Wall clock time and date at job start Tue Mar 31 2020 15:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47156 * 2 1 4 4 N 1.46496 * 109.47175 * 239.99443 * 2 1 3 5 5 C 1.34097 * 125.02925 * 84.99902 * 4 2 1 6 6 C 1.38240 * 107.89628 * 179.97438 * 5 4 2 7 7 C 1.41140 * 134.74172 * 179.97438 * 6 5 4 8 8 C 1.36221 * 119.48624 * 180.02562 * 7 6 5 9 9 N 1.40086 * 119.21285 * 179.97438 * 8 7 6 10 10 C 1.34776 * 119.99874 * 214.10220 * 9 8 7 11 11 O 1.21292 * 119.99886 * 5.28396 * 10 9 8 12 12 C 1.50700 * 119.99956 * 185.28339 * 10 9 8 13 13 H 1.08997 * 109.47074 * 319.99593 * 12 10 9 14 14 N 1.46900 * 109.46650 * 199.99993 * 12 10 9 15 15 C 1.52992 * 109.47181 * 80.00145 * 12 10 9 16 16 C 1.52995 * 109.47556 * 184.99972 * 15 12 10 17 17 C 1.50699 * 109.47480 * 180.02562 * 16 15 12 18 18 H 1.07997 * 120.00086 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99735 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00362 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99761 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46878 * 59.99970 * 21 19 17 23 23 H 1.48494 * 109.47067 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47432 * 299.99852 * 21 19 17 25 25 C 1.40217 * 121.57083 * 359.96801 * 8 7 6 26 26 C 1.35519 * 121.75991 * 0.02562 * 25 8 7 27 27 C 1.41194 * 119.69985 * 359.97438 * 26 25 8 28 28 N 1.32109 * 134.56961 * 180.33198 * 27 26 25 29 29 H 1.08994 * 109.47138 * 60.00183 * 1 2 3 30 30 H 1.09006 * 109.47398 * 300.00469 * 1 2 3 31 31 H 1.09000 * 109.47259 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46888 * 119.99406 * 2 1 3 33 33 H 1.09006 * 109.47350 * 59.99502 * 3 2 1 34 34 H 1.08997 * 109.47354 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47160 * 299.99804 * 3 2 1 36 36 H 1.08003 * 126.05425 * 0.03023 * 5 4 2 37 37 H 1.08004 * 120.25889 * 0.02562 * 7 6 5 38 38 H 0.96997 * 119.99850 * 34.10040 * 9 8 7 39 39 H 1.00909 * 110.99498 * 176.04687 * 14 12 10 40 40 H 1.00900 * 111.00264 * 299.99762 * 14 12 10 41 41 H 1.09006 * 109.47215 * 304.99994 * 15 12 10 42 42 H 1.09002 * 109.47403 * 64.99787 * 15 12 10 43 43 H 1.09006 * 109.46876 * 300.00230 * 16 15 12 44 44 H 1.09002 * 109.46915 * 59.99517 * 16 15 12 45 45 H 0.96993 * 119.99889 * 179.97438 * 20 19 17 46 46 H 1.08000 * 119.11488 * 179.97438 * 25 8 7 47 47 H 1.08000 * 120.15076 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1846 -0.1223 -2.3992 6 6 2.6590 -1.0904 -3.2645 7 6 3.0191 -1.1130 -4.6290 8 6 3.4627 -2.2742 -5.1862 9 7 3.8181 -2.2902 -6.5411 10 6 3.5979 -3.3941 -7.2825 11 8 3.0060 -4.3382 -6.8034 12 6 4.0871 -3.4552 -8.7065 13 1 3.9277 -2.4900 -9.1872 14 7 3.3454 -4.4933 -9.4348 15 6 5.5796 -3.7910 -8.7191 16 6 6.1040 -3.7308 -10.1552 17 6 7.5740 -4.0622 -10.1676 18 1 8.0835 -4.2923 -9.2436 19 6 8.2687 -4.0705 -11.3585 20 7 7.6484 -3.7897 -12.4838 21 14 10.0911 -4.4806 -11.3739 22 1 10.2955 -5.8471 -10.8297 23 1 10.5999 -4.4222 -12.7677 24 1 10.8264 -3.4991 -10.5365 25 6 3.5723 -3.4536 -4.4359 26 6 3.2424 -3.4965 -3.1221 27 6 2.7752 -2.3292 -2.4797 28 7 2.3874 -2.0395 -1.2505 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.9844 0.9095 -2.6479 37 1 2.9435 -0.2166 -5.2267 38 1 4.2226 -1.5070 -6.9458 39 1 3.6096 -4.5106 -10.4085 40 1 3.4771 -5.3983 -9.0083 41 1 6.1194 -3.0703 -8.1047 42 1 5.7299 -4.7939 -8.3193 43 1 5.5642 -4.4514 -10.7695 44 1 5.9537 -2.7279 -10.5550 45 1 8.1372 -3.7952 -13.3215 46 1 3.9283 -4.3520 -4.9180 47 1 3.3373 -4.4191 -2.5688 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424122921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:45 Heat of formation + Delta-G solvation = 25.983165 kcal Electronic energy + Delta-G solvation = -26959.386411 eV Core-core repulsion = 23142.234105 eV Total energy + Delta-G solvation = -3817.152306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.38365 -41.30870 -38.74936 -37.09091 -36.40295 -34.86923 -34.66494 -32.77371 -31.66653 -30.60195 -29.65307 -28.25540 -27.92918 -25.98739 -25.14357 -23.34506 -22.38508 -22.14482 -21.12945 -20.90441 -18.97315 -18.87410 -18.15581 -17.74221 -17.47831 -16.59951 -16.40732 -16.14518 -15.89646 -15.74453 -15.38105 -15.21444 -14.97459 -14.73355 -14.55971 -14.27365 -14.12494 -14.00779 -13.96357 -13.45051 -13.24331 -13.17257 -12.97155 -12.91201 -12.70957 -12.56254 -12.53231 -12.28680 -12.04846 -11.77712 -11.70396 -11.43694 -11.30448 -11.29789 -10.76711 -10.58580 -10.53626 -9.63954 -9.48328 -8.33617 -8.19657 -6.29608 -0.36440 0.68668 1.38896 1.40141 1.41247 1.42284 1.50241 1.67164 2.05526 2.41267 2.86070 3.13877 3.19893 3.63307 3.69294 3.76464 3.79424 3.89099 4.05656 4.08810 4.14403 4.25495 4.29755 4.34809 4.42688 4.55527 4.64364 4.68842 4.73006 4.80117 4.84630 4.85915 5.06933 5.11190 5.13684 5.18834 5.23998 5.35018 5.46084 5.49001 5.52572 5.68566 5.82957 5.93202 6.01468 6.09291 6.23507 6.49477 6.50967 6.63943 6.85659 7.19508 7.39173 8.90601 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022402 B = 0.001980 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.561615 B =14140.415023 C =14600.928698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 C -0.161 4.161 4 N -0.312 5.312 5 C 0.097 3.903 6 C -0.214 4.214 7 C -0.062 4.062 8 C 0.096 3.904 9 N -0.659 5.659 10 C 0.527 3.473 11 O -0.552 6.552 12 C 0.085 3.915 13 H 0.116 0.884 14 N -0.830 5.830 15 C -0.122 4.122 16 C 0.030 3.970 17 C -0.545 4.545 18 H 0.054 0.946 19 C 0.006 3.994 20 N -0.925 5.925 21 Si 0.957 3.043 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.268 1.268 25 C -0.077 4.077 26 C -0.109 4.109 27 C 0.073 3.927 28 N -0.348 5.348 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.043 0.957 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.229 0.771 37 H 0.161 0.839 38 H 0.425 0.575 39 H 0.354 0.646 40 H 0.344 0.656 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.003 0.997 44 H 0.005 0.995 45 H 0.264 0.736 46 H 0.119 0.881 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.655 15.450 24.545 32.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 C -0.218 4.218 4 N -0.086 5.086 5 C -0.060 4.060 6 C -0.224 4.224 7 C -0.085 4.085 8 C 0.002 3.998 9 N -0.306 5.306 10 C 0.315 3.685 11 O -0.428 6.428 12 C -0.030 4.030 13 H 0.134 0.866 14 N -0.362 5.362 15 C -0.162 4.162 16 C -0.007 4.007 17 C -0.583 4.583 18 H 0.072 0.928 19 C -0.193 4.193 20 N -0.565 5.565 21 Si 0.782 3.218 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.193 1.193 25 C -0.100 4.100 26 C -0.130 4.130 27 C -0.079 4.079 28 N -0.176 5.176 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.245 0.755 37 H 0.178 0.822 38 H 0.263 0.737 39 H 0.169 0.831 40 H 0.157 0.843 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.022 0.978 44 H 0.023 0.977 45 H 0.072 0.928 46 H 0.137 0.863 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.937 14.770 26.228 33.603 hybrid contribution 2.334 -0.643 -1.554 2.876 sum -12.603 14.127 24.675 31.101 Atomic orbital electron populations 1.22228 0.91890 1.02633 1.05015 1.21900 0.96104 0.94204 0.84322 1.22259 1.02059 0.91584 1.05936 1.49243 1.43039 1.06687 1.09670 1.23137 0.98395 1.00209 0.84303 1.19576 1.13619 0.93486 0.95702 1.20092 0.97653 0.97923 0.92798 1.17154 1.03827 0.95055 0.83787 1.43384 1.61871 1.17453 1.07927 1.20914 0.77426 0.81972 0.88222 1.90642 1.40994 1.37724 1.73461 1.21384 0.92009 0.99122 0.90524 0.86611 1.58762 1.61175 1.09127 1.07135 1.22146 0.93641 1.00869 0.99511 1.18971 0.94541 0.95911 0.91306 1.21597 0.96177 1.47312 0.93248 0.92799 1.25840 1.02907 0.95133 0.95378 1.70047 1.38012 1.49841 0.98592 0.85625 0.80022 0.78967 0.77182 1.19787 1.20824 1.19266 1.20642 0.98289 0.97937 0.93159 1.19778 1.03418 0.96060 0.93784 1.21099 0.99400 0.95793 0.91625 1.77620 1.27467 0.93821 1.18683 0.91027 0.87459 0.93735 0.87907 0.87353 0.92008 0.89710 0.75478 0.82164 0.73656 0.83062 0.84300 0.91423 0.93718 0.97840 0.97655 0.92760 0.86261 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.52 71.98 0.69 -0.38 16 2 C 0.13 1.20 3.88 44.99 0.17 1.38 16 3 C -0.16 -0.40 8.80 71.98 0.63 0.24 16 4 N -0.31 -5.43 3.47 -325.72 -1.13 -6.56 16 5 C 0.10 1.44 10.61 84.35 0.89 2.33 16 6 C -0.21 -4.79 6.33 -20.24 -0.13 -4.92 16 7 C -0.06 -1.31 9.95 22.51 0.22 -1.09 16 8 C 0.10 2.60 6.20 37.83 0.23 2.83 16 9 N -0.66 -16.94 5.31 -304.29 -1.62 -18.56 16 10 C 0.53 17.02 6.78 87.66 0.59 17.61 16 11 O -0.55 -21.38 13.92 -3.07 -0.04 -21.42 16 12 C 0.08 2.76 3.21 44.17 0.14 2.90 16 13 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 14 N -0.83 -28.16 8.94 -171.82 -1.54 -29.70 16 15 C -0.12 -4.65 4.78 30.59 0.15 -4.51 16 16 C 0.03 1.44 4.74 29.85 0.14 1.58 16 17 C -0.55 -29.76 9.11 25.60 0.23 -29.52 16 18 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 19 C 0.01 0.33 5.46 84.65 0.46 0.80 16 20 N -0.93 -53.87 13.29 21.45 0.28 -53.58 16 21 Si 0.96 43.34 29.54 68.60 2.03 45.36 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C -0.08 -2.35 8.49 22.12 0.19 -2.17 16 26 C -0.11 -3.20 10.07 22.37 0.23 -2.97 16 27 C 0.07 2.06 7.49 42.16 0.32 2.37 16 28 N -0.35 -9.31 12.54 -48.67 -0.61 -9.92 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.10 1.02 8.14 -2.38 -0.02 1.01 16 33 H 0.11 -0.17 8.14 -2.38 -0.02 -0.19 16 34 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.08 -0.02 7.05 -2.39 -0.02 -0.04 16 36 H 0.23 1.00 7.14 -2.91 -0.02 0.97 16 37 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 38 H 0.42 8.15 8.81 -92.71 -0.82 7.33 16 39 H 0.35 12.11 7.55 -89.69 -0.68 11.44 16 40 H 0.34 11.98 8.58 -89.69 -0.77 11.21 16 41 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 42 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.00 0.17 6.87 -2.38 -0.02 0.15 16 44 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 46 H 0.12 4.05 6.36 -2.91 -0.02 4.03 16 47 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -75.97 389.69 1.29 -74.68 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -1.25 Total: 33.20 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 5.17 Total: -13.51 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -4.61 Total: -118.32 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.04 Total: -21.42 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -75.97 1.29 -74.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424122921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.666 kcal (2) G-P(sol) polarization free energy of solvation -75.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds