Wall clock time and date at job start Tue Mar 31 2020 15:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47057 * 2 1 4 4 N 1.46507 * 109.46901 * 119.99581 * 2 1 3 5 5 N 1.39795 * 125.34025 * 300.02649 * 4 2 1 6 6 C 1.30195 * 110.13073 * 179.97438 * 5 4 2 7 7 C 1.45971 * 107.58960 * 0.02562 * 6 5 4 8 8 C 1.39653 * 134.12286 * 180.35628 * 7 6 5 9 9 C 1.39516 * 117.95131 * 180.11786 * 8 7 6 10 10 C 1.47685 * 120.40736 * 179.78730 * 9 8 7 11 11 O 1.21573 * 120.00279 * 359.72189 * 10 9 8 12 12 N 1.34777 * 119.99444 * 179.71883 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72385 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 C 1.52998 * 109.46876 * 299.99984 * 14 13 12 16 16 C 1.53005 * 109.46795 * 60.00011 * 14 13 12 17 17 C 1.50700 * 109.47208 * 180.02562 * 14 13 12 18 18 H 1.08002 * 119.99770 * 359.97438 * 17 14 13 19 19 C 1.37876 * 119.99720 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00513 * 0.02562 * 19 17 14 21 21 Si 1.86809 * 119.99651 * 179.97438 * 19 17 14 22 22 H 1.48491 * 109.47115 * 89.99974 * 21 19 17 23 23 H 1.48509 * 109.46780 * 210.00159 * 21 19 17 24 24 H 1.48497 * 109.46888 * 329.99916 * 21 19 17 25 25 C 1.40185 * 119.17535 * 359.50895 * 9 8 7 26 26 N 1.31185 * 121.37927 * 0.23398 * 25 9 8 27 27 C 1.32929 * 121.84289 * 0.02562 * 26 25 9 28 28 H 1.09005 * 109.46985 * 60.00517 * 1 2 3 29 29 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47473 * 300.00255 * 1 2 3 31 31 H 1.09001 * 109.47619 * 239.99470 * 2 1 3 32 32 H 1.09001 * 109.47201 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46871 * 299.99720 * 3 2 1 34 34 H 1.08998 * 109.46973 * 59.99969 * 3 2 1 35 35 H 1.08006 * 126.20943 * 180.02562 * 6 5 4 36 36 H 1.08005 * 121.02727 * 359.90636 * 8 7 6 37 37 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 39 39 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 40 40 H 1.08996 * 109.47009 * 60.00253 * 15 14 13 41 41 H 1.09004 * 109.46783 * 179.97438 * 15 14 13 42 42 H 1.08998 * 109.47156 * 300.00070 * 15 14 13 43 43 H 1.09000 * 109.47011 * 60.00556 * 16 14 13 44 44 H 1.09004 * 109.46658 * 180.02562 * 16 14 13 45 45 H 1.08996 * 109.47069 * 299.99740 * 16 14 13 46 46 H 0.96999 * 120.00239 * 180.02562 * 20 19 17 47 47 H 1.07999 * 119.30574 * 180.25212 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 7 1.7498 -0.3117 2.5149 6 6 2.3292 -1.1318 3.3436 7 6 3.0377 -2.1323 2.5511 8 6 3.8183 -3.2469 2.8652 9 6 4.3510 -3.9900 1.8114 10 6 5.1882 -5.1763 2.0816 11 8 5.4211 -5.5077 3.2279 12 7 5.6940 -5.8915 1.0573 13 6 6.5294 -7.0647 1.3253 14 6 6.9762 -7.6861 0.0004 15 6 5.7460 -8.1092 -0.8049 16 6 7.7806 -6.6589 -0.7990 17 6 7.8351 -8.8933 0.2760 18 1 8.0420 -9.1876 1.2944 19 6 8.3567 -9.6219 -0.7718 20 7 8.1051 -9.2632 -2.0118 21 14 9.4219 -11.1180 -0.4301 22 1 8.5641 -12.3268 -0.3421 23 1 10.4049 -11.2874 -1.5304 24 1 10.1438 -10.9288 0.8538 25 6 4.0769 -3.6002 0.4931 26 7 3.3350 -2.5504 0.2315 27 6 2.8079 -1.8056 1.1981 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 2.2924 -1.0812 4.4218 36 1 4.0066 -3.5231 3.8922 37 1 5.5085 -5.6269 0.1427 38 1 7.4059 -6.7633 1.8990 39 1 5.9564 -7.7964 1.8948 40 1 5.1244 -7.2363 -1.0043 41 1 6.0642 -8.5514 -1.7490 42 1 5.1729 -8.8408 -0.2353 43 1 8.6570 -6.3576 -0.2252 44 1 8.0984 -7.1015 -1.7431 45 1 7.1589 -5.7861 -0.9984 46 1 8.4718 -9.7761 -2.7490 47 1 4.4849 -4.1763 -0.3242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457984850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:20 Heat of formation + Delta-G solvation = 55.536024 kcal Electronic energy + Delta-G solvation = -27712.974101 eV Core-core repulsion = 23897.103303 eV Total energy + Delta-G solvation = -3815.870798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85297 -39.62959 -37.97339 -36.37294 -35.87940 -33.40426 -32.80846 -31.14367 -30.49743 -29.72209 -27.67406 -25.85873 -25.74438 -25.16561 -24.06220 -23.57215 -23.13551 -20.53458 -20.06640 -18.88124 -18.09816 -17.85051 -16.65165 -16.01264 -15.88178 -15.69632 -14.90367 -14.84204 -14.79338 -14.72910 -14.29265 -13.76901 -13.68085 -13.30046 -13.22470 -12.96781 -12.91537 -12.68847 -12.55218 -12.44043 -12.20752 -11.79949 -11.79087 -11.41588 -11.22260 -11.11131 -10.88994 -10.70782 -10.66028 -10.40178 -10.23604 -10.04220 -9.65641 -9.51069 -9.28842 -9.28580 -8.80869 -8.63798 -8.43150 -8.30463 -6.03252 -4.13313 0.54765 0.71092 1.80879 2.17467 3.00615 3.27963 3.35111 3.38397 3.56068 3.81312 3.82756 3.96325 4.32522 4.39077 4.48892 4.54231 4.65156 4.71107 4.81093 5.04418 5.12139 5.14679 5.19587 5.23703 5.33650 5.35853 5.47942 5.71187 5.74872 5.87159 5.99690 6.17612 6.24211 6.30274 6.48440 6.54417 6.73904 6.79842 6.90699 6.96334 7.00066 7.14918 7.33318 7.54010 7.62284 7.68343 7.96748 7.99547 8.12797 8.36519 8.59050 8.87295 9.52666 10.98184 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.002302 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.129278 B =12161.360206 C =12889.497912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.162 3.838 3 C -0.161 4.161 4 N -0.384 5.384 5 N -0.239 5.239 6 C 0.092 3.908 7 C -0.239 4.239 8 C 0.068 3.932 9 C -0.225 4.225 10 C 0.559 3.441 11 O -0.549 6.549 12 N -0.710 5.710 13 C 0.132 3.868 14 C 0.055 3.945 15 C -0.132 4.132 16 C -0.132 4.132 17 C -0.506 4.506 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.204 3.796 26 N -0.506 5.506 27 C 0.327 3.673 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.203 0.797 36 H 0.154 0.846 37 H 0.396 0.604 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.006 0.994 41 H 0.086 0.914 42 H 0.027 0.973 43 H 0.028 0.972 44 H 0.086 0.914 45 H 0.006 0.994 46 H 0.260 0.740 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.406 18.876 3.503 23.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.061 3.939 3 C -0.219 4.219 4 N -0.175 5.175 5 N -0.050 5.050 6 C -0.107 4.107 7 C -0.249 4.249 8 C 0.039 3.961 9 C -0.232 4.232 10 C 0.345 3.655 11 O -0.428 6.428 12 N -0.360 5.360 13 C 0.009 3.991 14 C 0.055 3.945 15 C -0.190 4.190 16 C -0.190 4.190 17 C -0.544 4.544 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C 0.034 3.966 26 N -0.220 5.220 27 C 0.088 3.912 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.220 0.780 36 H 0.172 0.828 37 H 0.233 0.767 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.025 0.975 41 H 0.105 0.895 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.105 0.895 45 H 0.025 0.975 46 H 0.070 0.930 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -14.203 20.010 2.994 24.720 hybrid contribution 1.159 -1.647 0.510 2.078 sum -13.044 18.362 3.504 22.795 Atomic orbital electron populations 1.22145 0.93442 1.02964 1.03312 1.21358 0.95278 0.93687 0.83611 1.22146 1.01864 0.94547 1.03312 1.48481 1.42544 1.21806 1.04682 1.76628 1.19815 1.21599 0.86980 1.25105 0.94589 0.91049 0.99954 1.20477 1.08758 1.01728 0.93925 1.21173 0.86688 0.87843 1.00369 1.20842 1.06690 1.01012 0.94702 1.17824 0.79814 0.82305 0.85577 1.90750 1.60754 1.70239 1.21076 1.46241 1.51286 1.29941 1.08575 1.21784 0.92490 0.84454 1.00326 1.18370 0.93352 0.93844 0.88959 1.21847 0.96241 0.97554 1.03325 1.21846 0.98039 0.95757 1.03323 1.20971 1.30278 1.10210 0.92953 0.92384 1.24877 0.96133 0.97432 0.95064 1.69797 1.45049 1.39473 0.98113 0.86574 0.80283 0.83090 0.77942 1.20723 1.21285 1.19902 1.22933 0.88896 0.89480 0.95282 1.66675 1.13384 1.07292 1.34665 1.19167 0.92209 0.89317 0.90507 0.90563 0.92110 0.91240 0.87308 0.92110 0.90559 0.91247 0.78015 0.82845 0.76746 0.92410 0.92404 0.97536 0.89520 0.95336 0.95331 0.89522 0.97532 0.92986 0.81343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.43 37.16 0.35 -0.80 16 2 C 0.16 1.40 3.67 -67.93 -0.25 1.15 16 3 C -0.16 -1.15 9.43 37.16 0.35 -0.80 16 4 N -0.38 -4.32 3.31 -53.89 -0.18 -4.50 16 5 N -0.24 -2.56 12.20 31.87 0.39 -2.17 16 6 C 0.09 0.86 12.30 -15.15 -0.19 0.68 16 7 C -0.24 -2.82 6.36 -105.20 -0.67 -3.49 16 8 C 0.07 0.84 9.76 -38.58 -0.38 0.47 16 9 C -0.22 -3.11 5.89 -104.83 -0.62 -3.72 16 10 C 0.56 9.44 7.77 -12.40 -0.10 9.34 16 11 O -0.55 -10.96 16.40 5.30 0.09 -10.88 16 12 N -0.71 -12.12 4.91 -61.30 -0.30 -12.42 16 13 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 14 C 0.06 1.24 0.50 -155.66 -0.08 1.17 16 15 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 16 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 17 C -0.51 -12.94 8.01 -34.44 -0.28 -13.22 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 20 N -0.89 -23.21 9.35 55.43 0.52 -22.70 16 21 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 25 C 0.20 2.60 10.69 -17.10 -0.18 2.41 16 26 N -0.51 -6.69 10.35 -12.03 -0.12 -6.82 16 27 C 0.33 4.21 7.91 -156.09 -1.23 2.97 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.11 0.95 8.04 -51.93 -0.42 0.54 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.20 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.15 1.71 7.72 -52.48 -0.41 1.30 16 37 H 0.40 6.01 4.20 -40.82 -0.17 5.84 16 38 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 41 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 45 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 46 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 47 H 0.17 1.82 6.39 -52.49 -0.34 1.48 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -30.06 382.65 -8.50 -38.56 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.86 Total: 4.44 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.78 Total: -4.72 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.30 Total: -48.61 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.06 -8.50 -38.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457984850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.098 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds