Wall clock time and date at job start Tue Mar 31 2020 15:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47034 * 2 1 4 4 H 1.08995 * 109.47501 * 304.99915 * 3 2 1 5 5 N 1.46501 * 109.47295 * 65.00199 * 3 2 1 6 6 C 1.34781 * 120.00070 * 275.00098 * 5 3 2 7 7 O 1.21278 * 119.99531 * 359.97438 * 6 5 3 8 8 C 1.50693 * 120.00261 * 180.02562 * 6 5 3 9 9 H 1.09005 * 109.47168 * 319.99959 * 8 6 5 10 10 N 1.46901 * 109.47231 * 199.99856 * 8 6 5 11 11 C 1.53006 * 109.47471 * 79.99562 * 8 6 5 12 12 C 1.52999 * 109.46997 * 185.00271 * 11 8 6 13 13 C 1.50706 * 109.46573 * 180.02562 * 12 11 8 14 14 H 1.07995 * 120.00167 * 359.72054 * 13 12 11 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99350 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00608 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47353 * 89.99430 * 17 15 13 19 19 H 1.48494 * 109.47031 * 209.99977 * 17 15 13 20 20 H 1.48504 * 109.46680 * 329.99678 * 17 15 13 21 21 C 1.50705 * 109.46972 * 184.99801 * 3 2 1 22 22 N 1.30104 * 124.94969 * 305.02375 * 21 3 2 23 23 C 1.35796 * 109.64163 * 179.97438 * 22 21 3 24 24 C 1.39741 * 133.60109 * 180.02562 * 23 22 21 25 25 C 1.36601 * 119.87917 * 179.97438 * 24 23 22 26 26 C 1.38779 * 120.67631 * 359.97377 * 25 24 23 27 27 C 1.37856 * 120.44899 * 0.04953 * 26 25 24 28 28 C 1.38831 * 119.68569 * 359.95059 * 27 26 25 29 29 N 1.36035 * 124.94661 * 124.72450 * 21 3 2 30 30 H 0.97001 * 126.35065 * 359.97438 * 29 21 3 31 31 H 1.08997 * 109.47055 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47078 * 300.00097 * 1 2 3 33 33 H 1.08992 * 109.47199 * 59.99893 * 1 2 3 34 34 H 1.09001 * 109.47078 * 239.99903 * 2 1 3 35 35 H 1.08998 * 109.46888 * 119.99797 * 2 1 3 36 36 H 0.97005 * 120.00288 * 94.99422 * 5 3 2 37 37 H 1.00899 * 110.99814 * 176.04311 * 10 8 6 38 38 H 1.00892 * 110.99802 * 299.99727 * 10 8 6 39 39 H 1.09000 * 109.46866 * 65.00059 * 11 8 6 40 40 H 1.09001 * 109.46611 * 305.00176 * 11 8 6 41 41 H 1.09000 * 109.47486 * 60.00167 * 12 11 8 42 42 H 1.09001 * 109.47362 * 299.99445 * 12 11 8 43 43 H 0.97005 * 119.99656 * 180.02562 * 16 15 13 44 44 H 1.07992 * 120.06086 * 359.97404 * 24 23 22 45 45 H 1.08004 * 119.66320 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.77424 * 180.02562 * 26 25 24 47 47 H 1.07996 * 120.15804 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4351 2.6644 1.3670 7 8 -0.3392 2.6326 0.4342 8 6 0.0367 3.3386 2.6545 9 1 0.3966 2.7508 3.4990 10 7 -1.4271 3.4439 2.7195 11 6 0.6517 4.7386 2.7087 12 6 0.3516 5.3752 4.0672 13 6 0.9568 6.7544 4.1202 14 1 1.5048 7.1366 3.2718 15 6 0.8153 7.5261 5.2540 16 7 1.3438 8.7294 5.3005 17 14 -0.1260 6.8620 6.7245 18 1 0.8095 6.1466 7.6291 19 1 -0.7588 7.9882 7.4568 20 1 -1.1770 5.9231 6.2564 21 6 3.5420 1.4442 -0.1238 22 7 4.3558 0.8080 0.6672 23 6 5.6372 1.0233 0.2728 24 6 6.8778 0.5930 0.7507 25 6 8.0240 0.9897 0.1223 26 6 7.9714 1.8178 -0.9901 27 6 6.7587 2.2550 -1.4788 28 6 5.5833 1.8621 -0.8531 29 7 4.2440 2.1067 -1.0823 30 1 3.8726 2.6511 -1.7941 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.2720 2.1231 1.9979 37 1 -1.7227 3.8341 3.6018 38 1 -1.7853 3.9847 1.9468 39 1 0.2246 5.3539 1.9167 40 1 1.7306 4.6670 2.5713 41 1 0.7787 4.7599 4.8591 42 1 -0.7274 5.4468 4.2045 43 1 1.2446 9.2722 6.0983 44 1 6.9304 -0.0519 1.6153 45 1 8.9810 0.6553 0.4949 46 1 8.8867 2.1222 -1.4759 47 1 6.7233 2.8997 -2.3445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424159019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:43 Heat of formation + Delta-G solvation = 19.297220 kcal Electronic energy + Delta-G solvation = -27810.635521 eV Core-core repulsion = 23993.193290 eV Total energy + Delta-G solvation = -3817.442230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.47979 -40.01942 -37.77478 -36.20973 -35.27993 -33.42585 -32.84547 -32.33363 -30.34030 -30.30985 -29.93835 -27.51946 -26.30088 -23.75283 -22.92626 -22.51224 -21.97564 -20.81590 -20.39453 -19.97442 -18.27608 -17.65586 -17.26425 -16.69919 -16.58525 -15.63868 -15.51626 -15.14463 -14.73249 -14.58589 -14.39291 -14.24813 -14.17671 -13.90812 -13.73397 -13.14197 -12.98384 -12.69900 -12.63544 -12.26077 -12.17271 -11.86611 -11.84049 -11.70277 -11.53914 -11.41275 -11.01427 -10.98597 -10.92206 -10.37714 -10.25774 -10.10042 -9.90264 -9.48593 -9.33231 -9.14458 -8.67776 -8.63239 -8.43131 -8.33857 -6.12937 -4.12613 0.63115 1.24845 2.31049 2.51030 2.76975 3.24748 3.28207 3.32985 3.33984 3.62533 3.70459 4.21384 4.36765 4.61248 4.73212 4.75475 4.82716 4.95701 5.02302 5.06718 5.11099 5.17095 5.20175 5.31485 5.42683 5.43771 5.48480 5.57371 5.71590 5.78138 5.89940 6.05712 6.11008 6.12278 6.23797 6.24327 6.28729 6.33477 6.42269 6.58963 6.62898 6.97325 7.07186 7.19602 7.28464 7.54316 7.57130 7.65171 7.75337 8.30046 8.42965 8.90618 9.48264 11.00286 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010287 B = 0.003072 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.244120 B = 9111.080030 C =11067.158542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.230 3.770 4 H 0.103 0.897 5 N -0.723 5.723 6 C 0.531 3.469 7 O -0.529 6.529 8 C 0.072 3.928 9 H 0.098 0.902 10 N -0.829 5.829 11 C -0.129 4.129 12 C -0.010 4.010 13 C -0.524 4.524 14 H 0.070 0.930 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.882 3.118 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C 0.276 3.724 22 N -0.474 5.474 23 C 0.046 3.954 24 C -0.061 4.061 25 C -0.129 4.129 26 C -0.100 4.100 27 C -0.112 4.112 28 C 0.051 3.949 29 N -0.591 5.591 30 H 0.424 0.576 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.409 0.591 37 H 0.351 0.649 38 H 0.348 0.652 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.014 0.986 42 H 0.017 0.983 43 H 0.264 0.736 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.823 -18.147 -13.820 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.123 3.877 4 H 0.121 0.879 5 N -0.378 5.378 6 C 0.318 3.682 7 O -0.404 6.404 8 C -0.043 4.043 9 H 0.116 0.884 10 N -0.361 5.361 11 C -0.169 4.169 12 C -0.048 4.048 13 C -0.562 4.562 14 H 0.088 0.912 15 C -0.135 4.135 16 N -0.539 5.539 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 C 0.008 3.992 22 N -0.194 5.194 23 C -0.073 4.073 24 C -0.080 4.080 25 C -0.150 4.150 26 C -0.120 4.120 27 C -0.133 4.133 28 C -0.060 4.060 29 N -0.202 5.202 30 H 0.263 0.737 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.244 0.756 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.033 0.967 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.062 -19.330 -13.723 25.040 hybrid contribution 0.297 1.765 0.223 1.804 sum 8.358 -17.565 -13.500 23.678 Atomic orbital electron populations 1.21826 0.93783 1.01015 1.03678 1.21877 0.97324 0.93682 1.03263 1.19247 0.82725 0.95928 0.89797 0.87901 1.46017 1.17655 1.58444 1.15658 1.20768 0.80424 0.76764 0.90211 1.90655 1.50786 1.58421 1.40573 1.21505 0.90789 0.97383 0.94606 0.88386 1.58734 1.07286 1.61156 1.08950 1.22200 1.00629 0.92846 1.01208 1.19572 0.96683 0.96739 0.91787 1.21056 1.34855 0.98155 1.02159 0.91165 1.25048 0.95153 0.94690 0.98570 1.69914 1.45121 1.09767 1.29120 0.86751 0.80715 0.78767 0.82864 1.20222 1.21339 1.18936 1.23533 0.95632 0.92714 0.87316 1.70377 0.99354 1.23281 1.26385 1.19105 0.92458 1.00262 0.95430 1.20059 0.88903 0.99357 0.99710 1.20675 0.98059 0.99540 0.96696 1.20915 0.96726 0.97690 0.96656 1.19989 0.89431 1.02735 1.01099 1.18914 0.84725 1.02474 0.99860 1.43045 1.05074 1.43778 1.28298 0.73654 0.93193 0.91502 0.92200 0.91320 0.90276 0.75581 0.83376 0.83876 0.92060 0.92052 0.96740 0.96532 0.92621 0.85194 0.85260 0.85197 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.52 37.16 0.32 -1.35 16 2 C -0.12 -1.27 5.55 -26.73 -0.15 -1.42 16 3 C 0.23 2.53 2.80 -69.08 -0.19 2.34 16 4 H 0.10 1.12 7.58 -51.93 -0.39 0.72 16 5 N -0.72 -8.96 5.02 -54.94 -0.28 -9.23 16 6 C 0.53 7.79 5.65 -10.99 -0.06 7.73 16 7 O -0.53 -8.72 13.39 5.56 0.07 -8.65 16 8 C 0.07 1.12 3.21 -68.86 -0.22 0.90 16 9 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 10 N -0.83 -12.76 8.94 -5.65 -0.05 -12.81 16 11 C -0.13 -2.38 4.78 -26.73 -0.13 -2.51 16 12 C -0.01 -0.23 3.81 -27.88 -0.11 -0.34 16 13 C -0.52 -14.53 9.66 -34.44 -0.33 -14.87 16 14 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 15 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 17 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 21 C 0.28 3.15 6.81 -154.83 -1.05 2.10 16 22 N -0.47 -6.17 11.21 -8.23 -0.09 -6.26 16 23 C 0.05 0.57 7.23 -84.70 -0.61 -0.04 16 24 C -0.06 -0.63 10.05 -39.61 -0.40 -1.03 16 25 C -0.13 -1.07 9.96 -39.97 -0.40 -1.47 16 26 C -0.10 -0.79 10.03 -39.52 -0.40 -1.19 16 27 C -0.11 -1.00 10.07 -39.50 -0.40 -1.39 16 28 C 0.05 0.56 7.31 -83.99 -0.61 -0.06 16 29 N -0.59 -5.87 6.23 -8.00 -0.05 -5.92 16 30 H 0.42 3.01 8.96 -40.82 -0.37 2.65 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.91 5.65 -51.93 -0.29 0.62 16 33 H 0.06 0.72 7.85 -51.93 -0.41 0.31 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.41 4.95 8.59 -40.82 -0.35 4.60 16 37 H 0.35 5.34 7.55 -39.29 -0.30 5.04 16 38 H 0.35 5.42 8.58 -39.30 -0.34 5.08 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 42 H 0.02 0.36 5.93 -51.93 -0.31 0.05 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 44 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 46 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -33.13 383.50 -10.31 -43.45 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -6.96 Total: 14.61 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -4.84 Total: -10.78 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.31 Total: -60.85 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.07 Total: -8.65 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.13 -10.31 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424159019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.744 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds