Wall clock time and date at job start Tue Mar 31 2020 15:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46924 * 2 1 4 4 H 1.09004 * 109.47095 * 54.99980 * 3 2 1 5 5 N 1.46496 * 109.47353 * 295.00193 * 3 2 1 6 6 C 1.34772 * 120.00222 * 84.99928 * 5 3 2 7 7 O 1.21283 * 119.99912 * 359.97438 * 6 5 3 8 8 C 1.50700 * 119.99971 * 180.02562 * 6 5 3 9 9 H 1.09001 * 109.46817 * 319.98961 * 8 6 5 10 10 N 1.46910 * 109.46728 * 199.99907 * 8 6 5 11 11 C 1.52992 * 109.47798 * 79.99728 * 8 6 5 12 12 C 1.52997 * 109.47482 * 185.00026 * 11 8 6 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.50699 * 109.47121 * 174.99885 * 3 2 1 22 22 N 1.30116 * 124.94914 * 304.69905 * 21 3 2 23 23 C 1.35785 * 109.63920 * 179.86831 * 22 21 3 24 24 C 1.39741 * 133.59783 * 180.10992 * 23 22 21 25 25 C 1.36608 * 119.88580 * 180.29842 * 24 23 22 26 26 C 1.38772 * 120.66756 * 359.97438 * 25 24 23 27 27 C 1.37856 * 120.45262 * 0.05616 * 26 25 24 28 28 C 1.38833 * 119.69048 * 359.92430 * 27 26 25 29 29 N 1.36037 * 124.95125 * 125.00280 * 21 3 2 30 30 H 0.97001 * 126.34541 * 359.93958 * 29 21 3 31 31 H 1.08997 * 109.47062 * 299.99616 * 1 2 3 32 32 H 1.08995 * 109.46720 * 60.00057 * 1 2 3 33 33 H 1.08997 * 109.46960 * 179.97438 * 1 2 3 34 34 H 1.08990 * 109.47362 * 240.00190 * 2 1 3 35 35 H 1.09001 * 109.47235 * 119.99486 * 2 1 3 36 36 H 0.97003 * 119.99378 * 265.00072 * 5 3 2 37 37 H 1.00894 * 110.99558 * 176.04306 * 10 8 6 38 38 H 1.00892 * 110.99957 * 299.99600 * 10 8 6 39 39 H 1.09002 * 109.47103 * 64.99779 * 11 8 6 40 40 H 1.08998 * 109.46862 * 305.00591 * 11 8 6 41 41 H 1.09002 * 109.47153 * 59.99783 * 12 11 8 42 42 H 1.09001 * 109.46832 * 299.99974 * 12 11 8 43 43 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 44 44 H 1.08002 * 120.05663 * 0.32669 * 24 23 22 45 45 H 1.08003 * 119.66400 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.77183 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.15307 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0976 -1.2517 6 6 0.4351 2.6645 -1.3669 7 8 -0.3396 2.6319 -0.4343 8 6 0.0363 3.3378 -2.6548 9 1 0.8859 3.8924 -3.0530 10 7 -1.0761 4.2628 -2.3996 11 6 -0.4027 2.2797 -3.6689 12 6 -0.6884 2.9501 -5.0142 13 6 -1.1202 1.9077 -6.0133 14 1 -1.1848 0.8709 -5.7181 15 6 -1.4337 2.2779 -7.3039 16 7 -1.3554 3.5406 -7.6631 17 14 -1.9696 0.9860 -8.5420 18 1 -3.1994 0.3121 -8.0534 19 1 -2.2467 1.6367 -9.8478 20 1 -0.8882 -0.0180 -8.7094 21 6 3.5419 1.4444 0.1239 22 7 4.2120 0.8640 1.0763 23 6 5.5418 1.0585 0.8827 24 6 6.6853 0.6639 1.5823 25 6 7.9209 1.0297 1.1287 26 6 8.0549 1.7913 -0.0236 27 6 6.9409 2.1925 -0.7295 28 6 5.6770 1.8298 -0.2839 29 7 4.3944 2.0582 -0.7405 30 1 4.1469 2.5620 -1.5316 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5137 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.2720 2.1232 -1.9977 37 1 -1.3197 4.7743 -3.2344 38 1 -1.8765 3.7724 -2.0295 39 1 -1.3056 1.7853 -3.3104 40 1 0.3908 1.5426 -3.7914 41 1 0.2145 3.4445 -5.3727 42 1 -1.4820 3.6872 -4.8915 43 1 -1.5756 3.8010 -8.5712 44 1 6.5924 0.0703 2.4798 45 1 8.8022 0.7231 1.6724 46 1 9.0388 2.0721 -0.3694 47 1 7.0508 2.7855 -1.6254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424159016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:33 Heat of formation + Delta-G solvation = -3.345972 kcal Electronic energy + Delta-G solvation = -27774.481497 eV Core-core repulsion = 23956.057384 eV Total energy + Delta-G solvation = -3818.424113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.31118 -41.22015 -38.57291 -37.34467 -36.52509 -34.85412 -34.41097 -33.30316 -31.68685 -30.97583 -30.77361 -28.62810 -27.43312 -25.53858 -23.73903 -23.24726 -22.93486 -22.37369 -21.54941 -21.22468 -19.31397 -18.75922 -18.33862 -18.05797 -17.24948 -16.74805 -16.61898 -16.37304 -16.11368 -15.81907 -15.61781 -15.23553 -14.99234 -14.95127 -14.83427 -14.55379 -14.34799 -13.92654 -13.85316 -13.43978 -12.96130 -12.93028 -12.80442 -12.68926 -12.61907 -12.55409 -12.46922 -12.44027 -11.95685 -11.79480 -11.77873 -11.68427 -11.31711 -11.07309 -10.77273 -10.56041 -10.33462 -9.64731 -9.38607 -9.14444 -8.22156 -6.31948 -0.07272 0.53919 1.39479 1.40368 1.48129 1.53797 1.61003 1.66167 1.86949 2.39100 2.89117 3.00447 3.11910 3.49129 3.64519 3.74597 3.86470 3.97992 4.08310 4.12514 4.17239 4.23852 4.32420 4.38703 4.45828 4.49751 4.56022 4.66177 4.80294 4.83614 4.83827 4.98302 5.06086 5.08963 5.11309 5.25878 5.41828 5.44002 5.47100 5.52678 5.58451 5.66113 5.80779 5.93861 6.03719 6.20742 6.22283 6.35038 6.47836 6.74699 6.83794 7.11247 7.37210 8.88226 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.002582 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.403199 B =10842.866363 C =11762.542855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C 0.237 3.763 4 H 0.108 0.892 5 N -0.722 5.722 6 C 0.537 3.463 7 O -0.544 6.544 8 C 0.082 3.918 9 H 0.111 0.889 10 N -0.830 5.830 11 C -0.120 4.120 12 C 0.030 3.970 13 C -0.544 4.544 14 H 0.054 0.946 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.955 3.045 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.268 1.268 21 C 0.278 3.722 22 N -0.507 5.507 23 C 0.013 3.987 24 C -0.083 4.083 25 C -0.122 4.122 26 C -0.097 4.097 27 C -0.118 4.118 28 C 0.034 3.966 29 N -0.587 5.587 30 H 0.432 0.568 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.408 0.592 37 H 0.353 0.647 38 H 0.345 0.655 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.003 0.997 42 H 0.002 0.998 43 H 0.264 0.736 44 H 0.134 0.866 45 H 0.159 0.841 46 H 0.162 0.838 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.373 -3.962 15.367 24.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C 0.130 3.870 4 H 0.126 0.874 5 N -0.377 5.377 6 C 0.324 3.676 7 O -0.420 6.420 8 C -0.034 4.034 9 H 0.129 0.871 10 N -0.361 5.361 11 C -0.160 4.160 12 C -0.007 4.007 13 C -0.582 4.582 14 H 0.073 0.927 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.193 1.193 21 C 0.010 3.990 22 N -0.228 5.228 23 C -0.104 4.104 24 C -0.103 4.103 25 C -0.142 4.142 26 C -0.116 4.116 27 C -0.139 4.139 28 C -0.076 4.076 29 N -0.200 5.200 30 H 0.274 0.726 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.244 0.756 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.072 0.928 44 H 0.152 0.848 45 H 0.176 0.824 46 H 0.180 0.820 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 17.962 -3.969 17.144 25.146 hybrid contribution -0.703 -0.289 -2.987 3.082 sum 17.259 -4.258 14.157 22.725 Atomic orbital electron populations 1.21742 0.94567 1.01427 1.01983 1.21829 0.96539 0.93434 1.03688 1.19261 0.83111 0.95963 0.88654 0.87395 1.45823 1.17344 1.58575 1.16000 1.20583 0.80880 0.76818 0.89292 1.90676 1.51505 1.58680 1.41096 1.21413 0.97270 0.93884 0.90794 0.87115 1.58764 1.11467 1.29614 1.36265 1.22130 1.00754 0.97729 0.95415 1.18964 0.95543 0.95082 0.91118 1.21596 1.45506 0.94772 0.96323 0.92736 1.25827 0.95621 0.97236 1.00528 1.70043 1.49730 1.17391 1.19433 0.85653 0.79051 0.79249 0.78025 1.19673 1.20943 1.19287 1.23410 0.93848 0.93920 0.87828 1.70242 1.03530 1.24590 1.24455 1.19514 0.91664 1.02544 0.96722 1.20309 0.89784 1.00284 0.99873 1.21062 0.97075 0.98739 0.97285 1.21369 0.98869 0.96827 0.94574 1.20386 0.88174 1.03121 1.02230 1.19228 0.86867 1.03407 0.98052 1.42925 1.04627 1.46515 1.25956 0.72620 0.92741 0.93951 0.91981 0.91244 0.89351 0.75579 0.83189 0.84177 0.93498 0.91556 0.97897 0.97927 0.92766 0.84762 0.82375 0.82025 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.51 71.98 0.61 -2.86 16 2 C -0.12 -2.56 5.57 30.60 0.17 -2.39 16 3 C 0.24 5.31 2.80 44.25 0.12 5.43 16 4 H 0.11 2.74 7.58 -2.38 -0.02 2.72 16 5 N -0.72 -15.61 4.91 -446.09 -2.19 -17.80 16 6 C 0.54 15.07 5.65 87.66 0.50 15.57 16 7 O -0.54 -18.15 13.39 -3.04 -0.04 -18.19 16 8 C 0.08 2.44 3.21 44.16 0.14 2.58 16 9 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 10 N -0.83 -26.14 8.94 -171.79 -1.54 -27.67 16 11 C -0.12 -4.31 4.78 30.59 0.15 -4.16 16 12 C 0.03 1.40 4.74 29.85 0.14 1.54 16 13 C -0.54 -28.88 9.11 25.60 0.23 -28.65 16 14 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 15 C 0.01 0.35 5.46 84.66 0.46 0.82 16 16 N -0.93 -53.13 13.29 21.45 0.28 -52.84 16 17 Si 0.95 42.51 29.54 68.60 2.03 44.53 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 C 0.28 6.35 7.15 137.92 0.99 7.33 16 22 N -0.51 -13.36 11.14 -179.96 -2.00 -15.37 16 23 C 0.01 0.32 7.23 39.45 0.29 0.61 16 24 C -0.08 -1.55 10.05 22.25 0.22 -1.33 16 25 C -0.12 -1.57 9.96 22.02 0.22 -1.35 16 26 C -0.10 -1.15 10.03 22.31 0.22 -0.93 16 27 C -0.12 -1.79 10.07 22.32 0.22 -1.57 16 28 C 0.03 0.71 7.30 38.86 0.28 0.99 16 29 N -0.59 -11.15 5.94 -179.23 -1.06 -12.22 16 30 H 0.43 5.90 7.65 -92.71 -0.71 5.19 16 31 H 0.05 1.43 7.85 -2.39 -0.02 1.41 16 32 H 0.04 1.21 5.64 -2.39 -0.01 1.20 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.92 8.04 -2.39 -0.02 1.90 16 36 H 0.41 6.94 7.23 -92.71 -0.67 6.27 16 37 H 0.35 11.45 7.55 -89.70 -0.68 10.77 16 38 H 0.35 11.14 8.58 -89.70 -0.77 10.37 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.00 0.12 6.87 -2.39 -0.02 0.10 16 43 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 44 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 45 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 46 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 47 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -68.41 384.21 -1.35 -69.76 By element: Atomic # 1 Polarization: 39.97 SS G_CDS: -1.80 Total: 38.17 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 4.97 Total: -8.37 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -6.51 Total: -125.90 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.04 Total: -18.19 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -68.41 -1.35 -69.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424159016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.412 kcal (2) G-P(sol) polarization free energy of solvation -68.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds