Wall clock time and date at job start Tue Mar 31 2020 15:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 6 6 C 1.34781 * 119.99874 * 85.00543 * 5 3 2 7 7 O 1.21278 * 120.00033 * 359.97438 * 6 5 3 8 8 C 1.50703 * 120.00101 * 179.97438 * 6 5 3 9 9 H 1.09003 * 109.46650 * 39.99617 * 8 6 5 10 10 N 1.46896 * 109.47223 * 159.99713 * 8 6 5 11 11 C 1.52994 * 109.46874 * 280.00079 * 8 6 5 12 12 C 1.53003 * 109.47209 * 175.00164 * 11 8 6 13 13 C 1.50699 * 109.47498 * 179.97438 * 12 11 8 14 14 H 1.07995 * 119.99653 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00081 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99845 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99994 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46713 * 60.00248 * 17 15 13 19 19 H 1.48498 * 109.47286 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47020 * 300.00436 * 17 15 13 21 21 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 22 22 N 1.30104 * 124.95342 * 304.69583 * 21 3 2 23 23 C 1.35782 * 109.64563 * 179.86762 * 22 21 3 24 24 C 1.39743 * 133.59693 * 180.11227 * 23 22 21 25 25 C 1.36612 * 119.88226 * 180.30273 * 24 23 22 26 26 C 1.38773 * 120.66879 * 359.97412 * 25 24 23 27 27 C 1.37857 * 120.45291 * 0.06630 * 26 25 24 28 28 C 1.38837 * 119.68902 * 359.91454 * 27 26 25 29 29 N 1.36037 * 124.95038 * 124.99798 * 21 3 2 30 30 H 0.97006 * 126.34815 * 359.93776 * 29 21 3 31 31 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 32 32 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 33 33 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 34 34 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 35 35 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 36 36 H 0.97002 * 120.00410 * 264.99761 * 5 3 2 37 37 H 1.00903 * 111.00100 * 296.04472 * 10 8 6 38 38 H 1.00898 * 110.99844 * 59.99755 * 10 8 6 39 39 H 1.09003 * 109.47258 * 294.99266 * 11 8 6 40 40 H 1.08998 * 109.47691 * 54.99722 * 11 8 6 41 41 H 1.09003 * 109.46980 * 299.99956 * 12 11 8 42 42 H 1.08998 * 109.47155 * 59.99230 * 12 11 8 43 43 H 0.97003 * 120.00179 * 180.02562 * 16 15 13 44 44 H 1.07998 * 120.06421 * 0.32160 * 24 23 22 45 45 H 1.08004 * 119.66230 * 180.02562 * 25 24 23 46 46 H 1.07997 * 119.77636 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.15748 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4351 2.6643 -1.3671 7 8 -0.3396 2.6319 -0.4345 8 6 0.0366 3.3385 -2.6546 9 1 0.3966 2.7506 -3.4990 10 7 -1.4271 3.4437 -2.7197 11 6 0.6516 4.7384 -2.7088 12 6 0.3515 5.3750 -4.0673 13 6 0.9566 6.7541 -4.1205 14 1 1.5005 7.1383 -3.2703 15 6 0.8160 7.5255 -5.2547 16 7 0.1532 7.0578 -6.2899 17 14 1.5655 9.2352 -5.3203 18 1 3.0353 9.1388 -5.1321 19 1 1.2743 9.8531 -6.6389 20 1 0.9822 10.0731 -4.2419 21 6 3.5419 1.4444 0.1239 22 7 4.2119 0.8640 1.0762 23 6 5.5418 1.0586 0.8827 24 6 6.6852 0.6639 1.5824 25 6 7.9208 1.0298 1.1288 26 6 8.0549 1.7914 -0.0235 27 6 6.9409 2.1928 -0.7293 28 6 5.6770 1.8301 -0.2837 29 7 4.3944 2.0581 -0.7406 30 1 4.1469 2.5619 -1.5317 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.2720 2.1231 -1.9978 37 1 -1.8543 2.5301 -2.7505 38 1 -1.7854 3.9846 -1.9469 39 1 0.2244 5.3538 -1.9170 40 1 1.7305 4.6669 -2.5714 41 1 0.7785 4.7597 -4.8592 42 1 -0.7274 5.4465 -4.2047 43 1 0.0545 7.6003 -7.0880 44 1 6.5924 0.0704 2.4799 45 1 8.8022 0.7224 1.6721 46 1 9.0388 2.0722 -0.3693 47 1 7.0508 2.7858 -1.6252 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424159018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:39 Heat of formation + Delta-G solvation = -3.802697 kcal Electronic energy + Delta-G solvation = -27837.946996 eV Core-core repulsion = 24019.503078 eV Total energy + Delta-G solvation = -3818.443918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.32935 -41.30809 -38.59603 -37.21224 -36.47987 -34.83189 -34.41918 -33.31226 -31.92819 -30.98720 -30.78808 -28.54428 -27.52630 -25.33244 -23.75144 -23.26666 -22.91182 -22.33064 -21.57550 -21.24586 -19.31629 -18.58291 -18.35682 -17.99540 -17.34513 -17.15502 -16.51684 -16.43944 -16.27359 -16.00700 -15.63435 -15.28491 -14.99618 -14.88003 -14.80546 -14.36647 -14.24048 -13.97394 -13.76996 -13.43606 -12.95885 -12.81815 -12.79347 -12.63863 -12.58244 -12.50095 -12.48607 -12.28983 -11.95615 -11.78771 -11.74452 -11.62380 -11.25791 -11.09681 -11.00008 -10.49197 -10.37941 -9.63466 -9.40393 -9.16106 -8.14620 -6.24613 -0.08869 0.52299 1.40547 1.43049 1.44141 1.50962 1.59290 1.65512 1.89143 2.43414 2.87420 2.98096 3.18760 3.46862 3.53118 3.74157 3.83384 3.96406 4.06670 4.11208 4.15677 4.30297 4.31009 4.36751 4.44216 4.48154 4.53465 4.75598 4.79165 4.81821 4.92920 4.96709 5.02489 5.09924 5.23152 5.24572 5.38803 5.42442 5.51015 5.56682 5.56896 5.84923 5.92173 5.98944 6.06143 6.19739 6.29688 6.30814 6.53556 6.72183 6.94654 7.02075 7.43672 8.96172 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009653 B = 0.003152 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.027538 B = 8880.794255 C =11451.962702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 C 0.233 3.767 4 H 0.103 0.897 5 N -0.720 5.720 6 C 0.500 3.500 7 O -0.555 6.555 8 C 0.087 3.913 9 H 0.112 0.888 10 N -0.818 5.818 11 C -0.083 4.083 12 C 0.040 3.960 13 C -0.544 4.544 14 H 0.055 0.945 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.955 3.045 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.276 3.724 22 N -0.506 5.506 23 C 0.014 3.986 24 C -0.082 4.082 25 C -0.121 4.121 26 C -0.097 4.097 27 C -0.120 4.120 28 C 0.034 3.966 29 N -0.589 5.589 30 H 0.432 0.568 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.409 0.591 37 H 0.348 0.652 38 H 0.346 0.654 39 H 0.043 0.957 40 H 0.068 0.932 41 H -0.004 1.004 42 H 0.005 0.995 43 H 0.262 0.738 44 H 0.136 0.864 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.660 -16.186 12.499 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C 0.126 3.874 4 H 0.121 0.879 5 N -0.374 5.374 6 C 0.285 3.715 7 O -0.432 6.432 8 C -0.029 4.029 9 H 0.130 0.870 10 N -0.347 5.347 11 C -0.121 4.121 12 C 0.002 3.998 13 C -0.582 4.582 14 H 0.073 0.927 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.781 3.219 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.198 1.198 21 C 0.008 3.992 22 N -0.228 5.228 23 C -0.104 4.104 24 C -0.102 4.102 25 C -0.141 4.141 26 C -0.116 4.116 27 C -0.141 4.141 28 C -0.076 4.076 29 N -0.202 5.202 30 H 0.273 0.727 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.245 0.755 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.014 0.986 42 H 0.024 0.976 43 H 0.071 0.929 44 H 0.154 0.846 45 H 0.177 0.823 46 H 0.179 0.821 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.831 -16.252 13.013 24.456 hybrid contribution 0.444 1.231 -0.715 1.492 sum 13.275 -15.021 12.298 23.518 Atomic orbital electron populations 1.21728 0.94272 1.01546 1.01927 1.21816 0.96759 0.92955 1.03799 1.19321 0.82975 0.96296 0.88824 0.87907 1.46019 1.17442 1.58039 1.15905 1.22316 0.81059 0.76814 0.91291 1.90692 1.51802 1.59522 1.41218 1.21652 0.90557 0.97407 0.93237 0.87009 1.58959 1.02715 1.21513 1.51526 1.21401 0.99208 0.92299 0.99181 1.18818 0.96090 0.93405 0.91438 1.21707 1.34356 1.02154 1.00011 0.92676 1.25856 0.95855 1.02188 0.95529 1.70086 1.42664 1.38953 1.05170 0.85654 0.79254 0.79840 0.77198 1.19060 1.21042 1.19770 1.23481 0.94000 0.93913 0.87789 1.70233 1.03460 1.24765 1.24292 1.19508 0.91725 1.02517 0.96617 1.20311 0.89714 1.00291 0.99847 1.21068 0.97158 0.98689 0.97191 1.21365 0.98801 0.96832 0.94624 1.20392 0.88351 1.03071 1.02276 1.19229 0.86842 1.03405 0.98133 1.42967 1.04721 1.46463 1.26004 0.72706 0.93217 0.93581 0.91607 0.90821 0.89600 0.75492 0.83864 0.83974 0.93853 0.91377 0.98603 0.97620 0.92946 0.84603 0.82272 0.82094 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.51 71.98 0.61 -2.26 16 2 C -0.11 -2.23 5.57 30.60 0.17 -2.06 16 3 C 0.23 5.02 2.80 44.25 0.12 5.15 16 4 H 0.10 2.61 7.58 -2.39 -0.02 2.59 16 5 N -0.72 -14.71 4.91 -446.09 -2.19 -16.90 16 6 C 0.50 13.03 5.64 87.66 0.49 13.53 16 7 O -0.55 -17.07 13.39 -3.02 -0.04 -17.11 16 8 C 0.09 2.55 3.15 44.17 0.14 2.69 16 9 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 10 N -0.82 -25.04 8.44 -171.81 -1.45 -26.49 16 11 C -0.08 -3.04 4.78 30.59 0.15 -2.89 16 12 C 0.04 1.96 4.86 29.85 0.15 2.10 16 13 C -0.54 -29.82 9.11 25.60 0.23 -29.59 16 14 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 15 C 0.00 0.21 5.46 84.66 0.46 0.67 16 16 N -0.93 -55.38 13.29 21.45 0.28 -55.10 16 17 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 C 0.28 6.36 7.15 137.92 0.99 7.35 16 22 N -0.51 -13.41 11.13 -179.97 -2.00 -15.41 16 23 C 0.01 0.35 7.23 39.45 0.29 0.63 16 24 C -0.08 -1.57 10.05 22.25 0.22 -1.35 16 25 C -0.12 -1.66 9.96 22.02 0.22 -1.44 16 26 C -0.10 -1.28 10.03 22.31 0.22 -1.05 16 27 C -0.12 -2.03 10.07 22.32 0.22 -1.80 16 28 C 0.03 0.74 7.31 38.86 0.28 1.02 16 29 N -0.59 -11.90 5.94 -179.24 -1.06 -12.96 16 30 H 0.43 6.79 7.65 -92.70 -0.71 6.08 16 31 H 0.05 1.17 7.85 -2.39 -0.02 1.15 16 32 H 0.05 1.07 5.64 -2.39 -0.01 1.05 16 33 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.71 8.04 -2.39 -0.02 1.69 16 36 H 0.41 6.64 7.23 -92.71 -0.67 5.97 16 37 H 0.35 8.99 9.06 -89.69 -0.81 8.18 16 38 H 0.35 10.93 8.58 -89.70 -0.77 10.16 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.01 0.30 7.75 -2.39 -0.02 0.28 16 43 H 0.26 14.79 8.31 -92.71 -0.77 14.01 16 44 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 45 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 46 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 47 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -71.28 386.16 -1.40 -72.68 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -1.93 Total: 35.15 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.97 Total: -9.30 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -6.42 Total: -126.87 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.04 Total: -17.11 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -71.28 -1.40 -72.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424159018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.879 kcal (2) G-P(sol) polarization free energy of solvation -71.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds