Wall clock time and date at job start Tue Mar 31 2020 15:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46924 * 2 1 4 4 H 1.09004 * 109.47095 * 54.99980 * 3 2 1 5 5 N 1.46496 * 109.47353 * 295.00193 * 3 2 1 6 6 C 1.34772 * 120.00222 * 84.99928 * 5 3 2 7 7 O 1.21283 * 119.99912 * 359.97438 * 6 5 3 8 8 C 1.50700 * 119.99971 * 180.02562 * 6 5 3 9 9 H 1.09001 * 109.46817 * 319.98961 * 8 6 5 10 10 N 1.46910 * 109.46728 * 199.99907 * 8 6 5 11 11 C 1.52992 * 109.47798 * 79.99728 * 8 6 5 12 12 C 1.52997 * 109.47482 * 185.00026 * 11 8 6 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.50699 * 109.47121 * 174.99885 * 3 2 1 22 22 N 1.30116 * 124.94914 * 304.69905 * 21 3 2 23 23 C 1.35785 * 109.63920 * 179.86831 * 22 21 3 24 24 C 1.39741 * 133.59783 * 180.10992 * 23 22 21 25 25 C 1.36608 * 119.88580 * 180.29842 * 24 23 22 26 26 C 1.38772 * 120.66756 * 359.97438 * 25 24 23 27 27 C 1.37856 * 120.45262 * 0.05616 * 26 25 24 28 28 C 1.38833 * 119.69048 * 359.92430 * 27 26 25 29 29 N 1.36037 * 124.95125 * 125.00280 * 21 3 2 30 30 H 0.97001 * 126.34541 * 359.93958 * 29 21 3 31 31 H 1.08997 * 109.47062 * 299.99616 * 1 2 3 32 32 H 1.08995 * 109.46720 * 60.00057 * 1 2 3 33 33 H 1.08997 * 109.46960 * 179.97438 * 1 2 3 34 34 H 1.08990 * 109.47362 * 240.00190 * 2 1 3 35 35 H 1.09001 * 109.47235 * 119.99486 * 2 1 3 36 36 H 0.97003 * 119.99378 * 265.00072 * 5 3 2 37 37 H 1.00894 * 110.99558 * 176.04306 * 10 8 6 38 38 H 1.00892 * 110.99957 * 299.99600 * 10 8 6 39 39 H 1.09002 * 109.47103 * 64.99779 * 11 8 6 40 40 H 1.08998 * 109.46862 * 305.00591 * 11 8 6 41 41 H 1.09002 * 109.47153 * 59.99783 * 12 11 8 42 42 H 1.09001 * 109.46832 * 299.99974 * 12 11 8 43 43 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 44 44 H 1.08002 * 120.05663 * 0.32669 * 24 23 22 45 45 H 1.08003 * 119.66400 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.77183 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.15307 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0976 -1.2517 6 6 0.4351 2.6645 -1.3669 7 8 -0.3396 2.6319 -0.4343 8 6 0.0363 3.3378 -2.6548 9 1 0.8859 3.8924 -3.0530 10 7 -1.0761 4.2628 -2.3996 11 6 -0.4027 2.2797 -3.6689 12 6 -0.6884 2.9501 -5.0142 13 6 -1.1202 1.9077 -6.0133 14 1 -1.1848 0.8709 -5.7181 15 6 -1.4337 2.2779 -7.3039 16 7 -1.3554 3.5406 -7.6631 17 14 -1.9696 0.9860 -8.5420 18 1 -3.1994 0.3121 -8.0534 19 1 -2.2467 1.6367 -9.8478 20 1 -0.8882 -0.0180 -8.7094 21 6 3.5419 1.4444 0.1239 22 7 4.2120 0.8640 1.0763 23 6 5.5418 1.0585 0.8827 24 6 6.6853 0.6639 1.5823 25 6 7.9209 1.0297 1.1287 26 6 8.0549 1.7913 -0.0236 27 6 6.9409 2.1925 -0.7295 28 6 5.6770 1.8298 -0.2839 29 7 4.3944 2.0582 -0.7405 30 1 4.1469 2.5620 -1.5316 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5137 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.2720 2.1232 -1.9977 37 1 -1.3197 4.7743 -3.2344 38 1 -1.8765 3.7724 -2.0295 39 1 -1.3056 1.7853 -3.3104 40 1 0.3908 1.5426 -3.7914 41 1 0.2145 3.4445 -5.3727 42 1 -1.4820 3.6872 -4.8915 43 1 -1.5756 3.8010 -8.5712 44 1 6.5924 0.0703 2.4798 45 1 8.8022 0.7231 1.6724 46 1 9.0388 2.0721 -0.3694 47 1 7.0508 2.7855 -1.6254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424159016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:34 Heat of formation + Delta-G solvation = 18.097779 kcal Electronic energy + Delta-G solvation = -27773.551626 eV Core-core repulsion = 23956.057384 eV Total energy + Delta-G solvation = -3817.494242 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.52451 -40.08253 -37.80329 -36.14754 -35.28037 -33.60757 -32.94560 -32.29263 -30.26858 -30.04626 -29.91160 -27.46749 -26.07670 -23.94296 -22.96436 -22.46318 -21.98744 -20.96421 -20.59496 -20.00563 -18.40403 -17.60667 -17.38314 -16.42485 -16.25309 -15.74884 -15.55488 -15.18410 -14.76107 -14.56419 -14.53328 -14.29476 -14.18417 -13.92055 -13.59907 -13.26250 -12.95937 -12.83449 -12.34101 -12.23874 -12.02767 -11.86508 -11.78772 -11.68876 -11.51156 -11.15309 -11.04365 -10.97542 -10.86942 -10.75635 -10.26608 -10.08097 -10.01730 -9.40620 -9.32248 -9.29087 -8.67276 -8.50457 -8.40359 -8.30335 -6.15011 -4.18509 0.64166 1.22514 2.42489 2.44710 2.72354 2.86227 3.23939 3.29217 3.31445 3.59170 3.83663 4.22296 4.33760 4.65812 4.74720 4.75823 4.82234 4.96770 5.06564 5.06877 5.09963 5.14987 5.21243 5.38707 5.41856 5.42945 5.53332 5.62594 5.75064 5.77492 5.97228 6.02466 6.09727 6.16396 6.20805 6.21726 6.28262 6.40535 6.45001 6.57438 6.77422 6.94045 7.20770 7.41789 7.46418 7.53432 7.57257 7.79654 7.81790 8.21979 8.24780 8.87189 9.46857 10.95779 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.002582 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.403199 B =10842.866363 C =11762.542855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.228 3.772 4 H 0.121 0.879 5 N -0.739 5.739 6 C 0.532 3.468 7 O -0.520 6.520 8 C 0.075 3.925 9 H 0.095 0.905 10 N -0.830 5.830 11 C -0.138 4.138 12 C 0.025 3.975 13 C -0.526 4.526 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.286 3.714 22 N -0.481 5.481 23 C 0.049 3.951 24 C -0.064 4.064 25 C -0.128 4.128 26 C -0.103 4.103 27 C -0.109 4.109 28 C 0.048 3.952 29 N -0.595 5.595 30 H 0.423 0.577 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.396 0.604 37 H 0.356 0.644 38 H 0.347 0.653 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.017 0.983 42 H 0.018 0.982 43 H 0.263 0.737 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.264 -3.244 15.515 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C 0.121 3.879 4 H 0.138 0.862 5 N -0.394 5.394 6 C 0.319 3.681 7 O -0.393 6.393 8 C -0.040 4.040 9 H 0.113 0.887 10 N -0.362 5.362 11 C -0.177 4.177 12 C -0.012 4.012 13 C -0.564 4.564 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.019 3.981 22 N -0.202 5.202 23 C -0.069 4.069 24 C -0.084 4.084 25 C -0.149 4.149 26 C -0.123 4.123 27 C -0.130 4.130 28 C -0.062 4.062 29 N -0.207 5.207 30 H 0.262 0.738 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.230 0.770 37 H 0.171 0.829 38 H 0.160 0.840 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 15.822 -3.244 17.300 23.667 hybrid contribution -0.164 -0.522 -3.078 3.126 sum 15.658 -3.765 14.222 21.485 Atomic orbital electron populations 1.21818 0.93796 1.01229 1.03445 1.21904 0.97478 0.93471 1.03375 1.19423 0.82924 0.96178 0.89380 0.86176 1.46053 1.18142 1.59724 1.15504 1.20870 0.80309 0.76861 0.90050 1.90677 1.50518 1.57701 1.40436 1.21479 0.96966 0.94646 0.90897 0.88671 1.58745 1.11316 1.29619 1.36557 1.22395 1.00796 0.97278 0.97267 1.19093 0.96987 0.95937 0.89187 1.21127 1.45905 0.94005 0.95350 0.92756 1.25007 0.95423 0.95340 0.98483 1.69931 1.48593 1.15644 1.18993 0.86644 0.79247 0.81620 0.80437 1.20162 1.21185 1.20217 1.23609 0.94050 0.93170 0.87320 1.70330 1.02564 1.23720 1.23575 1.19090 0.91544 1.01010 0.95294 1.20032 0.89466 0.99524 0.99358 1.20663 0.96947 0.99945 0.97328 1.20902 0.97799 0.98264 0.95311 1.20016 0.88767 1.02910 1.01319 1.18906 0.86052 1.03143 0.98082 1.43013 1.04946 1.46780 1.25931 0.73773 0.91873 0.92014 0.93004 0.91584 0.89703 0.76998 0.82885 0.83988 0.92465 0.92577 0.96419 0.96357 0.92770 0.85283 0.85318 0.85207 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.51 37.16 0.32 -1.51 16 2 C -0.12 -1.39 5.57 -26.73 -0.15 -1.53 16 3 C 0.23 2.58 2.80 -69.08 -0.19 2.39 16 4 H 0.12 1.51 7.58 -51.93 -0.39 1.11 16 5 N -0.74 -8.29 4.91 -54.93 -0.27 -8.56 16 6 C 0.53 7.61 5.65 -10.99 -0.06 7.55 16 7 O -0.52 -8.69 13.39 5.55 0.07 -8.61 16 8 C 0.08 1.15 3.21 -68.86 -0.22 0.93 16 9 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 10 N -0.83 -13.11 8.94 -5.65 -0.05 -13.16 16 11 C -0.14 -2.49 4.78 -26.74 -0.13 -2.61 16 12 C 0.03 0.58 4.74 -27.88 -0.13 0.45 16 13 C -0.53 -13.95 9.11 -34.44 -0.31 -14.27 16 14 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 17 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.29 3.31 7.15 -154.82 -1.11 2.20 16 22 N -0.48 -6.32 11.14 -8.23 -0.09 -6.41 16 23 C 0.05 0.60 7.23 -84.70 -0.61 -0.01 16 24 C -0.06 -0.63 10.05 -39.61 -0.40 -1.03 16 25 C -0.13 -1.00 9.96 -39.97 -0.40 -1.40 16 26 C -0.10 -0.78 10.03 -39.52 -0.40 -1.17 16 27 C -0.11 -0.95 10.07 -39.50 -0.40 -1.35 16 28 C 0.05 0.52 7.30 -83.99 -0.61 -0.09 16 29 N -0.59 -5.91 5.94 -8.00 -0.05 -5.96 16 30 H 0.42 3.16 7.65 -40.82 -0.31 2.84 16 31 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 32 H 0.06 0.90 5.64 -51.93 -0.29 0.60 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.93 8.04 -51.93 -0.42 0.52 16 36 H 0.40 3.65 7.23 -40.82 -0.30 3.35 16 37 H 0.36 5.72 7.55 -39.29 -0.30 5.42 16 38 H 0.35 5.56 8.58 -39.30 -0.34 5.22 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 46 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 47 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -31.71 384.21 -10.66 -42.37 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -6.88 Total: 13.34 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -4.90 Total: -9.94 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.28 Total: -58.78 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.07 Total: -8.61 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.71 -10.66 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424159016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.465 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds