Wall clock time and date at job start Tue Mar 31 2020 15:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47071 * 2 1 4 4 H 1.09003 * 109.47074 * 305.00752 * 3 2 1 5 5 C 1.50697 * 109.47263 * 185.00420 * 3 2 1 6 6 H 1.08000 * 119.99820 * 240.00027 * 5 3 2 7 7 C 1.37874 * 120.00252 * 59.99766 * 5 3 2 8 8 N 1.31513 * 119.99771 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00040 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47266 * 60.00034 * 9 7 5 11 11 H 1.48500 * 109.47162 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47367 * 299.99938 * 9 7 5 13 13 N 1.46501 * 109.46942 * 65.00081 * 3 2 1 14 14 C 1.34780 * 120.00241 * 275.00209 * 13 3 2 15 15 O 1.21586 * 119.99482 * 0.02562 * 14 13 3 16 16 N 1.34767 * 120.00202 * 180.02562 * 14 13 3 17 17 C 1.39636 * 120.00085 * 174.37825 * 16 14 13 18 18 C 1.38767 * 120.08540 * 335.16006 * 17 16 14 19 19 C 1.38005 * 120.15733 * 180.02562 * 18 17 16 20 20 C 1.50706 * 119.83309 * 179.97438 * 19 18 17 21 21 C 1.39119 * 120.33947 * 359.95073 * 19 18 17 22 22 N 1.39939 * 119.91610 * 180.02562 * 21 19 18 23 23 C 1.46891 * 111.00326 * 120.00137 * 22 21 19 24 24 C 1.46903 * 110.99696 * 243.95811 * 22 21 19 25 25 C 1.38444 * 120.17288 * 0.02888 * 21 19 18 26 26 C 1.39691 * 119.83344 * 359.73947 * 25 21 19 27 27 C 1.43205 * 120.16477 * 180.25018 * 26 25 21 28 28 N 7.11838 * 71.79110 * 62.03884 * 2 1 3 29 29 H 1.09003 * 109.46652 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47570 * 60.00262 * 1 2 3 31 31 H 1.09003 * 109.47334 * 299.99786 * 1 2 3 32 32 H 1.08995 * 109.47570 * 119.99738 * 2 1 3 33 33 H 1.09003 * 109.47334 * 240.00214 * 2 1 3 34 34 H 0.97003 * 119.99647 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99944 * 95.00309 * 13 3 2 36 36 H 0.97001 * 120.00325 * 354.36805 * 16 14 13 37 37 H 1.08002 * 119.92235 * 0.02562 * 18 17 16 38 38 H 1.09000 * 109.47291 * 89.99173 * 20 19 18 39 39 H 1.09003 * 109.47401 * 209.99611 * 20 19 18 40 40 H 1.08996 * 109.46855 * 329.99667 * 20 19 18 41 41 H 1.08995 * 109.47546 * 59.99591 * 23 22 21 42 42 H 1.09005 * 109.47328 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.47279 * 299.99799 * 23 22 21 44 44 H 1.08997 * 109.47650 * 59.99593 * 24 22 21 45 45 H 1.09002 * 109.46796 * 179.97438 * 24 22 21 46 46 H 1.09002 * 109.47074 * 299.99252 * 24 22 21 47 47 H 1.07997 * 120.08285 * 179.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4060 0.3376 -2.1733 9 14 6.0048 0.8802 -1.3813 10 1 6.5966 0.1455 -0.2345 11 1 6.3976 0.2170 -2.6505 12 1 6.5003 2.2802 -1.3810 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3671 15 8 -0.3417 2.6317 0.4322 16 7 0.0787 3.2673 2.5185 17 6 -1.1334 3.9557 2.6001 18 6 -1.7206 4.4689 1.4522 19 6 -2.9183 5.1500 1.5312 20 6 -3.5492 5.7048 0.2801 21 6 -3.5465 5.3267 2.7599 22 7 -4.7610 6.0183 2.8297 23 6 -5.8221 5.1646 3.3802 24 6 -4.6194 7.2531 3.6127 25 6 -2.9732 4.8201 3.9137 26 6 -1.7635 4.1253 3.8415 27 6 -1.1669 3.5937 5.0299 28 7 -0.6944 3.1705 5.9726 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8291 -0.0602 -2.9503 35 1 2.2719 2.1232 1.9978 36 1 0.6641 3.2229 3.2906 37 1 -1.2392 4.3350 0.4948 38 1 -4.2115 4.9566 -0.1554 39 1 -4.1229 6.5979 0.5277 40 1 -2.7694 5.9610 -0.4371 41 1 -5.5453 4.8424 4.3839 42 1 -6.7551 5.7267 3.4230 43 1 -5.9537 4.2911 2.7416 44 1 -3.8764 7.8979 3.1433 45 1 -5.5776 7.7712 3.6506 46 1 -4.2989 7.0067 4.6250 47 1 -3.4619 4.9585 4.8668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436497918.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:13 Heat of formation + Delta-G solvation = 19.956900 kcal Electronic energy + Delta-G solvation = -28248.710014 eV Core-core repulsion = 24431.296390 eV Total energy + Delta-G solvation = -3817.413624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.02107 -40.67516 -38.49760 -37.52357 -36.72764 -35.51384 -34.31008 -33.64028 -32.66133 -30.13234 -28.72341 -28.50765 -28.36182 -25.72381 -24.92193 -23.44850 -23.08661 -21.96086 -21.39812 -20.06438 -19.60415 -18.30796 -17.81870 -17.22617 -16.86150 -16.54805 -16.36960 -16.03088 -15.90322 -15.33635 -15.11581 -15.06275 -14.62728 -14.54495 -14.41530 -14.27446 -14.04596 -14.00453 -13.58663 -13.50110 -13.20231 -13.16498 -12.93206 -12.89925 -12.82840 -12.65949 -12.56648 -12.48258 -12.35433 -12.14319 -12.06711 -11.60732 -11.33888 -11.08579 -10.93347 -10.52925 -9.78692 -9.72326 -9.42692 -8.98752 -8.15805 -6.32354 -0.30305 0.21819 1.45043 1.46636 1.46956 1.53770 1.62353 1.81127 2.13302 2.41962 2.71459 2.80618 2.99016 3.13849 3.30462 3.72006 3.96465 4.18191 4.28459 4.41460 4.51593 4.52811 4.58799 4.65939 4.72068 4.74851 4.75136 4.87440 4.91562 4.98462 5.05770 5.08861 5.11212 5.13044 5.16239 5.27995 5.43440 5.45159 5.50470 5.58571 5.61084 5.68889 5.83435 5.85449 6.02053 6.11829 6.17841 6.33620 6.40211 6.74253 7.10677 7.34743 7.60354 8.89273 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.002810 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.771544 B = 9962.633488 C =10536.805408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 C 0.298 3.702 4 H 0.009 0.991 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.714 5.714 14 C 0.696 3.304 15 O -0.592 6.592 16 N -0.680 5.680 17 C 0.224 3.776 18 C -0.147 4.147 19 C -0.004 4.004 20 C -0.106 4.106 21 C 0.058 3.942 22 N -0.507 5.507 23 C 0.023 3.977 24 C 0.023 3.977 25 C -0.062 4.062 26 C -0.076 4.076 27 C 0.275 3.725 28 N -0.451 5.451 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.266 0.734 35 H 0.400 0.600 36 H 0.413 0.587 37 H 0.140 0.860 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.035 0.965 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.035 0.965 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.259 12.809 11.285 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.162 4.162 3 C 0.195 3.805 4 H 0.027 0.973 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.366 5.366 14 C 0.396 3.604 15 O -0.471 6.471 16 N -0.326 5.326 17 C 0.124 3.876 18 C -0.168 4.168 19 C -0.006 4.006 20 C -0.162 4.162 21 C -0.037 4.037 22 N -0.228 5.228 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.084 4.084 26 C -0.084 4.084 27 C -0.039 4.039 28 N -0.128 5.128 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.234 0.766 36 H 0.249 0.751 37 H 0.157 0.843 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.108 0.892 46 H 0.054 0.946 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.247 12.106 11.179 23.141 hybrid contribution 1.804 -0.517 0.788 2.036 sum -14.443 11.588 11.967 22.048 Atomic orbital electron populations 1.21643 0.96818 0.98961 1.00369 1.21824 0.93868 0.99306 1.01199 1.18314 0.93400 0.88808 0.80028 0.97283 1.21512 0.91423 1.39176 1.06713 0.91273 1.25679 1.02979 0.94372 0.95042 1.70022 1.36997 1.38128 1.09772 0.85481 0.79462 0.78407 0.77474 1.19303 1.21124 1.19698 1.45566 1.13717 1.58628 1.18674 1.16071 0.83119 0.78572 0.82596 1.90865 1.52047 1.64849 1.39375 1.42698 1.20828 1.54595 1.14474 1.17599 0.85463 0.91426 0.93155 1.21234 0.97590 0.99599 0.98402 1.20099 0.91911 0.92693 0.95912 1.20743 1.00580 1.02047 0.92830 1.18433 0.93396 1.00497 0.91381 1.59688 1.02994 1.06289 1.53816 1.22549 0.94315 0.97392 0.98048 1.22566 1.03662 0.90668 0.95394 1.21511 0.92040 0.94727 1.00165 1.15440 0.97859 1.09660 0.85394 1.25655 0.93028 0.92550 0.92701 1.81297 1.09159 1.10826 1.11488 0.94003 0.94867 0.94157 0.94536 0.90744 0.92513 0.76614 0.75063 0.84275 0.90515 0.88888 0.91864 0.94603 0.89114 0.91697 0.91230 0.89222 0.94630 0.83060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.51 71.98 0.61 -4.70 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.30 14.69 2.24 44.25 0.10 14.79 16 4 H 0.01 0.54 7.58 -2.39 -0.02 0.52 16 5 C -0.55 -28.31 8.73 25.60 0.22 -28.09 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.33 16 7 C 0.02 1.05 5.29 84.65 0.45 1.49 16 8 N -0.91 -50.75 11.29 21.45 0.24 -50.51 16 9 Si 0.97 41.40 29.54 68.60 2.03 43.42 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 13 N -0.71 -28.46 5.03 -461.41 -2.32 -30.78 16 14 C 0.70 26.34 6.93 179.06 1.24 27.58 16 15 O -0.59 -25.80 10.63 -3.99 -0.04 -25.84 16 16 N -0.68 -20.11 5.16 -316.44 -1.63 -21.74 16 17 C 0.22 6.09 6.44 38.51 0.25 6.34 16 18 C -0.15 -4.10 8.34 22.34 0.19 -3.91 16 19 C 0.00 -0.08 5.90 -19.71 -0.12 -0.20 16 20 C -0.11 -1.98 9.75 71.24 0.69 -1.29 16 21 C 0.06 1.06 4.72 38.11 0.18 1.24 16 22 N -0.51 -7.13 3.91 -745.08 -2.91 -10.05 16 23 C 0.02 0.26 9.34 127.69 1.19 1.46 16 24 C 0.02 0.24 9.38 127.69 1.20 1.44 16 25 C -0.06 -1.11 8.27 22.67 0.19 -0.92 16 26 C -0.08 -1.71 5.75 -21.19 -0.12 -1.83 16 27 C 0.27 6.75 14.25 88.33 1.26 8.01 16 28 N -0.45 -12.65 18.54 19.01 0.35 -12.30 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.03 1.55 7.84 -2.39 -0.02 1.54 16 31 H 0.04 1.73 5.64 -2.39 -0.01 1.72 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 4.01 5.95 -2.39 -0.01 4.00 16 34 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 35 H 0.40 13.74 8.56 -92.71 -0.79 12.95 16 36 H 0.41 10.46 7.92 -92.71 -0.73 9.73 16 37 H 0.14 4.72 5.77 -2.91 -0.02 4.70 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.48 7.44 -2.39 -0.02 1.46 16 40 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 41 H 0.04 0.37 7.11 -2.39 -0.02 0.35 16 42 H 0.09 0.70 8.12 -2.38 -0.02 0.68 16 43 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.09 0.63 8.12 -2.39 -0.02 0.61 16 46 H 0.04 0.33 7.33 -2.39 -0.02 0.32 16 47 H 0.15 2.04 7.00 -2.91 -0.02 2.02 16 Total: -1.00 -62.80 383.94 2.90 -59.90 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -0.51 Total: 32.24 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 7.70 Total: 15.65 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -6.27 Total: -125.37 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.04 Total: -25.84 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -62.80 2.90 -59.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436497918.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.855 kcal (2) G-P(sol) polarization free energy of solvation -62.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds