619 * 2 1 3 33 33 H 1.08999 * 109.47016 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47331 * 300.00528 * 3 2 1 35 35 H 1.09003 * 109.46724 * 60.00462 * 3 2 1 36 36 H 1.08003 * 126.04540 * 0.03348 * 5 4 2 37 37 H 1.08006 * 120.25987 * 359.95224 * 7 6 5 38 38 H 0.96998 * 120.00267 * 324.13519 * 9 8 7 39 39 H 1.00899 * 110.99718 * 296.04079 * 14 12 10 40 40 H 1.00900 * 111.00179 * 59.98993 * 14 12 10 41 41 H 1.08998 * 109.47036 * 294.99698 * 15 12 10 42 42 H 1.09002 * 109.47095 * 55.00001 * 15 12 10 43 43 H 1.09004 * 109.46912 * 300.00179 * 16 15 12 44 44 H 1.09006 * 109.47149 * 59.99540 * 16 15 12 45 45 H 0.96996 * 120.00247 * 180.02562 * 20 19 17 46 46 H 1.07993 * 119.11948 * 180.29804 * 25 8 7 47 47 H 1.08001 * 120.15187 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1844 -0.1224 2.3993 6 6 2.6579 -1.0908 3.2647 7 6 3.0127 -1.1147 4.6306 8 6 3.4615 -2.2745 5.1866 9 7 3.8174 -2.2904 6.5413 10 6 3.5749 -3.3852 7.2889 11 8 3.1185 -4.3834 6.7725 12 6 3.8706 -3.3693 8.7665 13 1 3.5828 -2.4046 9.1843 14 7 3.1100 -4.4368 9.4297 15 6 5.3673 -3.5955 8.9895 16 6 5.6879 -3.4556 10.4790 17 6 7.1620 -3.6789 10.6987 18 1 7.8058 -3.8983 9.8598 19 6 7.6888 -3.6022 11.9705 20 7 6.9049 -3.3346 12.9920 21 14 9.5158 -3.8798 12.2429 22 1 10.1730 -4.1628 10.9417 23 1 10.1168 -2.6631 12.8462 24 1 9.7103 -5.0335 13.1575 25 6 3.5703 -3.4541 4.4365 26 6 3.2402 -3.4971 3.1227 27 6 2.7725 -2.3300 2.4804 28 7 2.3797 -2.0415 1.2525 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 1.9827 0.9090 2.6482 37 1 2.9329 -0.2194 5.2294 38 1 4.2420 -1.5149 6.9404 39 1 2.1171 -4.2751 9.3519 40 1 3.3591 -5.3418 9.0596 41 1 5.6378 -4.5960 8.6520 42 1 5.9347 -2.8557 8.4247 43 1 5.4173 -2.4550 10.8164 44 1 5.1205 -4.1953 11.0438 45 1 7.2756 -3.2803 13.8867 46 1 3.9262 -4.3525 4.9186 47 1 3.3337 -4.4202 2.5698 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424122918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:42 Heat of formation + Delta-G solvation = 26.237745 kcal Electronic energy + Delta-G solvation = -26932.112570 eV Core-core repulsion = 23114.971304 eV Total energy + Delta-G solvation = -3817.141266 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.40937 -41.38967 -38.77486 -36.87155 -36.41119 -34.86087 -34.66866 -32.79463 -31.90150 -30.61487 -29.62497 -28.25880 -27.93081 -25.89870 -25.05663 -23.31981 -22.36092 -22.15191 -21.14262 -20.91990 -18.93299 -18.81226 -18.13318 -17.75227 -17.50319 -16.79128 -16.49112 -16.40892 -15.98534 -15.70654 -15.39344 -15.20641 -14.97605 -14.83550 -14.32814 -14.24757 -14.16345 -14.01081 -13.78963 -13.42334 -13.25942 -13.18391 -12.96941 -12.81101 -12.68397 -12.47150 -12.32419 -12.20086 -12.06284 -11.71151 -11.63871 -11.43933 -11.32585 -11.18851 -10.93052 -10.64191 -10.46777 -9.64004 -9.51060 -8.36850 -8.11788 -6.21405 -0.38945 0.66358 1.36472 1.37226 1.42543 1.43901 1.55841 1.59984 2.09407 2.46301 2.82837 3.18362 3.21383 3.55247 3.61635 3.77206 3.79435 3.87655 4.04153 4.07257 4.13603 4.28008 4.32856 4.34037 4.42357 4.53728 4.63022 4.71531 4.78815 4.81495 4.83323 4.96758 5.05771 5.11980 5.17177 5.22546 5.28877 5.33544 5.44783 5.50395 5.60704 5.88217 5.91456 5.99346 6.02152 6.12159 6.33426 6.44157 6.54956 6.61938 6.97788 7.11905 7.46547 8.99393 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023368 B = 0.001948 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.947369 B =14373.594555 C =14785.801260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 C -0.161 4.161 4 N -0.311 5.311 5 C 0.097 3.903 6 C -0.215 4.215 7 C -0.059 4.059 8 C 0.090 3.910 9 N -0.657 5.657 10 C 0.489 3.511 11 O -0.563 6.563 12 C 0.090 3.910 13 H 0.117 0.883 14 N -0.818 5.818 15 C -0.084 4.084 16 C 0.038 3.962 17 C -0.542 4.542 18 H 0.055 0.945 19 C 0.002 3.998 20 N -0.929 5.929 21 Si 0.958 3.042 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.282 1.282 25 C -0.077 4.077 26 C -0.111 4.111 27 C 0.074 3.926 28 N -0.349 5.349 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.043 0.957 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.229 0.771 37 H 0.161 0.839 38 H 0.425 0.575 39 H 0.347 0.653 40 H 0.346 0.654 41 H 0.042 0.958 42 H 0.069 0.931 43 H -0.003 1.003 44 H 0.006 0.994 45 H 0.261 0.739 46 H 0.124 0.876 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 14.530 -27.345 33.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 C -0.218 4.218 4 N -0.086 5.086 5 C -0.060 4.060 6 C -0.225 4.225 7 C -0.082 4.082 8 C -0.005 4.005 9 N -0.303 5.303 10 C 0.276 3.724 11 O -0.441 6.441 12 C -0.026 4.026 13 H 0.135 0.865 14 N -0.347 5.347 15 C -0.122 4.122 16 C 0.001 3.999 17 C -0.580 4.580 18 H 0.073 0.927 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.783 3.217 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.208 1.208 25 C -0.101 4.101 26 C -0.133 4.133 27 C -0.079 4.079 28 N -0.177 5.177 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.245 0.755 37 H 0.178 0.822 38 H 0.264 0.736 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.016 0.984 44 H 0.025 0.975 45 H 0.070 0.930 46 H 0.142 0.858 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.947 13.654 -28.177 34.276 hybrid contribution 0.886 -0.338 0.499 1.071 sum -13.061 13.316 -27.678 33.376 Atomic orbital electron populations 1.22230 0.91875 1.02632 1.05027 1.21905 0.96116 0.94208 0.84312 1.22258 1.02066 0.91571 1.05950 1.49252 1.43086 1.06573 1.09681 1.23148 0.98298 1.00249 0.84281 1.19582 1.13749 0.93519 0.95685 1.20130 0.97389 0.97937 0.92725 1.17229 1.04086 0.95048 0.84106 1.43550 1.60233 1.18754 1.07795 1.22639 0.75987 0.82431 0.91341 1.90640 1.45822 1.33424 1.74248 1.21652 0.96600 0.98553 0.85780 0.86522 1.58991 1.10379 1.05027 1.60266 1.21425 0.91085 1.00721 0.98995 1.18842 0.94265 0.95658 0.91131 1.21772 0.95481 1.47585 0.93140 0.92672 1.25877 1.02429 0.95217 0.96097 1.70106 1.36878 1.50391 0.99550 0.85511 0.80151 0.77751 0.78272 1.18917 1.20303 1.20798 1.20777 0.98076 0.98184 0.93035 1.19806 1.03624 0.96019 0.93864 1.21115 0.99271 0.95817 0.91648 1.77627 1.27580 0.93657 1.18798 0.91026 0.87453 0.93729 0.87903 0.92003 0.87340 0.89708 0.75483 0.82192 0.73607 0.83957 0.84062 0.93873 0.91191 0.98437 0.97530 0.92982 0.85824 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.52 71.98 0.69 -0.31 16 2 C 0.13 1.14 3.88 44.99 0.17 1.32 16 3 C -0.16 -0.34 8.81 71.98 0.63 0.30 16 4 N -0.31 -5.26 3.47 -325.72 -1.13 -6.39 16 5 C 0.10 1.39 10.61 84.35 0.89 2.29 16 6 C -0.22 -4.67 6.33 -20.24 -0.13 -4.80 16 7 C -0.06 -1.21 9.96 22.51 0.22 -0.98 16 8 C 0.09 2.33 6.23 37.83 0.24 2.57 16 9 N -0.66 -16.07 5.31 -304.29 -1.61 -17.68 16 10 C 0.49 14.81 6.89 87.66 0.60 15.41 16 11 O -0.56 -20.21 13.63 -3.09 -0.04 -20.25 16 12 C 0.09 2.87 3.15 44.17 0.14 3.01 16 13 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 14 N -0.82 -27.05 8.44 -171.81 -1.45 -28.50 16 15 C -0.08 -3.29 4.78 30.60 0.15 -3.14 16 16 C 0.04 1.95 4.86 29.85 0.15 2.10 16 17 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 18 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 19 C 0.00 0.09 5.46 84.65 0.46 0.55 16 20 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 21 Si 0.96 44.46 29.54 68.60 2.03 46.48 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 C -0.08 -2.30 8.53 22.12 0.19 -2.11 16 26 C -0.11 -3.19 10.07 22.37 0.23 -2.97 16 27 C 0.07 2.03 7.49 42.15 0.32 2.34 16 28 N -0.35 -9.13 12.54 -48.68 -0.61 -9.74 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.04 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.08 -0.05 7.05 -2.39 -0.02 -0.07 16 36 H 0.23 0.88 7.14 -2.91 -0.02 0.86 16 37 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.43 7.90 8.81 -92.71 -0.82 7.08 16 39 H 0.35 9.87 9.06 -89.69 -0.81 9.06 16 40 H 0.35 11.76 8.58 -89.69 -0.77 10.99 16 41 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 44 H 0.01 0.35 7.75 -2.38 -0.02 0.34 16 45 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 46 H 0.12 4.11 6.14 -2.91 -0.02 4.09 16 47 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -78.85 391.33 1.25 -77.59 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -1.39 Total: 29.25 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 5.18 Total: -14.74 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -4.52 Total: -118.33 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.04 Total: -20.25 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -78.85 1.25 -77.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424122918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.828 kcal (2) G-P(sol) polarization free energy of solvation -78.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds