Wall clock time and date at job start Tue Mar 31 2020 15:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47239 * 2 1 4 4 H 1.09000 * 109.46901 * 55.00166 * 3 2 1 5 5 C 1.50694 * 109.47276 * 175.00134 * 3 2 1 6 6 H 1.08005 * 120.00287 * 120.00118 * 5 3 2 7 7 C 1.37882 * 119.99971 * 300.00308 * 5 3 2 8 8 N 1.31509 * 119.99763 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99839 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47122 * 89.99948 * 9 7 5 11 11 H 1.48498 * 109.46950 * 209.99703 * 9 7 5 12 12 H 1.48497 * 109.47307 * 329.99857 * 9 7 5 13 13 N 1.46496 * 109.47082 * 295.00142 * 3 2 1 14 14 C 1.34783 * 120.00002 * 85.00105 * 13 3 2 15 15 O 1.21585 * 119.99725 * 359.97438 * 14 13 3 16 16 N 1.34774 * 119.99974 * 179.97438 * 14 13 3 17 17 C 1.39624 * 119.99940 * 185.62190 * 16 14 13 18 18 C 1.38769 * 120.08807 * 24.84066 * 17 16 14 19 19 C 1.38017 * 120.15645 * 179.97438 * 18 17 16 20 20 C 1.50701 * 119.82727 * 179.72107 * 19 18 17 21 21 C 1.39113 * 120.34175 * 359.97438 * 19 18 17 22 22 N 1.39940 * 119.91443 * 179.97438 * 21 19 18 23 23 C 1.46901 * 110.99703 * 120.00125 * 22 21 19 24 24 C 1.46897 * 110.99815 * 243.94986 * 22 21 19 25 25 C 1.38445 * 120.16863 * 0.02562 * 21 19 18 26 26 C 1.39686 * 119.84356 * 0.02562 * 25 21 19 27 27 C 1.43191 * 120.16700 * 180.02562 * 26 25 21 28 28 N 7.12438 * 71.87945 * 298.06813 * 2 1 3 29 29 H 1.09003 * 109.46732 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46888 * 299.99396 * 1 2 3 31 31 H 1.09001 * 109.47224 * 60.00032 * 1 2 3 32 32 H 1.09007 * 109.46949 * 240.00063 * 2 1 3 33 33 H 1.08993 * 109.47294 * 120.00578 * 2 1 3 34 34 H 0.97007 * 119.99659 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00481 * 264.99706 * 13 3 2 36 36 H 0.97003 * 119.99834 * 5.62781 * 16 14 13 37 37 H 1.07993 * 119.92242 * 359.95413 * 18 17 16 38 38 H 1.09003 * 109.47376 * 89.99921 * 20 19 18 39 39 H 1.09000 * 109.47113 * 210.00179 * 20 19 18 40 40 H 1.08998 * 109.47272 * 330.00078 * 20 19 18 41 41 H 1.08989 * 109.47637 * 59.99803 * 23 22 21 42 42 H 1.08999 * 109.46585 * 180.02562 * 23 22 21 43 43 H 1.09007 * 109.46910 * 299.99464 * 23 22 21 44 44 H 1.09006 * 109.47111 * 60.00204 * 24 22 21 45 45 H 1.08998 * 109.46881 * 180.02562 * 24 22 21 46 46 H 1.08996 * 109.47497 * 300.00129 * 24 22 21 47 47 H 1.08001 * 120.07686 * 180.02562 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0051 0.8799 1.3810 10 1 6.4429 2.1128 2.0835 11 1 6.4391 -0.3112 2.1544 12 1 6.6131 0.8394 0.0268 13 7 1.6525 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3415 2.6318 -0.4319 16 7 0.0787 3.2674 -2.5183 17 6 -1.1332 3.9559 -2.5998 18 6 -1.7203 4.4691 -1.4519 19 6 -2.9180 5.1503 -1.5309 20 6 -3.5522 5.6991 -0.2788 21 6 -3.5455 5.3284 -2.7596 22 7 -4.7600 6.0201 -2.8293 23 6 -4.6417 7.2062 -3.6879 24 6 -5.8411 5.1403 -3.2930 25 6 -2.9720 4.8222 -3.9135 26 6 -1.7605 4.1306 -3.8420 27 6 -1.1610 3.6045 -5.0312 28 7 -0.6858 3.1859 -5.9747 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8294 -0.0612 2.9498 35 1 2.2719 2.1232 -1.9978 36 1 0.6642 3.2230 -3.2904 37 1 -1.2390 4.3349 -0.4945 38 1 -3.1946 6.7141 -0.1052 39 1 -4.6359 5.7107 -0.3954 40 1 -3.2848 5.0696 0.5699 41 1 -4.3560 6.8995 -4.6940 42 1 -5.5995 7.7254 -3.7241 43 1 -3.8819 7.8742 -3.2821 44 1 -5.9531 4.3062 -2.6001 45 1 -6.7733 5.7031 -3.3384 46 1 -5.5988 4.7586 -4.2848 47 1 -3.4602 4.9617 -4.8667 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436497919.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:17 Heat of formation + Delta-G solvation = 19.908502 kcal Electronic energy + Delta-G solvation = -28249.753335 eV Core-core repulsion = 24432.337612 eV Total energy + Delta-G solvation = -3817.415723 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.02091 -40.67486 -38.49785 -37.52322 -36.72748 -35.51404 -34.31044 -33.63971 -32.66084 -30.13211 -28.72417 -28.50966 -28.35923 -25.72458 -24.92283 -23.44829 -23.08674 -21.96028 -21.39793 -20.06384 -19.60403 -18.30973 -17.82136 -17.22274 -16.86085 -16.55091 -16.37169 -16.02601 -15.90475 -15.35180 -15.11953 -15.04421 -14.62858 -14.54854 -14.41892 -14.25566 -14.05812 -13.99502 -13.58209 -13.50485 -13.19669 -13.17400 -12.94936 -12.87502 -12.80974 -12.68765 -12.58856 -12.47624 -12.36111 -12.13181 -12.06763 -11.60540 -11.33442 -11.07959 -10.93093 -10.53369 -9.77726 -9.72818 -9.43202 -8.98404 -8.16075 -6.32423 -0.30306 0.21912 1.44712 1.45474 1.46812 1.54846 1.62492 1.81115 2.13295 2.41760 2.71526 2.80571 2.99088 3.13753 3.30430 3.72011 3.96514 4.18139 4.28492 4.41528 4.51615 4.52850 4.58868 4.65902 4.71996 4.74778 4.75141 4.87290 4.92297 4.98252 5.05828 5.08964 5.11277 5.12979 5.16239 5.28047 5.43746 5.45333 5.50453 5.58610 5.61187 5.68866 5.83532 5.85438 6.02037 6.11785 6.17830 6.33619 6.40238 6.74412 7.10637 7.34689 7.60335 8.89216 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.002811 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.774902 B = 9958.629463 C =10538.284801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 C 0.298 3.702 4 H 0.009 0.991 5 C -0.549 4.549 6 H 0.069 0.931 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.967 3.033 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.264 1.264 13 N -0.714 5.714 14 C 0.696 3.304 15 O -0.592 6.592 16 N -0.680 5.680 17 C 0.224 3.776 18 C -0.147 4.147 19 C -0.003 4.003 20 C -0.106 4.106 21 C 0.058 3.942 22 N -0.507 5.507 23 C 0.024 3.976 24 C 0.023 3.977 25 C -0.061 4.061 26 C -0.076 4.076 27 C 0.275 3.725 28 N -0.451 5.451 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.265 0.735 35 H 0.400 0.600 36 H 0.413 0.587 37 H 0.140 0.860 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.035 0.965 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.314 12.746 -11.289 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.162 4.162 3 C 0.194 3.806 4 H 0.027 0.973 5 C -0.587 4.587 6 H 0.087 0.913 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.792 3.208 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.189 1.189 13 N -0.366 5.366 14 C 0.396 3.604 15 O -0.471 6.471 16 N -0.326 5.326 17 C 0.124 3.876 18 C -0.168 4.168 19 C -0.006 4.006 20 C -0.163 4.163 21 C -0.037 4.037 22 N -0.228 5.228 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.084 4.084 26 C -0.084 4.084 27 C -0.039 4.039 28 N -0.128 5.128 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.234 0.766 36 H 0.249 0.751 37 H 0.157 0.843 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.053 0.947 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.283 12.072 -11.195 23.156 hybrid contribution 1.792 -0.534 -0.768 2.021 sum -14.492 11.539 -11.963 22.051 Atomic orbital electron populations 1.21645 0.96817 0.98963 1.00368 1.21823 0.93868 0.99298 1.01204 1.18316 0.93418 0.88817 0.80032 0.97282 1.21539 0.91411 1.39070 1.06678 0.91278 1.25682 1.02968 0.94384 0.95064 1.70028 1.36921 1.38178 1.09799 0.85427 0.79491 0.77473 0.78426 1.20351 1.20979 1.18866 1.45565 1.13720 1.58623 1.18673 1.16073 0.83119 0.78573 0.82592 1.90864 1.52049 1.64848 1.39371 1.42698 1.20823 1.54595 1.14475 1.17599 0.85473 0.91424 0.93130 1.21232 0.97460 0.99709 0.98449 1.20101 0.91867 0.92681 0.95938 1.20748 1.01988 1.01012 0.92517 1.18431 0.93503 1.00374 0.91424 1.59694 1.02197 1.07907 1.52965 1.22557 1.03760 0.91570 0.94366 1.22558 0.94014 0.96920 0.98858 1.21510 0.92100 0.94597 1.00216 1.15435 0.97884 1.09729 0.85323 1.25653 0.93028 0.92547 0.92706 1.81300 1.09174 1.10817 1.11481 0.94001 0.94872 0.94152 0.94519 0.90751 0.92524 0.76616 0.75065 0.84288 0.89759 0.89160 0.92266 0.94584 0.89239 0.91261 0.91649 0.89099 0.94684 0.83062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.51 71.98 0.61 -4.70 16 2 C -0.12 -5.91 5.45 30.59 0.17 -5.75 16 3 C 0.30 14.67 2.24 44.24 0.10 14.77 16 4 H 0.01 0.54 7.58 -2.39 -0.02 0.52 16 5 C -0.55 -28.24 8.73 25.60 0.22 -28.01 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 7 C 0.02 1.03 5.29 84.66 0.45 1.48 16 8 N -0.91 -50.73 11.29 21.45 0.24 -50.49 16 9 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 13 N -0.71 -28.45 5.03 -461.43 -2.32 -30.77 16 14 C 0.70 26.33 6.93 179.05 1.24 27.57 16 15 O -0.59 -25.79 10.63 -3.98 -0.04 -25.83 16 16 N -0.68 -20.10 5.17 -316.42 -1.63 -21.74 16 17 C 0.22 6.09 6.44 38.52 0.25 6.34 16 18 C -0.15 -4.11 8.34 22.34 0.19 -3.92 16 19 C 0.00 -0.07 5.90 -19.71 -0.12 -0.19 16 20 C -0.11 -1.99 9.76 71.24 0.69 -1.30 16 21 C 0.06 1.06 4.72 38.11 0.18 1.24 16 22 N -0.51 -7.13 3.91 -745.09 -2.91 -10.04 16 23 C 0.02 0.25 9.34 127.69 1.19 1.44 16 24 C 0.02 0.26 9.38 127.69 1.20 1.46 16 25 C -0.06 -1.10 8.27 22.67 0.19 -0.91 16 26 C -0.08 -1.71 5.75 -21.20 -0.12 -1.84 16 27 C 0.27 6.75 14.25 88.33 1.26 8.01 16 28 N -0.45 -12.64 18.54 19.01 0.35 -12.29 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.03 1.55 7.84 -2.39 -0.02 1.53 16 31 H 0.04 1.73 5.64 -2.39 -0.01 1.72 16 32 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.07 4.01 5.95 -2.39 -0.01 3.99 16 34 H 0.27 14.05 8.31 -92.70 -0.77 13.28 16 35 H 0.40 13.75 8.56 -92.71 -0.79 12.96 16 36 H 0.41 10.47 7.91 -92.71 -0.73 9.73 16 37 H 0.14 4.72 5.77 -2.91 -0.02 4.70 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.51 7.43 -2.39 -0.02 1.49 16 40 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 41 H 0.04 0.33 7.11 -2.39 -0.02 0.32 16 42 H 0.09 0.63 8.12 -2.39 -0.02 0.61 16 43 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.09 0.70 8.12 -2.39 -0.02 0.68 16 46 H 0.03 0.37 7.33 -2.39 -0.02 0.35 16 47 H 0.15 2.04 7.00 -2.91 -0.02 2.02 16 Total: -1.00 -62.81 383.93 2.90 -59.91 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -0.51 Total: 32.14 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 7.70 Total: 15.67 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -6.27 Total: -125.33 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.04 Total: -25.83 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -62.81 2.90 -59.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436497919.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.814 kcal (2) G-P(sol) polarization free energy of solvation -62.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds