Wall clock time and date at job start Tue Mar 31 2020 15:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47156 * 2 1 4 4 N 1.46496 * 109.47175 * 239.99443 * 2 1 3 5 5 C 1.34097 * 125.02925 * 84.99902 * 4 2 1 6 6 C 1.38240 * 107.89628 * 179.97438 * 5 4 2 7 7 C 1.41140 * 134.74172 * 179.97438 * 6 5 4 8 8 C 1.36221 * 119.48624 * 180.02562 * 7 6 5 9 9 N 1.40086 * 119.21285 * 179.97438 * 8 7 6 10 10 C 1.34776 * 119.99874 * 214.10220 * 9 8 7 11 11 O 1.21292 * 119.99886 * 5.28396 * 10 9 8 12 12 C 1.50700 * 119.99956 * 185.28339 * 10 9 8 13 13 H 1.08997 * 109.47074 * 319.99593 * 12 10 9 14 14 N 1.46900 * 109.46650 * 199.99993 * 12 10 9 15 15 C 1.52992 * 109.47181 * 80.00145 * 12 10 9 16 16 C 1.52995 * 109.47556 * 184.99972 * 15 12 10 17 17 C 1.50699 * 109.47480 * 180.02562 * 16 15 12 18 18 H 1.07997 * 120.00086 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99735 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00362 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99761 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46878 * 59.99970 * 21 19 17 23 23 H 1.48494 * 109.47067 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47432 * 299.99852 * 21 19 17 25 25 C 1.40217 * 121.57083 * 359.96801 * 8 7 6 26 26 C 1.35519 * 121.75991 * 0.02562 * 25 8 7 27 27 C 1.41194 * 119.69985 * 359.97438 * 26 25 8 28 28 N 1.32109 * 134.56961 * 180.33198 * 27 26 25 29 29 H 1.08994 * 109.47138 * 60.00183 * 1 2 3 30 30 H 1.09006 * 109.47398 * 300.00469 * 1 2 3 31 31 H 1.09000 * 109.47259 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46888 * 119.99406 * 2 1 3 33 33 H 1.09006 * 109.47350 * 59.99502 * 3 2 1 34 34 H 1.08997 * 109.47354 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47160 * 299.99804 * 3 2 1 36 36 H 1.08003 * 126.05425 * 0.03023 * 5 4 2 37 37 H 1.08004 * 120.25889 * 0.02562 * 7 6 5 38 38 H 0.96997 * 119.99850 * 34.10040 * 9 8 7 39 39 H 1.00909 * 110.99498 * 176.04687 * 14 12 10 40 40 H 1.00900 * 111.00264 * 299.99762 * 14 12 10 41 41 H 1.09006 * 109.47215 * 304.99994 * 15 12 10 42 42 H 1.09002 * 109.47403 * 64.99787 * 15 12 10 43 43 H 1.09006 * 109.46876 * 300.00230 * 16 15 12 44 44 H 1.09002 * 109.46915 * 59.99517 * 16 15 12 45 45 H 0.96993 * 119.99889 * 179.97438 * 20 19 17 46 46 H 1.08000 * 119.11488 * 179.97438 * 25 8 7 47 47 H 1.08000 * 120.15076 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1846 -0.1223 -2.3992 6 6 2.6590 -1.0904 -3.2645 7 6 3.0191 -1.1130 -4.6290 8 6 3.4627 -2.2742 -5.1862 9 7 3.8181 -2.2902 -6.5411 10 6 3.5979 -3.3941 -7.2825 11 8 3.0060 -4.3382 -6.8034 12 6 4.0871 -3.4552 -8.7065 13 1 3.9277 -2.4900 -9.1872 14 7 3.3454 -4.4933 -9.4348 15 6 5.5796 -3.7910 -8.7191 16 6 6.1040 -3.7308 -10.1552 17 6 7.5740 -4.0622 -10.1676 18 1 8.0835 -4.2923 -9.2436 19 6 8.2687 -4.0705 -11.3585 20 7 7.6484 -3.7897 -12.4838 21 14 10.0911 -4.4806 -11.3739 22 1 10.2955 -5.8471 -10.8297 23 1 10.5999 -4.4222 -12.7677 24 1 10.8264 -3.4991 -10.5365 25 6 3.5723 -3.4536 -4.4359 26 6 3.2424 -3.4965 -3.1221 27 6 2.7752 -2.3292 -2.4797 28 7 2.3874 -2.0395 -1.2505 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.9844 0.9095 -2.6479 37 1 2.9435 -0.2166 -5.2267 38 1 4.2226 -1.5070 -6.9458 39 1 3.6096 -4.5106 -10.4085 40 1 3.4771 -5.3983 -9.0083 41 1 6.1194 -3.0703 -8.1047 42 1 5.7299 -4.7939 -8.3193 43 1 5.5642 -4.4514 -10.7695 44 1 5.9537 -2.7279 -10.5550 45 1 8.1372 -3.7952 -13.3215 46 1 3.9283 -4.3520 -4.9180 47 1 3.3373 -4.4191 -2.5688 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424122921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:46 Heat of formation + Delta-G solvation = 49.221215 kcal Electronic energy + Delta-G solvation = -26958.378733 eV Core-core repulsion = 23142.234105 eV Total energy + Delta-G solvation = -3816.144628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.52310 -40.14157 -37.77289 -35.91217 -35.30629 -33.76675 -32.85330 -31.84404 -29.91181 -29.78886 -28.67466 -27.87110 -26.46837 -24.75053 -23.83721 -22.26117 -21.44076 -20.74111 -20.26020 -19.77332 -17.92137 -17.59157 -16.99875 -16.50968 -16.21079 -15.69637 -15.12088 -14.85869 -14.61767 -14.55461 -14.42846 -14.02752 -14.00279 -13.62958 -13.50915 -13.19324 -13.04476 -12.99876 -12.89911 -12.67380 -12.28824 -12.17209 -11.84566 -11.82168 -11.68763 -11.44279 -11.08788 -10.91665 -10.71526 -10.53108 -10.41403 -10.00432 -9.93534 -9.61393 -9.32028 -9.23608 -8.52877 -8.44289 -8.22441 -7.38690 -6.09030 -4.12220 0.51517 1.72346 2.04757 2.28895 2.88249 3.16459 3.28652 3.33509 3.36083 3.85339 3.87399 4.23645 4.24644 4.39120 4.43628 4.52190 4.81675 4.84964 4.88534 5.04325 5.04532 5.14102 5.15404 5.22432 5.27074 5.28294 5.39148 5.48833 5.53197 5.53646 5.58010 5.71947 5.96796 6.18825 6.25833 6.34423 6.40375 6.50238 6.53746 6.66595 6.85242 6.98099 7.38863 7.50118 7.52529 7.58483 7.64285 7.87294 7.88711 8.29874 8.36095 8.93480 9.52731 11.01749 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022402 B = 0.001980 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.561615 B =14140.415023 C =14600.928698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.145 3.855 3 C -0.166 4.166 4 N -0.319 5.319 5 C 0.066 3.934 6 C -0.183 4.183 7 C -0.092 4.092 8 C 0.134 3.866 9 N -0.677 5.677 10 C 0.525 3.475 11 O -0.519 6.519 12 C 0.076 3.924 13 H 0.099 0.901 14 N -0.830 5.830 15 C -0.138 4.138 16 C 0.025 3.975 17 C -0.525 4.525 18 H 0.054 0.946 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.067 4.067 26 C -0.092 4.092 27 C 0.095 3.905 28 N -0.308 5.308 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.180 0.820 37 H 0.126 0.874 38 H 0.411 0.589 39 H 0.356 0.644 40 H 0.346 0.654 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.262 0.738 46 H 0.140 0.860 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.281 12.211 23.117 29.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 C -0.225 4.225 4 N -0.095 5.095 5 C -0.089 4.089 6 C -0.193 4.193 7 C -0.116 4.116 8 C 0.039 3.961 9 N -0.323 5.323 10 C 0.313 3.687 11 O -0.393 6.393 12 C -0.039 4.039 13 H 0.117 0.883 14 N -0.363 5.363 15 C -0.178 4.178 16 C -0.013 4.013 17 C -0.563 4.563 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.091 4.091 26 C -0.113 4.113 27 C -0.059 4.059 28 N -0.135 5.135 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.197 0.803 37 H 0.144 0.856 38 H 0.247 0.753 39 H 0.171 0.829 40 H 0.159 0.841 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.158 0.842 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.567 11.505 24.753 30.940 hybrid contribution 2.320 0.220 -1.291 2.665 sum -12.246 11.725 23.462 28.947 Atomic orbital electron populations 1.22242 0.93003 1.03693 1.03363 1.21459 0.95283 0.92966 0.85886 1.22240 1.02599 0.93638 1.03983 1.48772 1.44817 1.07655 1.08249 1.22386 1.02022 0.98984 0.85523 1.19219 1.11706 0.93258 0.95103 1.19777 1.01222 0.97777 0.92831 1.17105 1.00692 0.94473 0.83829 1.43655 1.62633 1.17879 1.08138 1.21087 0.77526 0.81580 0.88476 1.90650 1.39219 1.36378 1.73021 1.21469 0.94054 0.98546 0.89826 0.88348 1.58744 1.61308 1.09033 1.07199 1.22401 0.91616 1.01179 1.02608 1.19100 0.95947 0.97431 0.88777 1.21139 0.94380 1.47595 0.93179 0.92733 1.25011 0.98444 0.95188 0.95653 1.69936 1.36344 1.48807 0.98087 0.86640 0.85239 0.79031 0.77007 1.20217 1.21229 1.20217 1.20746 0.97618 0.97942 0.92766 1.19748 1.02445 0.95400 0.93753 1.20960 0.99017 0.95048 0.90860 1.77671 1.25708 0.91481 1.18607 0.91648 0.90146 0.91341 0.87456 0.89658 0.91199 0.91248 0.80306 0.85600 0.75298 0.82883 0.84055 0.92371 0.92535 0.96352 0.96281 0.92821 0.84215 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 9.52 37.16 0.35 -0.42 16 2 C 0.15 0.84 3.88 -67.94 -0.26 0.58 16 3 C -0.17 -0.55 8.80 37.16 0.33 -0.22 16 4 N -0.32 -3.11 3.47 -54.30 -0.19 -3.29 16 5 C 0.07 0.60 10.61 -16.56 -0.18 0.43 16 6 C -0.18 -2.22 6.33 -105.20 -0.67 -2.89 16 7 C -0.09 -1.09 9.95 -39.21 -0.39 -1.48 16 8 C 0.13 1.84 6.20 -84.07 -0.52 1.32 16 9 N -0.68 -8.98 5.31 -10.11 -0.05 -9.03 16 10 C 0.53 8.48 6.78 -10.99 -0.07 8.40 16 11 O -0.52 -9.77 13.92 5.55 0.08 -9.69 16 12 C 0.08 1.25 3.21 -68.87 -0.22 1.03 16 13 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 14 N -0.83 -13.93 8.94 -5.66 -0.05 -13.98 16 15 C -0.14 -2.63 4.78 -26.74 -0.13 -2.76 16 16 C 0.02 0.58 4.74 -27.89 -0.13 0.45 16 17 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 21 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.07 -0.98 8.49 -39.81 -0.34 -1.32 16 26 C -0.09 -1.27 10.07 -39.43 -0.40 -1.66 16 27 C 0.09 1.32 7.49 -83.03 -0.62 0.70 16 28 N -0.31 -4.12 12.54 33.26 0.42 -3.70 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.18 7.05 -51.93 -0.37 -0.19 16 36 H 0.18 0.93 7.14 -52.48 -0.37 0.56 16 37 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 38 H 0.41 4.32 8.81 -40.82 -0.36 3.96 16 39 H 0.36 5.98 7.55 -39.29 -0.30 5.68 16 40 H 0.35 5.87 8.58 -39.29 -0.34 5.53 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.14 2.18 6.36 -52.49 -0.33 1.85 16 47 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 389.69 15.07 5.87 5.87 Total: -1.00 -33.96 389.69 -8.91 -42.87 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -7.04 Total: 10.70 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -3.66 Total: -10.85 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.86 Total: -55.05 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.96 -8.91 -42.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424122921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.093 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds