Wall clock time and date at job start Tue Mar 31 2020 15:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47071 * 2 1 4 4 H 1.09003 * 109.47074 * 305.00752 * 3 2 1 5 5 C 1.50697 * 109.47263 * 185.00420 * 3 2 1 6 6 H 1.08000 * 119.99820 * 240.00027 * 5 3 2 7 7 C 1.37874 * 120.00252 * 59.99766 * 5 3 2 8 8 N 1.31513 * 119.99771 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00040 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47266 * 60.00034 * 9 7 5 11 11 H 1.48500 * 109.47162 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47367 * 299.99938 * 9 7 5 13 13 N 1.46501 * 109.46942 * 65.00081 * 3 2 1 14 14 C 1.34780 * 120.00241 * 275.00209 * 13 3 2 15 15 O 1.21586 * 119.99482 * 0.02562 * 14 13 3 16 16 N 1.34767 * 120.00202 * 180.02562 * 14 13 3 17 17 C 1.39636 * 120.00085 * 174.37825 * 16 14 13 18 18 C 1.38767 * 120.08540 * 335.16006 * 17 16 14 19 19 C 1.38005 * 120.15733 * 180.02562 * 18 17 16 20 20 C 1.50706 * 119.83309 * 179.97438 * 19 18 17 21 21 C 1.39119 * 120.33947 * 359.95073 * 19 18 17 22 22 N 1.39939 * 119.91610 * 180.02562 * 21 19 18 23 23 C 1.46891 * 111.00326 * 120.00137 * 22 21 19 24 24 C 1.46903 * 110.99696 * 243.95811 * 22 21 19 25 25 C 1.38444 * 120.17288 * 0.02888 * 21 19 18 26 26 C 1.39691 * 119.83344 * 359.73947 * 25 21 19 27 27 C 1.43205 * 120.16477 * 180.25018 * 26 25 21 28 28 N 7.11838 * 71.79110 * 62.03884 * 2 1 3 29 29 H 1.09003 * 109.46652 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47570 * 60.00262 * 1 2 3 31 31 H 1.09003 * 109.47334 * 299.99786 * 1 2 3 32 32 H 1.08995 * 109.47570 * 119.99738 * 2 1 3 33 33 H 1.09003 * 109.47334 * 240.00214 * 2 1 3 34 34 H 0.97003 * 119.99647 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99944 * 95.00309 * 13 3 2 36 36 H 0.97001 * 120.00325 * 354.36805 * 16 14 13 37 37 H 1.08002 * 119.92235 * 0.02562 * 18 17 16 38 38 H 1.09000 * 109.47291 * 89.99173 * 20 19 18 39 39 H 1.09003 * 109.47401 * 209.99611 * 20 19 18 40 40 H 1.08996 * 109.46855 * 329.99667 * 20 19 18 41 41 H 1.08995 * 109.47546 * 59.99591 * 23 22 21 42 42 H 1.09005 * 109.47328 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.47279 * 299.99799 * 23 22 21 44 44 H 1.08997 * 109.47650 * 59.99593 * 24 22 21 45 45 H 1.09002 * 109.46796 * 179.97438 * 24 22 21 46 46 H 1.09002 * 109.47074 * 299.99252 * 24 22 21 47 47 H 1.07997 * 120.08285 * 179.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4060 0.3376 -2.1733 9 14 6.0048 0.8802 -1.3813 10 1 6.5966 0.1455 -0.2345 11 1 6.3976 0.2170 -2.6505 12 1 6.5003 2.2802 -1.3810 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3671 15 8 -0.3417 2.6317 0.4322 16 7 0.0787 3.2673 2.5185 17 6 -1.1334 3.9557 2.6001 18 6 -1.7206 4.4689 1.4522 19 6 -2.9183 5.1500 1.5312 20 6 -3.5492 5.7048 0.2801 21 6 -3.5465 5.3267 2.7599 22 7 -4.7610 6.0183 2.8297 23 6 -5.8221 5.1646 3.3802 24 6 -4.6194 7.2531 3.6127 25 6 -2.9732 4.8201 3.9137 26 6 -1.7635 4.1253 3.8415 27 6 -1.1669 3.5937 5.0299 28 7 -0.6944 3.1705 5.9726 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8291 -0.0602 -2.9503 35 1 2.2719 2.1232 1.9978 36 1 0.6641 3.2229 3.2906 37 1 -1.2392 4.3350 0.4948 38 1 -4.2115 4.9566 -0.1554 39 1 -4.1229 6.5979 0.5277 40 1 -2.7694 5.9610 -0.4371 41 1 -5.5453 4.8424 4.3839 42 1 -6.7551 5.7267 3.4230 43 1 -5.9537 4.2911 2.7416 44 1 -3.8764 7.8979 3.1433 45 1 -5.5776 7.7712 3.6506 46 1 -4.2989 7.0067 4.6250 47 1 -3.4619 4.9585 4.8668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436497918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:14 Heat of formation + Delta-G solvation = 36.701238 kcal Electronic energy + Delta-G solvation = -28247.983925 eV Core-core repulsion = 24431.296390 eV Total energy + Delta-G solvation = -3816.687535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.85338 -39.50408 -37.45670 -36.30238 -35.26097 -34.27449 -32.70592 -32.41404 -30.94368 -29.00465 -27.84518 -27.60363 -26.92660 -24.77649 -23.19057 -22.39371 -21.99967 -20.61541 -19.65140 -18.88967 -18.27539 -17.07185 -16.27253 -15.95698 -15.69210 -15.30822 -15.19667 -14.95207 -14.43955 -14.28613 -13.97812 -13.86981 -13.52024 -13.35990 -13.28149 -13.00020 -12.73212 -12.67520 -12.59347 -12.57927 -12.12923 -11.96031 -11.85219 -11.70128 -11.57370 -11.45443 -11.29417 -11.02483 -10.87228 -10.37132 -10.27790 -10.20739 -9.66302 -9.48869 -9.11266 -8.82831 -8.74791 -8.56339 -8.12797 -7.81303 -6.17777 -4.27460 0.68755 1.17767 2.52299 2.82556 2.91778 3.22664 3.28390 3.29949 3.48485 3.62317 3.80208 3.89925 4.27312 4.60974 4.69799 4.88408 4.91522 5.04693 5.14073 5.16622 5.22839 5.23053 5.41736 5.53337 5.60046 5.63594 5.76684 5.80388 5.83284 6.00825 6.15493 6.31188 6.36397 6.42840 6.55163 6.59823 6.61135 6.85009 6.87972 7.04167 7.17261 7.23465 7.28158 7.35185 7.38399 7.58560 7.77333 7.86539 8.11906 8.60480 8.73124 9.06921 9.39976 10.87490 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.002810 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.771544 B = 9962.633488 C =10536.805408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C 0.287 3.713 4 H 0.053 0.947 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.713 5.713 14 C 0.693 3.307 15 O -0.566 6.566 16 N -0.692 5.692 17 C 0.244 3.756 18 C -0.133 4.133 19 C -0.004 4.004 20 C -0.109 4.109 21 C 0.045 3.955 22 N -0.500 5.500 23 C 0.026 3.974 24 C 0.025 3.975 25 C -0.073 4.073 26 C -0.082 4.082 27 C 0.258 3.742 28 N -0.425 5.425 29 H 0.022 0.978 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.101 0.899 34 H 0.266 0.734 35 H 0.387 0.613 36 H 0.403 0.597 37 H 0.167 0.833 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.029 0.971 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.029 0.971 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 11.676 9.405 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.169 4.169 3 C 0.185 3.815 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.364 5.364 14 C 0.393 3.607 15 O -0.443 6.443 16 N -0.336 5.336 17 C 0.142 3.858 18 C -0.155 4.155 19 C -0.006 4.006 20 C -0.165 4.165 21 C -0.050 4.050 22 N -0.220 5.220 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.096 4.096 26 C -0.090 4.090 27 C -0.056 4.056 28 N -0.101 5.101 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.219 0.781 36 H 0.238 0.762 37 H 0.184 0.816 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.048 0.952 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.180 10.937 9.237 20.866 hybrid contribution 1.648 -0.277 1.363 2.156 sum -13.533 10.660 10.600 20.227 Atomic orbital electron populations 1.21819 0.98195 0.98069 1.01239 1.21973 0.92749 0.99791 1.02359 1.18782 0.94139 0.88946 0.79627 0.92924 1.21163 0.90542 1.39412 1.06426 0.92128 1.24858 0.98650 0.94691 0.95320 1.69877 1.35275 1.37340 1.09294 0.86502 0.84728 0.78347 0.77493 1.20180 1.21073 1.20160 1.45936 1.12766 1.58189 1.19493 1.16081 0.83822 0.78781 0.81975 1.90869 1.51396 1.64012 1.38036 1.43029 1.20127 1.54964 1.15503 1.17510 0.85524 0.90348 0.92379 1.21450 0.96475 0.98080 0.99450 1.19933 0.92707 0.93424 0.94540 1.20731 1.00650 1.01592 0.93554 1.18343 0.92996 1.01577 0.92086 1.59648 1.03852 1.05754 1.52751 1.22482 0.94041 0.97521 0.98092 1.22489 1.02573 0.91587 0.95504 1.21260 0.93101 0.96201 0.99050 1.15486 0.97433 1.09494 0.86593 1.25636 0.93718 0.93272 0.93018 1.81274 1.08358 1.09901 1.10555 0.95903 0.92974 0.94409 0.95074 0.88124 0.92404 0.78070 0.76177 0.81556 0.90708 0.90254 0.91519 0.95223 0.91011 0.90874 0.90940 0.91030 0.95239 0.85469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.15 0.32 -2.63 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.29 6.85 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.65 8.73 -34.44 -0.30 -13.95 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.90 11.29 55.43 0.63 -23.28 16 9 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.71 -13.97 5.03 -59.81 -0.30 -14.27 16 14 C 0.69 12.82 6.93 -86.92 -0.60 12.22 16 15 O -0.57 -11.84 10.63 5.29 0.06 -11.78 16 16 N -0.69 -10.21 5.16 -13.99 -0.07 -10.28 16 17 C 0.24 3.36 6.44 -83.35 -0.54 2.82 16 18 C -0.13 -1.84 8.34 -39.47 -0.33 -2.17 16 19 C 0.00 -0.04 5.90 -104.38 -0.62 -0.66 16 20 C -0.11 -1.06 9.75 36.01 0.35 -0.71 16 21 C 0.04 0.46 4.72 -83.75 -0.40 0.07 16 22 N -0.50 -4.25 3.91 -186.85 -0.73 -4.98 16 23 C 0.03 0.18 9.34 60.06 0.56 0.75 16 24 C 0.03 0.17 9.38 60.07 0.56 0.74 16 25 C -0.07 -0.75 8.27 -38.96 -0.32 -1.07 16 26 C -0.08 -0.99 5.75 -106.67 -0.61 -1.60 16 27 C 0.26 3.38 14.25 -22.46 -0.32 3.06 16 28 N -0.42 -6.25 18.54 41.85 0.78 -5.47 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 31 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 34 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.39 6.67 8.56 -40.82 -0.35 6.32 16 36 H 0.40 5.20 7.92 -40.82 -0.32 4.88 16 37 H 0.17 2.67 5.77 -52.49 -0.30 2.36 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.70 7.44 -51.93 -0.39 0.32 16 40 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 41 H 0.03 0.20 7.11 -51.93 -0.37 -0.17 16 42 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 46 H 0.03 0.19 7.33 -51.93 -0.38 -0.19 16 47 H 0.13 1.10 7.00 -52.49 -0.37 0.73 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -28.66 383.94 -8.32 -36.98 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.80 Total: 10.14 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -2.64 Total: 2.03 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.30 Total: -58.27 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.06 Total: -11.78 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.66 -8.32 -36.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436497918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.679 kcal (2) G-P(sol) polarization free energy of solvation -28.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds