Wall clock time and date at job start Tue Mar 31 2020 15:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47057 * 2 1 4 4 N 1.46507 * 109.46901 * 119.99581 * 2 1 3 5 5 N 1.39795 * 125.34025 * 300.02649 * 4 2 1 6 6 C 1.30195 * 110.13073 * 179.97438 * 5 4 2 7 7 C 1.45971 * 107.58960 * 0.02562 * 6 5 4 8 8 C 1.39653 * 134.12286 * 180.35628 * 7 6 5 9 9 C 1.39516 * 117.95131 * 180.11786 * 8 7 6 10 10 C 1.47685 * 120.40736 * 179.78730 * 9 8 7 11 11 O 1.21573 * 120.00279 * 359.72189 * 10 9 8 12 12 N 1.34777 * 119.99444 * 179.71883 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72385 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 C 1.52998 * 109.46876 * 299.99984 * 14 13 12 16 16 C 1.53005 * 109.46795 * 60.00011 * 14 13 12 17 17 C 1.50700 * 109.47208 * 180.02562 * 14 13 12 18 18 H 1.08002 * 119.99770 * 359.97438 * 17 14 13 19 19 C 1.37876 * 119.99720 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00513 * 0.02562 * 19 17 14 21 21 Si 1.86809 * 119.99651 * 179.97438 * 19 17 14 22 22 H 1.48491 * 109.47115 * 89.99974 * 21 19 17 23 23 H 1.48509 * 109.46780 * 210.00159 * 21 19 17 24 24 H 1.48497 * 109.46888 * 329.99916 * 21 19 17 25 25 C 1.40185 * 119.17535 * 359.50895 * 9 8 7 26 26 N 1.31185 * 121.37927 * 0.23398 * 25 9 8 27 27 C 1.32929 * 121.84289 * 0.02562 * 26 25 9 28 28 H 1.09005 * 109.46985 * 60.00517 * 1 2 3 29 29 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47473 * 300.00255 * 1 2 3 31 31 H 1.09001 * 109.47619 * 239.99470 * 2 1 3 32 32 H 1.09001 * 109.47201 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46871 * 299.99720 * 3 2 1 34 34 H 1.08998 * 109.46973 * 59.99969 * 3 2 1 35 35 H 1.08006 * 126.20943 * 180.02562 * 6 5 4 36 36 H 1.08005 * 121.02727 * 359.90636 * 8 7 6 37 37 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 39 39 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 40 40 H 1.08996 * 109.47009 * 60.00253 * 15 14 13 41 41 H 1.09004 * 109.46783 * 179.97438 * 15 14 13 42 42 H 1.08998 * 109.47156 * 300.00070 * 15 14 13 43 43 H 1.09000 * 109.47011 * 60.00556 * 16 14 13 44 44 H 1.09004 * 109.46658 * 180.02562 * 16 14 13 45 45 H 1.08996 * 109.47069 * 299.99740 * 16 14 13 46 46 H 0.96999 * 120.00239 * 180.02562 * 20 19 17 47 47 H 1.07999 * 119.30574 * 180.25212 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 7 1.7498 -0.3117 2.5149 6 6 2.3292 -1.1318 3.3436 7 6 3.0377 -2.1323 2.5511 8 6 3.8183 -3.2469 2.8652 9 6 4.3510 -3.9900 1.8114 10 6 5.1882 -5.1763 2.0816 11 8 5.4211 -5.5077 3.2279 12 7 5.6940 -5.8915 1.0573 13 6 6.5294 -7.0647 1.3253 14 6 6.9762 -7.6861 0.0004 15 6 5.7460 -8.1092 -0.8049 16 6 7.7806 -6.6589 -0.7990 17 6 7.8351 -8.8933 0.2760 18 1 8.0420 -9.1876 1.2944 19 6 8.3567 -9.6219 -0.7718 20 7 8.1051 -9.2632 -2.0118 21 14 9.4219 -11.1180 -0.4301 22 1 8.5641 -12.3268 -0.3421 23 1 10.4049 -11.2874 -1.5304 24 1 10.1438 -10.9288 0.8538 25 6 4.0769 -3.6002 0.4931 26 7 3.3350 -2.5504 0.2315 27 6 2.8079 -1.8056 1.1981 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 2.2924 -1.0812 4.4218 36 1 4.0066 -3.5231 3.8922 37 1 5.5085 -5.6269 0.1427 38 1 7.4059 -6.7633 1.8990 39 1 5.9564 -7.7964 1.8948 40 1 5.1244 -7.2363 -1.0043 41 1 6.0642 -8.5514 -1.7490 42 1 5.1729 -8.8408 -0.2353 43 1 8.6570 -6.3576 -0.2252 44 1 8.0984 -7.1015 -1.7431 45 1 7.1589 -5.7861 -0.9984 46 1 8.4718 -9.7761 -2.7490 47 1 4.4849 -4.1763 -0.3242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457984850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:19 Heat of formation + Delta-G solvation = 38.991582 kcal Electronic energy + Delta-G solvation = -27713.691522 eV Core-core repulsion = 23897.103303 eV Total energy + Delta-G solvation = -3816.588219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.73744 -40.91307 -39.04263 -38.04026 -36.57827 -35.04779 -33.78697 -32.81277 -31.45369 -30.70543 -28.23453 -27.52310 -27.49299 -26.91957 -25.00515 -24.71132 -23.92818 -21.80939 -20.87914 -20.60836 -19.14934 -18.88120 -17.76233 -17.70144 -16.87731 -16.76794 -16.53643 -16.18115 -16.13001 -15.55250 -15.28622 -14.82845 -14.66674 -14.63844 -14.50211 -14.23976 -14.18125 -13.93696 -13.54357 -13.16951 -13.16273 -13.08419 -13.06717 -12.66520 -12.57929 -12.52055 -12.44206 -12.21988 -12.11319 -11.86204 -11.58249 -11.44650 -11.38312 -11.08477 -10.68566 -10.54889 -10.37173 -10.19827 -9.98283 -9.39244 -7.99528 -6.14752 -0.35049 -0.31185 1.02200 1.37670 1.44390 1.47669 1.55353 1.81929 2.22066 2.50310 2.72806 2.97428 3.15192 3.24401 3.50935 3.65540 3.73692 3.81803 3.93244 4.06176 4.15786 4.25378 4.36745 4.49015 4.56140 4.65073 4.69980 4.75571 4.77596 4.82212 4.91588 5.04690 5.06002 5.09488 5.14533 5.18088 5.21606 5.23873 5.37491 5.39364 5.59399 5.70901 5.71221 5.72089 6.19280 6.25133 6.31008 6.46662 6.61355 6.70852 6.89646 7.24167 7.52880 8.99291 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.002302 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.129278 B =12161.360206 C =12889.497912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.151 3.849 3 C -0.153 4.153 4 N -0.387 5.387 5 N -0.252 5.252 6 C 0.106 3.894 7 C -0.248 4.248 8 C 0.077 3.923 9 C -0.240 4.240 10 C 0.565 3.435 11 O -0.583 6.583 12 N -0.704 5.704 13 C 0.148 3.852 14 C 0.051 3.949 15 C -0.123 4.123 16 C -0.123 4.123 17 C -0.526 4.526 18 H 0.046 0.954 19 C 0.028 3.972 20 N -0.899 5.899 21 Si 0.943 3.057 22 H -0.280 1.280 23 H -0.284 1.284 24 H -0.276 1.276 25 C 0.208 3.792 26 N -0.517 5.517 27 C 0.310 3.690 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.047 0.953 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.243 0.757 36 H 0.164 0.836 37 H 0.407 0.593 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.259 0.741 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.603 20.555 3.622 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.051 3.949 3 C -0.210 4.210 4 N -0.177 5.177 5 N -0.063 5.063 6 C -0.093 4.093 7 C -0.258 4.258 8 C 0.049 3.951 9 C -0.248 4.248 10 C 0.353 3.647 11 O -0.465 6.465 12 N -0.356 5.356 13 C 0.024 3.976 14 C 0.050 3.950 15 C -0.181 4.181 16 C -0.181 4.181 17 C -0.565 4.565 18 H 0.064 0.936 19 C -0.172 4.172 20 N -0.538 5.538 21 Si 0.770 3.230 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.201 1.201 25 C 0.038 3.962 26 N -0.232 5.232 27 C 0.071 3.929 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.259 0.741 36 H 0.182 0.818 37 H 0.245 0.755 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -15.428 21.727 3.090 26.825 hybrid contribution 1.466 -2.079 0.500 2.592 sum -13.962 19.648 3.590 24.369 Atomic orbital electron populations 1.22093 0.92218 1.02412 1.04317 1.21626 0.96255 0.94238 0.82755 1.22095 1.00956 0.93679 1.04316 1.48821 1.41973 1.21360 1.05521 1.76647 1.20499 1.22185 0.86956 1.25784 0.92674 0.89276 1.01525 1.20678 1.09009 1.02040 0.94121 1.21303 0.85798 0.87469 1.00564 1.20544 1.07848 1.00591 0.95803 1.18158 0.79258 0.82565 0.84739 1.90730 1.62079 1.71313 1.22397 1.46019 1.51010 1.29124 1.09401 1.21340 0.92225 0.85227 0.98795 1.18365 0.93347 0.93243 0.90013 1.21699 0.96227 0.98523 1.01662 1.21699 0.98192 0.96561 1.01660 1.21275 1.31067 1.11649 0.92464 0.93572 1.25437 0.97181 0.99470 0.95090 1.69904 1.45459 1.40042 0.98390 0.85789 0.78974 0.80613 0.77594 1.20591 1.21010 1.20050 1.23124 0.88477 0.89381 0.95239 1.66715 1.13879 1.07603 1.34975 1.19517 0.92475 0.89849 0.91098 0.88135 0.93373 0.91615 0.87642 0.93378 0.88130 0.91623 0.74057 0.81823 0.75489 0.93823 0.93792 0.94325 0.91896 0.96176 0.96165 0.91900 0.94319 0.93097 0.79766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.43 71.98 0.68 -1.23 16 2 C 0.15 2.39 3.67 44.99 0.16 2.56 16 3 C -0.15 -1.92 9.43 71.98 0.68 -1.24 16 4 N -0.39 -8.12 3.31 -324.42 -1.07 -9.20 16 5 N -0.25 -4.89 12.20 -53.08 -0.65 -5.54 16 6 C 0.11 1.72 12.30 86.94 1.07 2.79 16 7 C -0.25 -5.41 6.36 -20.24 -0.13 -5.54 16 8 C 0.08 1.80 9.76 22.92 0.22 2.02 16 9 C -0.24 -6.35 5.89 -20.00 -0.12 -6.47 16 10 C 0.57 18.66 7.77 86.74 0.67 19.34 16 11 O -0.58 -23.23 16.40 -3.95 -0.06 -23.29 16 12 N -0.70 -23.39 4.91 -466.11 -2.29 -25.68 16 13 C 0.15 6.05 4.50 86.38 0.39 6.44 16 14 C 0.05 2.29 0.50 -52.93 -0.03 2.26 16 15 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 16 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 17 C -0.53 -27.25 8.01 25.60 0.21 -27.05 16 18 H 0.05 2.44 7.74 -2.91 -0.02 2.41 16 19 C 0.03 1.45 5.15 84.65 0.44 1.89 16 20 N -0.90 -47.36 9.35 21.45 0.20 -47.16 16 21 Si 0.94 42.19 29.54 68.60 2.03 44.21 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 C 0.21 4.99 10.69 85.26 0.91 5.91 16 26 N -0.52 -13.02 10.35 -191.96 -1.99 -15.01 16 27 C 0.31 7.56 7.91 134.18 1.06 8.62 16 28 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 1.72 8.04 -2.39 -0.02 1.70 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.24 1.63 8.06 -2.91 -0.02 1.60 16 36 H 0.16 3.39 7.72 -2.91 -0.02 3.37 16 37 H 0.41 11.60 4.20 -92.71 -0.39 11.21 16 38 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 41 H 0.06 3.04 6.07 -2.38 -0.01 3.03 16 42 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 3.04 6.07 -2.38 -0.01 3.02 16 45 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 46 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 47 H 0.19 3.61 6.39 -2.91 -0.02 3.59 16 Total: -1.00 -64.94 382.65 4.15 -60.79 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.60 Total: 20.06 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 7.38 Total: 0.81 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -5.80 Total: -102.58 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.06 Total: -23.29 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -64.94 4.15 -60.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457984850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.786 kcal (2) G-P(sol) polarization free energy of solvation -64.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds