Wall clock time and date at job start Tue Mar 31 2020 15:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 6 6 C 1.34781 * 119.99874 * 85.00543 * 5 3 2 7 7 O 1.21278 * 120.00033 * 359.97438 * 6 5 3 8 8 C 1.50703 * 120.00101 * 179.97438 * 6 5 3 9 9 H 1.09003 * 109.46650 * 39.99617 * 8 6 5 10 10 N 1.46896 * 109.47223 * 159.99713 * 8 6 5 11 11 C 1.52994 * 109.46874 * 280.00079 * 8 6 5 12 12 C 1.53003 * 109.47209 * 175.00164 * 11 8 6 13 13 C 1.50699 * 109.47498 * 179.97438 * 12 11 8 14 14 H 1.07995 * 119.99653 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00081 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99845 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99994 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46713 * 60.00248 * 17 15 13 19 19 H 1.48498 * 109.47286 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47020 * 300.00436 * 17 15 13 21 21 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 22 22 N 1.30104 * 124.95342 * 304.69583 * 21 3 2 23 23 C 1.35782 * 109.64563 * 179.86762 * 22 21 3 24 24 C 1.39743 * 133.59693 * 180.11227 * 23 22 21 25 25 C 1.36612 * 119.88226 * 180.30273 * 24 23 22 26 26 C 1.38773 * 120.66879 * 359.97412 * 25 24 23 27 27 C 1.37857 * 120.45291 * 0.06630 * 26 25 24 28 28 C 1.38837 * 119.68902 * 359.91454 * 27 26 25 29 29 N 1.36037 * 124.95038 * 124.99798 * 21 3 2 30 30 H 0.97006 * 126.34815 * 359.93776 * 29 21 3 31 31 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 32 32 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 33 33 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 34 34 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 35 35 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 36 36 H 0.97002 * 120.00410 * 264.99761 * 5 3 2 37 37 H 1.00903 * 111.00100 * 296.04472 * 10 8 6 38 38 H 1.00898 * 110.99844 * 59.99755 * 10 8 6 39 39 H 1.09003 * 109.47258 * 294.99266 * 11 8 6 40 40 H 1.08998 * 109.47691 * 54.99722 * 11 8 6 41 41 H 1.09003 * 109.46980 * 299.99956 * 12 11 8 42 42 H 1.08998 * 109.47155 * 59.99230 * 12 11 8 43 43 H 0.97003 * 120.00179 * 180.02562 * 16 15 13 44 44 H 1.07998 * 120.06421 * 0.32160 * 24 23 22 45 45 H 1.08004 * 119.66230 * 180.02562 * 25 24 23 46 46 H 1.07997 * 119.77636 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.15748 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4351 2.6643 -1.3671 7 8 -0.3396 2.6319 -0.4345 8 6 0.0366 3.3385 -2.6546 9 1 0.3966 2.7506 -3.4990 10 7 -1.4271 3.4437 -2.7197 11 6 0.6516 4.7384 -2.7088 12 6 0.3515 5.3750 -4.0673 13 6 0.9566 6.7541 -4.1205 14 1 1.5005 7.1383 -3.2703 15 6 0.8160 7.5255 -5.2547 16 7 0.1532 7.0578 -6.2899 17 14 1.5655 9.2352 -5.3203 18 1 3.0353 9.1388 -5.1321 19 1 1.2743 9.8531 -6.6389 20 1 0.9822 10.0731 -4.2419 21 6 3.5419 1.4444 0.1239 22 7 4.2119 0.8640 1.0762 23 6 5.5418 1.0586 0.8827 24 6 6.6852 0.6639 1.5824 25 6 7.9208 1.0298 1.1288 26 6 8.0549 1.7914 -0.0235 27 6 6.9409 2.1928 -0.7293 28 6 5.6770 1.8301 -0.2837 29 7 4.3944 2.0581 -0.7406 30 1 4.1469 2.5619 -1.5317 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.2720 2.1231 -1.9978 37 1 -1.8543 2.5301 -2.7505 38 1 -1.7854 3.9846 -1.9469 39 1 0.2244 5.3538 -1.9170 40 1 1.7305 4.6669 -2.5714 41 1 0.7785 4.7597 -4.8592 42 1 -0.7274 5.4465 -4.2047 43 1 0.0545 7.6003 -7.0880 44 1 6.5924 0.0704 2.4799 45 1 8.8022 0.7224 1.6721 46 1 9.0388 2.0722 -0.3693 47 1 7.0508 2.7858 -1.6252 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424159018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:40 Heat of formation + Delta-G solvation = 18.752377 kcal Electronic energy + Delta-G solvation = -27836.968935 eV Core-core repulsion = 24019.503078 eV Total energy + Delta-G solvation = -3817.465856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.51973 -40.21882 -37.81363 -36.13675 -35.16749 -33.60027 -32.89996 -32.37658 -30.27169 -30.18180 -29.98719 -27.40842 -26.10566 -23.76262 -22.97395 -22.47441 -21.98492 -20.89428 -20.64938 -19.99990 -18.42687 -17.57353 -17.23593 -16.46100 -16.30825 -15.91951 -15.48191 -15.43843 -15.01761 -14.68775 -14.51339 -14.33385 -14.16804 -13.97679 -13.59982 -13.31064 -13.02939 -12.40832 -12.32500 -12.12636 -12.03890 -11.88111 -11.76010 -11.74187 -11.56869 -11.10784 -10.95391 -10.94101 -10.76125 -10.64997 -10.28148 -10.22833 -9.90467 -9.48325 -9.38988 -9.09584 -8.65939 -8.46351 -8.39199 -8.30177 -6.00942 -4.03761 0.65640 1.24486 2.42293 2.45719 2.56453 2.85826 3.30469 3.35834 3.37807 3.60761 3.81161 4.23395 4.43321 4.63633 4.68058 4.73091 4.78180 4.86608 4.94804 5.07264 5.08699 5.16811 5.27770 5.34323 5.38553 5.41105 5.46390 5.64250 5.68074 5.76318 5.83719 5.91217 6.05326 6.18724 6.23216 6.24463 6.27208 6.29041 6.51986 6.58772 6.94658 6.96310 7.14771 7.38372 7.56153 7.66672 7.69131 7.86901 8.04341 8.08192 8.39796 9.03976 9.59907 11.09779 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009653 B = 0.003152 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.027538 B = 8880.794255 C =11451.962702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C 0.224 3.776 4 H 0.119 0.881 5 N -0.735 5.735 6 C 0.490 3.510 7 O -0.535 6.535 8 C 0.079 3.921 9 H 0.098 0.902 10 N -0.805 5.805 11 C -0.095 4.095 12 C 0.032 3.968 13 C -0.526 4.526 14 H 0.051 0.949 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.283 3.717 22 N -0.482 5.482 23 C 0.048 3.952 24 C -0.065 4.065 25 C -0.128 4.128 26 C -0.103 4.103 27 C -0.108 4.108 28 C 0.049 3.951 29 N -0.594 5.594 30 H 0.424 0.576 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.397 0.603 37 H 0.335 0.665 38 H 0.349 0.651 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.013 0.987 42 H 0.036 0.964 43 H 0.261 0.739 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.280 -16.045 12.166 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C 0.117 3.883 4 H 0.137 0.863 5 N -0.390 5.390 6 C 0.276 3.724 7 O -0.411 6.411 8 C -0.037 4.037 9 H 0.116 0.884 10 N -0.333 5.333 11 C -0.134 4.134 12 C -0.005 4.005 13 C -0.564 4.564 14 H 0.069 0.931 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.717 3.283 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.203 1.203 21 C 0.015 3.985 22 N -0.203 5.203 23 C -0.070 4.070 24 C -0.085 4.085 25 C -0.149 4.149 26 C -0.122 4.122 27 C -0.129 4.129 28 C -0.060 4.060 29 N -0.206 5.206 30 H 0.264 0.736 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.232 0.768 37 H 0.147 0.853 38 H 0.163 0.837 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.031 0.969 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.421 -16.096 12.684 22.990 hybrid contribution 1.101 1.222 -0.634 1.763 sum 11.522 -14.874 12.050 22.343 Atomic orbital electron populations 1.21799 0.93981 1.01027 1.03247 1.21885 0.97268 0.93589 1.03383 1.19444 0.83135 0.96028 0.89654 0.86314 1.46242 1.18211 1.59035 1.15488 1.22811 0.80537 0.76707 0.92363 1.90686 1.50972 1.58575 1.40894 1.21876 0.90786 0.99227 0.91787 0.88364 1.58977 1.02339 1.20504 1.51483 1.21668 0.97855 0.90697 1.03132 1.19008 0.98517 0.94180 0.88805 1.21220 1.34530 1.00724 0.99942 0.93084 1.24982 0.95368 0.98053 0.95812 1.69955 1.41228 1.37332 1.04534 0.86716 0.79581 0.84820 0.77198 1.20393 1.21267 1.20269 1.23557 0.94006 0.93426 0.87466 1.70308 1.02614 1.23885 1.23451 1.19080 0.91508 1.01118 0.95332 1.20021 0.89466 0.99637 0.99334 1.20667 0.96940 0.99931 0.97315 1.20912 0.97843 0.98205 0.95284 1.20053 0.88756 1.02693 1.01407 1.18909 0.86066 1.03032 0.98041 1.43030 1.04964 1.46629 1.25959 0.73608 0.91837 0.92427 0.93038 0.91697 0.89618 0.76826 0.85305 0.83651 0.92657 0.93157 0.96910 0.94575 0.92962 0.85320 0.85315 0.85162 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.51 37.16 0.32 -1.22 16 2 C -0.12 -1.23 5.57 -26.73 -0.15 -1.38 16 3 C 0.22 2.46 2.80 -69.08 -0.19 2.27 16 4 H 0.12 1.49 7.58 -51.93 -0.39 1.10 16 5 N -0.74 -7.86 4.91 -54.93 -0.27 -8.13 16 6 C 0.49 6.56 5.64 -10.98 -0.06 6.50 16 7 O -0.54 -8.31 13.39 5.56 0.07 -8.24 16 8 C 0.08 1.18 3.15 -68.87 -0.22 0.96 16 9 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 10 N -0.81 -12.32 8.44 -5.66 -0.05 -12.37 16 11 C -0.10 -1.77 4.78 -26.73 -0.13 -1.89 16 12 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 13 C -0.53 -14.37 9.11 -34.44 -0.31 -14.69 16 14 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 17 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.28 3.30 7.15 -154.83 -1.11 2.20 16 22 N -0.48 -6.37 11.13 -8.24 -0.09 -6.46 16 23 C 0.05 0.60 7.23 -84.70 -0.61 -0.01 16 24 C -0.07 -0.66 10.05 -39.61 -0.40 -1.06 16 25 C -0.13 -1.04 9.96 -39.97 -0.40 -1.44 16 26 C -0.10 -0.83 10.03 -39.52 -0.40 -1.23 16 27 C -0.11 -1.02 10.07 -39.50 -0.40 -1.42 16 28 C 0.05 0.56 7.31 -83.99 -0.61 -0.05 16 29 N -0.59 -6.23 5.94 -8.00 -0.05 -6.28 16 30 H 0.42 3.57 7.65 -40.82 -0.31 3.26 16 31 H 0.06 0.75 7.85 -51.93 -0.41 0.34 16 32 H 0.06 0.69 5.64 -51.93 -0.29 0.40 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.87 8.04 -51.93 -0.42 0.45 16 36 H 0.40 3.52 7.23 -40.82 -0.30 3.23 16 37 H 0.34 4.39 9.06 -39.29 -0.36 4.03 16 38 H 0.35 5.45 8.58 -39.29 -0.34 5.11 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.04 0.96 7.75 -51.93 -0.40 0.56 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 45 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 46 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 386.16 15.07 5.82 5.82 Total: -1.00 -32.73 386.16 -10.73 -43.47 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.98 Total: 11.70 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -4.90 Total: -10.25 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.28 Total: -58.76 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.07 Total: -8.24 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.73 -10.73 -43.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424159018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.222 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds