Wall clock time and date at job start Tue Mar 31 2020 15:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47495 * 2 1 4 4 N 1.46494 * 109.47271 * 120.00417 * 2 1 3 5 5 C 1.38423 * 126.37697 * 120.16155 * 4 2 1 6 6 C 1.38704 * 133.92217 * 359.90399 * 5 4 2 7 7 C 1.37932 * 119.84611 * 180.34600 * 6 5 4 8 8 C 1.38721 * 120.44049 * 0.02562 * 7 6 5 9 9 C 1.37657 * 120.51316 * 0.02562 * 8 7 6 10 10 C 1.39739 * 119.77137 * 359.97438 * 9 8 7 11 11 N 1.35842 * 133.42339 * 179.97438 * 10 9 8 12 12 C 1.30850 * 109.62573 * 180.02562 * 11 10 9 13 13 N 1.38461 * 125.05111 * 179.97438 * 12 11 10 14 14 C 1.34781 * 120.00226 * 0.03130 * 13 12 11 15 15 O 1.21261 * 119.99748 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00261 * 180.02562 * 14 13 12 17 17 H 1.09005 * 109.47168 * 319.99959 * 16 14 13 18 18 N 1.46901 * 109.47231 * 199.99856 * 16 14 13 19 19 C 1.53006 * 109.47471 * 79.99562 * 16 14 13 20 20 C 1.52999 * 109.46997 * 185.00271 * 19 16 14 21 21 C 1.50706 * 109.46573 * 180.02562 * 20 19 16 22 22 H 1.07995 * 120.00167 * 359.72054 * 21 20 19 23 23 C 1.37879 * 119.99394 * 179.97438 * 21 20 19 24 24 N 1.31514 * 120.00338 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99424 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47487 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47233 * 120.00158 * 25 23 21 28 28 H 1.48508 * 109.46883 * 239.99963 * 25 23 21 29 29 H 1.08993 * 109.46556 * 299.99920 * 1 2 3 30 30 H 1.08995 * 109.46817 * 59.99902 * 1 2 3 31 31 H 1.09001 * 109.46978 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46942 * 240.00181 * 2 1 3 33 33 H 1.09002 * 109.47154 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46819 * 300.00271 * 3 2 1 35 35 H 1.09001 * 109.46562 * 60.00327 * 3 2 1 36 36 H 1.08003 * 120.07408 * 0.36806 * 6 5 4 37 37 H 1.08000 * 119.77325 * 180.02562 * 7 6 5 38 38 H 1.08004 * 119.74597 * 179.97438 * 8 7 6 39 39 H 1.07990 * 120.11798 * 180.02562 * 9 8 7 40 40 H 0.97005 * 120.00132 * 180.02562 * 13 12 11 41 41 H 1.00899 * 110.99814 * 176.04311 * 18 16 14 42 42 H 1.00892 * 110.99802 * 299.99727 * 18 16 14 43 43 H 1.09000 * 109.46866 * 65.00059 * 19 16 14 44 44 H 1.09001 * 109.46611 * 305.00176 * 19 16 14 45 45 H 1.09000 * 109.47486 * 60.00167 * 20 19 16 46 46 H 1.09001 * 109.47362 * 299.99445 * 20 19 16 47 47 H 0.96996 * 119.99730 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8200 -1.8188 1.2228 6 6 3.3883 -2.6188 0.2426 7 6 4.1535 -3.7081 0.6038 8 6 4.3585 -4.0101 1.9422 9 6 3.8014 -3.2281 2.9285 10 6 3.0236 -2.1208 2.5796 11 7 2.3576 -1.1826 3.3018 12 6 1.7690 -0.3405 2.4916 13 7 1.0027 0.7420 2.8893 14 6 0.8184 0.9918 4.2009 15 8 1.3234 0.2682 5.0326 16 6 -0.0160 2.1696 4.6337 17 1 0.1949 3.0215 3.9872 18 7 0.3104 2.5167 6.0233 19 6 -1.4994 1.8082 4.5332 20 6 -2.3474 3.0411 4.8524 21 6 -3.8084 2.6849 4.7540 22 1 -4.1026 1.6809 4.4859 23 6 -4.7695 3.6421 5.0012 24 7 -4.4112 4.8661 5.3224 25 14 -6.5804 3.2004 4.8800 26 1 -6.7171 1.7702 4.5050 27 1 -7.2357 3.4334 6.1921 28 1 -7.2282 4.0469 3.8459 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 3.2324 -2.3890 -0.8011 37 1 4.5958 -4.3299 -0.1604 38 1 4.9593 -4.8660 2.2124 39 1 3.9655 -3.4688 3.9684 40 1 0.5985 1.3208 2.2239 41 1 -0.1888 3.3432 6.3163 42 1 0.1233 1.7427 6.6428 43 1 -1.7291 1.0151 5.2448 44 1 -1.7222 1.4656 3.5227 45 1 -2.1177 3.8342 4.1408 46 1 -2.1246 3.3837 5.8629 47 1 -5.0873 5.5396 5.4959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565432454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:07 Heat of formation + Delta-G solvation = 40.939589 kcal Electronic energy + Delta-G solvation = -28285.017028 eV Core-core repulsion = 24468.513282 eV Total energy + Delta-G solvation = -3816.503747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.40938 -39.81108 -37.75890 -36.08254 -35.54745 -34.55102 -32.91974 -31.94477 -29.99051 -29.64156 -28.97927 -27.77986 -26.79758 -24.53087 -23.30598 -22.70847 -22.42370 -20.81333 -19.99740 -19.93199 -18.02162 -17.36434 -17.12571 -16.55687 -16.21476 -16.01874 -15.05836 -14.91362 -14.66080 -14.59198 -14.46881 -14.46640 -14.12465 -13.92458 -13.63313 -13.27130 -13.12313 -12.80029 -12.74269 -12.27472 -12.12660 -12.11308 -11.91508 -11.71000 -11.68067 -11.40147 -11.17070 -11.00806 -10.72607 -10.53228 -10.19436 -10.15743 -10.07725 -9.72237 -9.34908 -9.26745 -8.50408 -8.31499 -8.29221 -7.85092 -6.14572 -4.17857 0.88782 1.40812 1.94794 2.43920 2.90991 3.13088 3.22130 3.30672 3.34377 3.85031 4.07849 4.15480 4.34363 4.42921 4.51968 4.61832 4.81467 4.87118 5.01241 5.02681 5.04713 5.17761 5.21856 5.23403 5.25839 5.38212 5.39724 5.41185 5.55906 5.58977 5.64058 5.68282 5.91469 6.02247 6.14632 6.25491 6.40155 6.41694 6.48169 6.70173 6.76325 7.04264 7.06595 7.39897 7.45090 7.53652 7.80631 7.82596 7.98263 8.23227 8.26410 8.88203 9.47588 10.96285 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.002717 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.123683 B =10303.509018 C =10883.412163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.130 3.870 3 C -0.170 4.170 4 N -0.501 5.501 5 C 0.046 3.954 6 C -0.107 4.107 7 C -0.114 4.114 8 C -0.128 4.128 9 C -0.070 4.070 10 C 0.067 3.933 11 N -0.479 5.479 12 C 0.518 3.482 13 N -0.645 5.645 14 C 0.520 3.480 15 O -0.459 6.459 16 C 0.083 3.917 17 H 0.100 0.900 18 N -0.829 5.829 19 C -0.139 4.139 20 C 0.025 3.975 21 C -0.524 4.524 22 H 0.055 0.945 23 C 0.059 3.941 24 N -0.892 5.892 25 Si 0.892 3.108 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.283 1.283 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.416 0.584 41 H 0.358 0.642 42 H 0.348 0.652 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.019 0.981 46 H 0.020 0.980 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.533 -10.898 -14.614 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.027 3.973 3 C -0.228 4.228 4 N -0.199 5.199 5 C -0.061 4.061 6 C -0.128 4.128 7 C -0.134 4.134 8 C -0.148 4.148 9 C -0.089 4.089 10 C -0.052 4.052 11 N -0.205 5.205 12 C 0.165 3.835 13 N -0.301 5.301 14 C 0.305 3.695 15 O -0.324 6.324 16 C -0.032 4.032 17 H 0.118 0.882 18 N -0.362 5.362 19 C -0.179 4.179 20 C -0.013 4.013 21 C -0.563 4.563 22 H 0.074 0.926 23 C -0.143 4.143 24 N -0.531 5.531 25 Si 0.720 3.280 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.209 1.209 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.256 0.744 41 H 0.174 0.826 42 H 0.162 0.838 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.462 -10.992 -13.329 23.864 hybrid contribution -2.406 0.108 -1.270 2.723 sum 14.056 -10.884 -14.599 23.004 Atomic orbital electron populations 1.22305 0.93042 1.03834 1.03774 1.21468 0.95471 0.93862 0.86456 1.22298 1.02599 0.94316 1.03605 1.45399 1.44319 1.24792 1.05395 1.18663 0.99281 0.90857 0.97306 1.19824 1.00363 0.95708 0.96903 1.20776 0.99352 0.96892 0.96342 1.20833 1.01395 1.00195 0.92402 1.20262 0.96167 0.92455 1.00064 1.19077 1.00526 0.97008 0.88606 1.71122 1.15817 1.05212 1.28361 1.19647 0.93826 0.90581 0.79477 1.43279 1.50393 1.26368 1.10094 1.21282 0.80809 0.87166 0.80217 1.90788 1.44814 1.46861 1.49962 1.21440 0.93857 0.94357 0.93592 0.88186 1.58712 1.65418 1.10832 1.01244 1.22441 0.91526 1.02226 1.01716 1.19113 0.93915 0.91111 0.97113 1.21197 0.91036 0.96617 1.47404 0.92636 1.25008 0.99222 0.94983 0.95063 1.69952 1.33631 1.02393 1.47129 0.86533 0.85119 0.78565 0.77794 1.19745 1.20882 1.20941 0.91732 0.89618 0.91245 0.87722 0.91322 0.89649 0.91919 0.86442 0.85569 0.85532 0.85341 0.74444 0.82562 0.83803 0.92242 0.92623 0.96241 0.96202 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.19 37.16 0.34 -0.99 16 2 C 0.13 1.05 3.44 -67.93 -0.23 0.81 16 3 C -0.17 -1.18 9.19 37.16 0.34 -0.84 16 4 N -0.50 -6.08 2.68 -107.88 -0.29 -6.37 16 5 C 0.05 0.60 6.87 -83.87 -0.58 0.02 16 6 C -0.11 -1.07 9.88 -39.52 -0.39 -1.46 16 7 C -0.11 -1.02 10.03 -39.52 -0.40 -1.41 16 8 C -0.13 -1.25 10.01 -39.62 -0.40 -1.64 16 9 C -0.07 -0.89 10.10 -39.23 -0.40 -1.28 16 10 C 0.07 1.03 7.22 -84.69 -0.61 0.42 16 11 N -0.48 -8.66 9.36 -11.42 -0.11 -8.77 16 12 C 0.52 7.95 7.77 -319.44 -2.48 5.47 16 13 N -0.65 -9.08 4.69 -12.60 -0.06 -9.14 16 14 C 0.52 8.81 7.04 -10.99 -0.08 8.73 16 15 O -0.46 -9.44 14.87 5.57 0.08 -9.36 16 16 C 0.08 1.35 3.21 -68.86 -0.22 1.13 16 17 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 18 N -0.83 -13.76 8.94 -5.65 -0.05 -13.81 16 19 C -0.14 -2.60 4.78 -26.73 -0.13 -2.73 16 20 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 21 C -0.52 -13.95 9.11 -34.44 -0.31 -14.27 16 22 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 24 N -0.89 -25.37 13.29 55.43 0.74 -24.64 16 25 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H 0.06 0.57 5.86 -51.93 -0.30 0.27 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.65 7.61 -51.92 -0.40 0.26 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.48 5.86 -51.93 -0.30 0.18 16 36 H 0.12 0.87 7.74 -52.48 -0.41 0.46 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 39 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.42 4.57 4.79 -40.82 -0.20 4.38 16 41 H 0.36 5.87 7.55 -39.29 -0.30 5.57 16 42 H 0.35 5.91 8.58 -39.30 -0.34 5.57 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.48 6.87 -51.93 -0.36 0.12 16 47 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 382.95 15.07 5.77 5.77 Total: -1.00 -34.12 382.95 -11.49 -45.61 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.79 Total: 10.96 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -5.77 Total: -6.08 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.23 Total: -62.74 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.12 -11.49 -45.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565432454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.549 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds