Wall clock time and date at job start Tue Mar 31 2020 15:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47239 * 2 1 4 4 H 1.09000 * 109.46901 * 55.00166 * 3 2 1 5 5 C 1.50694 * 109.47276 * 175.00134 * 3 2 1 6 6 H 1.08005 * 120.00287 * 120.00118 * 5 3 2 7 7 C 1.37882 * 119.99971 * 300.00308 * 5 3 2 8 8 N 1.31509 * 119.99763 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99839 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47122 * 89.99948 * 9 7 5 11 11 H 1.48498 * 109.46950 * 209.99703 * 9 7 5 12 12 H 1.48497 * 109.47307 * 329.99857 * 9 7 5 13 13 N 1.46496 * 109.47082 * 295.00142 * 3 2 1 14 14 C 1.34783 * 120.00002 * 85.00105 * 13 3 2 15 15 O 1.21585 * 119.99725 * 359.97438 * 14 13 3 16 16 N 1.34774 * 119.99974 * 179.97438 * 14 13 3 17 17 C 1.39624 * 119.99940 * 185.62190 * 16 14 13 18 18 C 1.38769 * 120.08807 * 24.84066 * 17 16 14 19 19 C 1.38017 * 120.15645 * 179.97438 * 18 17 16 20 20 C 1.50701 * 119.82727 * 179.72107 * 19 18 17 21 21 C 1.39113 * 120.34175 * 359.97438 * 19 18 17 22 22 N 1.39940 * 119.91443 * 179.97438 * 21 19 18 23 23 C 1.46901 * 110.99703 * 120.00125 * 22 21 19 24 24 C 1.46897 * 110.99815 * 243.94986 * 22 21 19 25 25 C 1.38445 * 120.16863 * 0.02562 * 21 19 18 26 26 C 1.39686 * 119.84356 * 0.02562 * 25 21 19 27 27 C 1.43191 * 120.16700 * 180.02562 * 26 25 21 28 28 N 7.12438 * 71.87945 * 298.06813 * 2 1 3 29 29 H 1.09003 * 109.46732 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46888 * 299.99396 * 1 2 3 31 31 H 1.09001 * 109.47224 * 60.00032 * 1 2 3 32 32 H 1.09007 * 109.46949 * 240.00063 * 2 1 3 33 33 H 1.08993 * 109.47294 * 120.00578 * 2 1 3 34 34 H 0.97007 * 119.99659 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00481 * 264.99706 * 13 3 2 36 36 H 0.97003 * 119.99834 * 5.62781 * 16 14 13 37 37 H 1.07993 * 119.92242 * 359.95413 * 18 17 16 38 38 H 1.09003 * 109.47376 * 89.99921 * 20 19 18 39 39 H 1.09000 * 109.47113 * 210.00179 * 20 19 18 40 40 H 1.08998 * 109.47272 * 330.00078 * 20 19 18 41 41 H 1.08989 * 109.47637 * 59.99803 * 23 22 21 42 42 H 1.08999 * 109.46585 * 180.02562 * 23 22 21 43 43 H 1.09007 * 109.46910 * 299.99464 * 23 22 21 44 44 H 1.09006 * 109.47111 * 60.00204 * 24 22 21 45 45 H 1.08998 * 109.46881 * 180.02562 * 24 22 21 46 46 H 1.08996 * 109.47497 * 300.00129 * 24 22 21 47 47 H 1.08001 * 120.07686 * 180.02562 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0051 0.8799 1.3810 10 1 6.4429 2.1128 2.0835 11 1 6.4391 -0.3112 2.1544 12 1 6.6131 0.8394 0.0268 13 7 1.6525 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3415 2.6318 -0.4319 16 7 0.0787 3.2674 -2.5183 17 6 -1.1332 3.9559 -2.5998 18 6 -1.7203 4.4691 -1.4519 19 6 -2.9180 5.1503 -1.5309 20 6 -3.5522 5.6991 -0.2788 21 6 -3.5455 5.3284 -2.7596 22 7 -4.7600 6.0201 -2.8293 23 6 -4.6417 7.2062 -3.6879 24 6 -5.8411 5.1403 -3.2930 25 6 -2.9720 4.8222 -3.9135 26 6 -1.7605 4.1306 -3.8420 27 6 -1.1610 3.6045 -5.0312 28 7 -0.6858 3.1859 -5.9747 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8294 -0.0612 2.9498 35 1 2.2719 2.1232 -1.9978 36 1 0.6642 3.2230 -3.2904 37 1 -1.2390 4.3349 -0.4945 38 1 -3.1946 6.7141 -0.1052 39 1 -4.6359 5.7107 -0.3954 40 1 -3.2848 5.0696 0.5699 41 1 -4.3560 6.8995 -4.6940 42 1 -5.5995 7.7254 -3.7241 43 1 -3.8819 7.8742 -3.2821 44 1 -5.9531 4.3062 -2.6001 45 1 -6.7733 5.7031 -3.3384 46 1 -5.5988 4.7586 -4.2848 47 1 -3.4602 4.9617 -4.8667 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436497919.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:18 Heat of formation + Delta-G solvation = 36.646215 kcal Electronic energy + Delta-G solvation = -28249.027534 eV Core-core repulsion = 24432.337612 eV Total energy + Delta-G solvation = -3816.689921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.85351 -39.50416 -37.45723 -36.30212 -35.26169 -34.27520 -32.70527 -32.41492 -30.94397 -29.00445 -27.84418 -27.60355 -26.92779 -24.77672 -23.19184 -22.39362 -22.00040 -20.61512 -19.65219 -18.88987 -18.27515 -17.07308 -16.27203 -15.95245 -15.69374 -15.32610 -15.19524 -14.94008 -14.44235 -14.30133 -13.96286 -13.86795 -13.51892 -13.35981 -13.28103 -12.99895 -12.73544 -12.67391 -12.59791 -12.57685 -12.12278 -11.96287 -11.83756 -11.71090 -11.57150 -11.46916 -11.30325 -10.99911 -10.89613 -10.36449 -10.27620 -10.20569 -9.65999 -9.48951 -9.11165 -8.80217 -8.77501 -8.56409 -8.12690 -7.81252 -6.18086 -4.27583 0.68642 1.17843 2.52144 2.82518 2.91649 3.21500 3.28821 3.30688 3.48430 3.62316 3.80122 3.89940 4.27180 4.61043 4.69773 4.88457 4.91574 5.04645 5.13946 5.16822 5.22704 5.23541 5.41782 5.53567 5.60892 5.63062 5.75168 5.80481 5.83740 6.00882 6.16141 6.31545 6.36334 6.42773 6.55331 6.59783 6.61065 6.85036 6.87952 7.04068 7.17272 7.23420 7.28113 7.35131 7.38323 7.58641 7.77181 7.86468 8.11779 8.60479 8.73150 9.06875 9.39889 10.87226 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.002811 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.774902 B = 9958.629463 C =10538.284801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C 0.286 3.714 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.713 5.713 14 C 0.693 3.307 15 O -0.566 6.566 16 N -0.691 5.691 17 C 0.245 3.755 18 C -0.134 4.134 19 C -0.003 4.003 20 C -0.110 4.110 21 C 0.045 3.955 22 N -0.500 5.500 23 C 0.026 3.974 24 C 0.025 3.975 25 C -0.073 4.073 26 C -0.082 4.082 27 C 0.258 3.742 28 N -0.425 5.425 29 H 0.022 0.978 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.101 0.899 34 H 0.265 0.735 35 H 0.387 0.613 36 H 0.403 0.597 37 H 0.167 0.833 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.029 0.971 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.029 0.971 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.266 11.586 -9.396 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.169 4.169 3 C 0.185 3.815 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.364 5.364 14 C 0.393 3.607 15 O -0.443 6.443 16 N -0.336 5.336 17 C 0.143 3.857 18 C -0.155 4.155 19 C -0.006 4.006 20 C -0.166 4.166 21 C -0.050 4.050 22 N -0.220 5.220 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.096 4.096 26 C -0.090 4.090 27 C -0.056 4.056 28 N -0.101 5.101 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.219 0.781 36 H 0.238 0.762 37 H 0.184 0.816 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.048 0.952 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.211 10.877 -9.240 20.858 hybrid contribution 1.633 -0.287 -1.350 2.138 sum -13.578 10.590 -10.590 20.215 Atomic orbital electron populations 1.21821 0.98193 0.98071 1.01238 1.21972 0.92751 0.99786 1.02358 1.18783 0.94162 0.88951 0.79633 0.92923 1.21201 0.90542 1.39314 1.06410 0.92078 1.24863 0.98651 0.94693 0.95336 1.69888 1.35182 1.37400 1.09304 0.86444 0.84730 0.77699 0.78211 1.20515 1.21026 1.19890 1.45935 1.12770 1.58183 1.19493 1.16082 0.83821 0.78780 0.81972 1.90868 1.51400 1.64015 1.38034 1.43029 1.20122 1.54964 1.15506 1.17510 0.85533 0.90353 0.92353 1.21450 0.96342 0.98169 0.99504 1.19934 0.92677 0.93416 0.94561 1.20743 1.01551 1.00744 0.93609 1.18344 0.93085 1.01454 0.92132 1.59655 1.03021 1.07443 1.51882 1.22478 1.02699 0.92388 0.94533 1.22494 0.93769 0.97011 0.98925 1.21260 0.93161 0.96083 0.99098 1.15483 0.97453 1.09556 0.86525 1.25634 0.93716 0.93273 0.93023 1.81277 1.08373 1.09890 1.10548 0.95901 0.92976 0.94406 0.95072 0.88125 0.92465 0.78066 0.76175 0.81558 0.90914 0.90190 0.91264 0.95237 0.91027 0.90950 0.90857 0.91017 0.95226 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.29 6.84 2.24 -69.09 -0.15 6.68 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.63 8.73 -34.44 -0.30 -13.93 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.89 11.29 55.43 0.63 -23.26 16 9 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 N -0.71 -13.96 5.03 -59.82 -0.30 -14.26 16 14 C 0.69 12.81 6.93 -86.91 -0.60 12.21 16 15 O -0.57 -11.83 10.63 5.29 0.06 -11.77 16 16 N -0.69 -10.20 5.17 -13.99 -0.07 -10.28 16 17 C 0.24 3.36 6.44 -83.36 -0.54 2.83 16 18 C -0.13 -1.84 8.34 -39.47 -0.33 -2.17 16 19 C 0.00 -0.04 5.90 -104.38 -0.62 -0.65 16 20 C -0.11 -1.08 9.76 36.01 0.35 -0.72 16 21 C 0.04 0.46 4.72 -83.76 -0.40 0.06 16 22 N -0.50 -4.25 3.91 -186.86 -0.73 -4.98 16 23 C 0.03 0.18 9.34 60.07 0.56 0.74 16 24 C 0.02 0.18 9.38 60.06 0.56 0.74 16 25 C -0.07 -0.75 8.27 -38.96 -0.32 -1.07 16 26 C -0.08 -0.99 5.75 -106.68 -0.61 -1.61 16 27 C 0.26 3.37 14.25 -22.47 -0.32 3.05 16 28 N -0.42 -6.24 18.54 41.85 0.78 -5.47 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 31 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 32 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.39 6.67 8.56 -40.82 -0.35 6.32 16 36 H 0.40 5.21 7.91 -40.82 -0.32 4.88 16 37 H 0.17 2.66 5.77 -52.49 -0.30 2.36 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.73 7.43 -51.93 -0.39 0.35 16 40 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 41 H 0.03 0.19 7.11 -51.94 -0.37 -0.18 16 42 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 43 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 46 H 0.03 0.21 7.33 -51.93 -0.38 -0.17 16 47 H 0.13 1.10 7.00 -52.49 -0.37 0.73 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -28.65 383.93 -8.32 -36.96 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.80 Total: 10.12 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -2.64 Total: 2.02 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.30 Total: -58.24 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.06 Total: -11.77 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.65 -8.32 -36.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436497919.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.611 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds