Wall clock time and date at job start Tue Mar 31 2020 15:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47034 * 2 1 4 4 H 1.08995 * 109.47501 * 304.99915 * 3 2 1 5 5 N 1.46501 * 109.47295 * 65.00199 * 3 2 1 6 6 C 1.34781 * 120.00070 * 275.00098 * 5 3 2 7 7 O 1.21278 * 119.99531 * 359.97438 * 6 5 3 8 8 C 1.50693 * 120.00261 * 180.02562 * 6 5 3 9 9 H 1.09005 * 109.47168 * 319.99959 * 8 6 5 10 10 N 1.46901 * 109.47231 * 199.99856 * 8 6 5 11 11 C 1.53006 * 109.47471 * 79.99562 * 8 6 5 12 12 C 1.52999 * 109.46997 * 185.00271 * 11 8 6 13 13 C 1.50706 * 109.46573 * 180.02562 * 12 11 8 14 14 H 1.07995 * 120.00167 * 359.72054 * 13 12 11 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99350 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00608 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47353 * 89.99430 * 17 15 13 19 19 H 1.48494 * 109.47031 * 209.99977 * 17 15 13 20 20 H 1.48504 * 109.46680 * 329.99678 * 17 15 13 21 21 C 1.50705 * 109.46972 * 184.99801 * 3 2 1 22 22 N 1.30104 * 124.94969 * 305.02375 * 21 3 2 23 23 C 1.35796 * 109.64163 * 179.97438 * 22 21 3 24 24 C 1.39741 * 133.60109 * 180.02562 * 23 22 21 25 25 C 1.36601 * 119.87917 * 179.97438 * 24 23 22 26 26 C 1.38779 * 120.67631 * 359.97377 * 25 24 23 27 27 C 1.37856 * 120.44899 * 0.04953 * 26 25 24 28 28 C 1.38831 * 119.68569 * 359.95059 * 27 26 25 29 29 N 1.36035 * 124.94661 * 124.72450 * 21 3 2 30 30 H 0.97001 * 126.35065 * 359.97438 * 29 21 3 31 31 H 1.08997 * 109.47055 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47078 * 300.00097 * 1 2 3 33 33 H 1.08992 * 109.47199 * 59.99893 * 1 2 3 34 34 H 1.09001 * 109.47078 * 239.99903 * 2 1 3 35 35 H 1.08998 * 109.46888 * 119.99797 * 2 1 3 36 36 H 0.97005 * 120.00288 * 94.99422 * 5 3 2 37 37 H 1.00899 * 110.99814 * 176.04311 * 10 8 6 38 38 H 1.00892 * 110.99802 * 299.99727 * 10 8 6 39 39 H 1.09000 * 109.46866 * 65.00059 * 11 8 6 40 40 H 1.09001 * 109.46611 * 305.00176 * 11 8 6 41 41 H 1.09000 * 109.47486 * 60.00167 * 12 11 8 42 42 H 1.09001 * 109.47362 * 299.99445 * 12 11 8 43 43 H 0.97005 * 119.99656 * 180.02562 * 16 15 13 44 44 H 1.07992 * 120.06086 * 359.97404 * 24 23 22 45 45 H 1.08004 * 119.66320 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.77424 * 180.02562 * 26 25 24 47 47 H 1.07996 * 120.15804 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4351 2.6644 1.3670 7 8 -0.3392 2.6326 0.4342 8 6 0.0367 3.3386 2.6545 9 1 0.3966 2.7508 3.4990 10 7 -1.4271 3.4439 2.7195 11 6 0.6517 4.7386 2.7087 12 6 0.3516 5.3752 4.0672 13 6 0.9568 6.7544 4.1202 14 1 1.5048 7.1366 3.2718 15 6 0.8153 7.5261 5.2540 16 7 1.3438 8.7294 5.3005 17 14 -0.1260 6.8620 6.7245 18 1 0.8095 6.1466 7.6291 19 1 -0.7588 7.9882 7.4568 20 1 -1.1770 5.9231 6.2564 21 6 3.5420 1.4442 -0.1238 22 7 4.3558 0.8080 0.6672 23 6 5.6372 1.0233 0.2728 24 6 6.8778 0.5930 0.7507 25 6 8.0240 0.9897 0.1223 26 6 7.9714 1.8178 -0.9901 27 6 6.7587 2.2550 -1.4788 28 6 5.5833 1.8621 -0.8531 29 7 4.2440 2.1067 -1.0823 30 1 3.8726 2.6511 -1.7941 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.2720 2.1231 1.9979 37 1 -1.7227 3.8341 3.6018 38 1 -1.7853 3.9847 1.9468 39 1 0.2246 5.3539 1.9167 40 1 1.7306 4.6670 2.5713 41 1 0.7787 4.7599 4.8591 42 1 -0.7274 5.4468 4.2045 43 1 1.2446 9.2722 6.0983 44 1 6.9304 -0.0519 1.6153 45 1 8.9810 0.6553 0.4949 46 1 8.8867 2.1222 -1.4759 47 1 6.7233 2.8997 -2.3445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424159019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:42 Heat of formation + Delta-G solvation = -4.815700 kcal Electronic energy + Delta-G solvation = -27811.681135 eV Core-core repulsion = 23993.193290 eV Total energy + Delta-G solvation = -3818.487845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.26991 -41.15733 -38.55343 -37.40956 -36.49133 -34.82382 -34.21768 -33.35375 -32.08226 -31.03686 -30.73414 -28.72234 -27.57461 -25.32725 -23.68808 -23.27243 -22.83421 -22.30488 -21.40347 -21.21948 -19.28165 -18.91866 -18.44594 -18.06952 -17.52799 -16.58516 -16.49928 -16.25468 -16.11528 -15.79743 -15.63410 -15.30842 -15.15418 -14.85618 -14.83838 -14.66756 -14.42552 -14.09238 -13.65229 -13.49775 -13.08988 -12.96275 -12.87784 -12.70349 -12.56493 -12.48198 -12.45461 -12.07616 -11.88030 -11.83899 -11.79462 -11.70318 -11.42604 -11.08010 -10.78836 -10.77741 -10.19515 -9.65435 -9.41257 -9.16684 -8.31525 -6.37138 -0.11013 0.53099 1.37595 1.39112 1.44946 1.50473 1.59896 1.74329 2.29129 2.35078 2.87784 2.89317 3.04229 3.45608 3.70347 3.72695 3.84752 3.96469 4.09288 4.10273 4.16606 4.18166 4.31180 4.39553 4.48022 4.48655 4.54784 4.57527 4.71551 4.81242 4.88254 4.92962 5.01813 5.10622 5.14545 5.32645 5.34796 5.41535 5.45150 5.48477 5.51701 5.57287 5.61126 5.92775 6.06035 6.23029 6.26750 6.43690 6.50701 6.71229 6.75057 7.16138 7.27772 8.85278 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010287 B = 0.003072 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.244120 B = 9111.080030 C =11067.158542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C 0.234 3.766 4 H 0.106 0.894 5 N -0.714 5.714 6 C 0.534 3.466 7 O -0.548 6.548 8 C 0.081 3.919 9 H 0.115 0.885 10 N -0.826 5.826 11 C -0.117 4.117 12 C -0.006 4.006 13 C -0.535 4.535 14 H 0.025 0.975 15 C 0.002 3.998 16 N -0.953 5.953 17 Si 0.954 3.046 18 H -0.267 1.267 19 H -0.288 1.288 20 H -0.236 1.236 21 C 0.269 3.731 22 N -0.497 5.497 23 C 0.010 3.990 24 C -0.082 4.082 25 C -0.124 4.124 26 C -0.096 4.096 27 C -0.120 4.120 28 C 0.036 3.964 29 N -0.584 5.584 30 H 0.435 0.565 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.411 0.589 37 H 0.354 0.646 38 H 0.347 0.653 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.027 0.973 42 H 0.028 0.972 43 H 0.266 0.734 44 H 0.134 0.866 45 H 0.157 0.843 46 H 0.162 0.838 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.202 -19.977 -13.823 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C 0.127 3.873 4 H 0.124 0.876 5 N -0.368 5.368 6 C 0.321 3.679 7 O -0.425 6.425 8 C -0.035 4.035 9 H 0.132 0.868 10 N -0.358 5.358 11 C -0.157 4.157 12 C -0.044 4.044 13 C -0.573 4.573 14 H 0.043 0.957 15 C -0.195 4.195 16 N -0.593 5.593 17 Si 0.777 3.223 18 H -0.192 1.192 19 H -0.215 1.215 20 H -0.159 1.159 21 C 0.000 4.000 22 N -0.218 5.218 23 C -0.108 4.108 24 C -0.101 4.101 25 C -0.144 4.144 26 C -0.116 4.116 27 C -0.141 4.141 28 C -0.074 4.074 29 N -0.197 5.197 30 H 0.276 0.724 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.247 0.753 37 H 0.169 0.831 38 H 0.160 0.840 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.047 0.953 43 H 0.075 0.925 44 H 0.152 0.848 45 H 0.175 0.825 46 H 0.180 0.820 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.451 -21.182 -13.755 26.633 hybrid contribution 0.341 2.373 0.123 2.400 sum 8.792 -18.810 -13.632 24.838 Atomic orbital electron populations 1.21736 0.94295 1.01396 1.02166 1.21800 0.96581 0.93215 1.03699 1.19295 0.82752 0.96228 0.89025 0.87648 1.45939 1.16852 1.57692 1.16303 1.20550 0.80862 0.76882 0.89593 1.90651 1.51484 1.59374 1.40958 1.21412 0.90685 0.95535 0.95852 0.86764 1.58749 1.06949 1.61032 1.09061 1.22007 1.00540 0.94496 0.98675 1.19503 0.96818 0.93894 0.94164 1.21439 1.34364 1.00811 1.00728 0.95673 1.26090 0.96327 0.94807 1.02247 1.70084 1.47261 1.11632 1.30347 0.85604 0.79866 0.78518 0.78339 1.19199 1.21455 1.15912 1.23447 0.95501 0.93196 0.87807 1.70299 1.00057 1.24144 1.27279 1.19528 0.92836 1.01717 0.96705 1.20319 0.89076 1.00217 1.00520 1.21065 0.98498 0.98596 0.96277 1.21376 0.97580 0.96479 0.96131 1.20375 0.89048 1.02945 1.01710 1.19241 0.85499 1.02712 0.99987 1.42994 1.04839 1.43550 1.28276 0.72354 0.91879 0.93666 0.92905 0.89924 0.90748 0.75332 0.83083 0.84008 0.93568 0.92505 0.95475 0.95343 0.92515 0.84822 0.82498 0.82026 0.83703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.52 71.98 0.61 -2.43 16 2 C -0.11 -2.26 5.55 30.59 0.17 -2.09 16 3 C 0.23 5.03 2.80 44.24 0.12 5.15 16 4 H 0.11 2.23 7.58 -2.39 -0.02 2.21 16 5 N -0.71 -17.31 5.02 -446.11 -2.24 -19.55 16 6 C 0.53 15.27 5.65 87.65 0.49 15.77 16 7 O -0.55 -17.73 13.39 -3.02 -0.04 -17.77 16 8 C 0.08 2.38 3.21 44.17 0.14 2.52 16 9 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 10 N -0.83 -24.07 8.94 -171.79 -1.54 -25.60 16 11 C -0.12 -4.29 4.78 30.60 0.15 -4.14 16 12 C -0.01 -0.27 3.81 29.85 0.11 -0.16 16 13 C -0.54 -30.23 9.66 25.60 0.25 -29.98 16 14 H 0.02 1.59 7.99 -2.91 -0.02 1.56 16 15 C 0.00 0.11 5.47 84.66 0.46 0.58 16 16 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 17 Si 0.95 42.81 27.47 68.60 1.88 44.70 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 20 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 21 C 0.27 6.07 6.81 137.93 0.94 7.01 16 22 N -0.50 -12.98 11.21 -179.96 -2.02 -15.00 16 23 C 0.01 0.25 7.23 39.45 0.29 0.54 16 24 C -0.08 -1.65 10.05 22.25 0.22 -1.42 16 25 C -0.12 -1.81 9.96 22.02 0.22 -1.59 16 26 C -0.10 -1.27 10.03 22.31 0.22 -1.04 16 27 C -0.12 -1.93 10.07 22.32 0.22 -1.70 16 28 C 0.04 0.77 7.31 38.86 0.28 1.05 16 29 N -0.58 -11.35 6.23 -179.23 -1.12 -12.47 16 30 H 0.44 5.93 8.96 -92.71 -0.83 5.10 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.19 5.65 -2.39 -0.01 1.18 16 33 H 0.05 1.22 7.85 -2.39 -0.02 1.20 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.41 9.75 8.59 -92.70 -0.80 8.95 16 37 H 0.35 9.93 7.55 -89.69 -0.68 9.25 16 38 H 0.35 10.41 8.58 -89.70 -0.77 9.64 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.03 1.12 7.57 -2.39 -0.02 1.10 16 42 H 0.03 1.18 5.93 -2.39 -0.01 1.16 16 43 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 44 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 45 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 46 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 47 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -73.33 383.50 -1.95 -75.28 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -2.10 Total: 41.58 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 4.91 Total: -11.95 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -6.61 Total: -131.84 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.04 Total: -17.77 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.70 kcal Total: -73.33 -1.95 -75.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424159019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.469 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds