Wall clock time and date at job start Tue Mar 31 2020 15:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47495 * 2 1 4 4 N 1.46494 * 109.47271 * 120.00417 * 2 1 3 5 5 C 1.38423 * 126.37697 * 120.16155 * 4 2 1 6 6 C 1.38704 * 133.92217 * 359.90399 * 5 4 2 7 7 C 1.37932 * 119.84611 * 180.34600 * 6 5 4 8 8 C 1.38721 * 120.44049 * 0.02562 * 7 6 5 9 9 C 1.37657 * 120.51316 * 0.02562 * 8 7 6 10 10 C 1.39739 * 119.77137 * 359.97438 * 9 8 7 11 11 N 1.35842 * 133.42339 * 179.97438 * 10 9 8 12 12 C 1.30850 * 109.62573 * 180.02562 * 11 10 9 13 13 N 1.38461 * 125.05111 * 179.97438 * 12 11 10 14 14 C 1.34781 * 120.00226 * 0.03130 * 13 12 11 15 15 O 1.21261 * 119.99748 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00261 * 180.02562 * 14 13 12 17 17 H 1.09005 * 109.47168 * 319.99959 * 16 14 13 18 18 N 1.46901 * 109.47231 * 199.99856 * 16 14 13 19 19 C 1.53006 * 109.47471 * 79.99562 * 16 14 13 20 20 C 1.52999 * 109.46997 * 185.00271 * 19 16 14 21 21 C 1.50706 * 109.46573 * 180.02562 * 20 19 16 22 22 H 1.07995 * 120.00167 * 359.72054 * 21 20 19 23 23 C 1.37879 * 119.99394 * 179.97438 * 21 20 19 24 24 N 1.31514 * 120.00338 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99424 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47487 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47233 * 120.00158 * 25 23 21 28 28 H 1.48508 * 109.46883 * 239.99963 * 25 23 21 29 29 H 1.08993 * 109.46556 * 299.99920 * 1 2 3 30 30 H 1.08995 * 109.46817 * 59.99902 * 1 2 3 31 31 H 1.09001 * 109.46978 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46942 * 240.00181 * 2 1 3 33 33 H 1.09002 * 109.47154 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46819 * 300.00271 * 3 2 1 35 35 H 1.09001 * 109.46562 * 60.00327 * 3 2 1 36 36 H 1.08003 * 120.07408 * 0.36806 * 6 5 4 37 37 H 1.08000 * 119.77325 * 180.02562 * 7 6 5 38 38 H 1.08004 * 119.74597 * 179.97438 * 8 7 6 39 39 H 1.07990 * 120.11798 * 180.02562 * 9 8 7 40 40 H 0.97005 * 120.00132 * 180.02562 * 13 12 11 41 41 H 1.00899 * 110.99814 * 176.04311 * 18 16 14 42 42 H 1.00892 * 110.99802 * 299.99727 * 18 16 14 43 43 H 1.09000 * 109.46866 * 65.00059 * 19 16 14 44 44 H 1.09001 * 109.46611 * 305.00176 * 19 16 14 45 45 H 1.09000 * 109.47486 * 60.00167 * 20 19 16 46 46 H 1.09001 * 109.47362 * 299.99445 * 20 19 16 47 47 H 0.96996 * 119.99730 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8200 -1.8188 1.2228 6 6 3.3883 -2.6188 0.2426 7 6 4.1535 -3.7081 0.6038 8 6 4.3585 -4.0101 1.9422 9 6 3.8014 -3.2281 2.9285 10 6 3.0236 -2.1208 2.5796 11 7 2.3576 -1.1826 3.3018 12 6 1.7690 -0.3405 2.4916 13 7 1.0027 0.7420 2.8893 14 6 0.8184 0.9918 4.2009 15 8 1.3234 0.2682 5.0326 16 6 -0.0160 2.1696 4.6337 17 1 0.1949 3.0215 3.9872 18 7 0.3104 2.5167 6.0233 19 6 -1.4994 1.8082 4.5332 20 6 -2.3474 3.0411 4.8524 21 6 -3.8084 2.6849 4.7540 22 1 -4.1026 1.6809 4.4859 23 6 -4.7695 3.6421 5.0012 24 7 -4.4112 4.8661 5.3224 25 14 -6.5804 3.2004 4.8800 26 1 -6.7171 1.7702 4.5050 27 1 -7.2357 3.4334 6.1921 28 1 -7.2282 4.0469 3.8459 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 3.2324 -2.3890 -0.8011 37 1 4.5958 -4.3299 -0.1604 38 1 4.9593 -4.8660 2.2124 39 1 3.9655 -3.4688 3.9684 40 1 0.5985 1.3208 2.2239 41 1 -0.1888 3.3432 6.3163 42 1 0.1233 1.7427 6.6428 43 1 -1.7291 1.0151 5.2448 44 1 -1.7222 1.4656 3.5227 45 1 -2.1177 3.8342 4.1408 46 1 -2.1246 3.3837 5.8629 47 1 -5.0873 5.5396 5.4959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565432454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:06 Heat of formation + Delta-G solvation = 20.585154 kcal Electronic energy + Delta-G solvation = -28285.899663 eV Core-core repulsion = 24468.513282 eV Total energy + Delta-G solvation = -3817.386381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.37579 -41.10351 -38.62663 -37.25215 -36.71504 -35.75588 -34.85882 -32.77572 -31.72922 -30.49019 -29.97734 -28.34362 -28.30419 -26.18533 -24.15906 -23.86456 -23.37010 -22.32336 -21.20377 -20.94352 -19.21030 -18.43579 -18.28456 -18.00042 -17.40525 -17.08525 -16.55365 -16.10643 -15.89797 -15.84100 -15.65967 -15.35905 -15.16062 -14.81817 -14.77338 -14.68673 -14.30227 -14.06626 -13.53361 -13.41311 -13.35893 -13.01941 -12.91092 -12.85371 -12.75178 -12.56030 -12.51037 -12.38941 -12.12529 -11.85237 -11.77909 -11.42442 -11.30316 -11.25328 -11.11470 -10.60221 -10.56616 -9.73162 -9.14566 -8.85978 -8.22168 -6.31804 -0.03398 0.55895 0.94209 1.23923 1.37819 1.40534 1.51427 1.95866 2.02037 2.39321 2.94582 3.11901 3.14791 3.44155 3.52978 3.65425 3.82632 3.96692 3.99308 4.02592 4.11161 4.13491 4.29960 4.36033 4.46613 4.51264 4.59039 4.63249 4.71652 4.72951 4.76416 4.81098 4.91560 5.04203 5.09002 5.11672 5.24189 5.41342 5.46205 5.59615 5.61768 5.64292 5.77775 5.80422 6.01513 6.06512 6.17762 6.20547 6.42956 6.83321 6.84880 7.09134 7.37306 8.88648 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.002717 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.123683 B =10303.509018 C =10883.412163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 C -0.168 4.168 4 N -0.490 5.490 5 C 0.037 3.963 6 C -0.106 4.106 7 C -0.103 4.103 8 C -0.118 4.118 9 C -0.097 4.097 10 C 0.019 3.981 11 N -0.532 5.532 12 C 0.497 3.503 13 N -0.630 5.630 14 C 0.524 3.476 15 O -0.501 6.501 16 C 0.093 3.907 17 H 0.122 0.878 18 N -0.829 5.829 19 C -0.123 4.123 20 C 0.031 3.969 21 C -0.543 4.543 22 H 0.053 0.947 23 C 0.008 3.992 24 N -0.925 5.925 25 Si 0.956 3.044 26 H -0.267 1.267 27 H -0.281 1.281 28 H -0.276 1.276 29 H 0.048 0.952 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.132 0.868 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.050 0.950 36 H 0.151 0.849 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.120 0.880 40 H 0.429 0.571 41 H 0.359 0.641 42 H 0.345 0.655 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.009 0.991 46 H 0.005 0.995 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.896 -11.991 -18.007 26.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.023 3.977 3 C -0.226 4.226 4 N -0.187 5.187 5 C -0.070 4.070 6 C -0.127 4.127 7 C -0.122 4.122 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.099 4.099 11 N -0.260 5.260 12 C 0.143 3.857 13 N -0.287 5.287 14 C 0.309 3.691 15 O -0.370 6.370 16 C -0.022 4.022 17 H 0.140 0.860 18 N -0.362 5.362 19 C -0.162 4.162 20 C -0.006 4.006 21 C -0.581 4.581 22 H 0.071 0.929 23 C -0.191 4.191 24 N -0.565 5.565 25 Si 0.781 3.219 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.202 1.202 29 H 0.067 0.933 30 H 0.132 0.868 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.069 0.931 36 H 0.169 0.831 37 H 0.185 0.815 38 H 0.175 0.825 39 H 0.138 0.862 40 H 0.272 0.728 41 H 0.175 0.825 42 H 0.159 0.841 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.027 0.973 46 H 0.023 0.977 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.825 -12.080 -16.788 26.661 hybrid contribution -2.421 0.346 -0.291 2.463 sum 14.403 -11.734 -17.079 25.235 Atomic orbital electron populations 1.22325 0.92779 1.03317 1.04362 1.21865 0.95692 0.94505 0.85658 1.22316 1.02186 0.93656 1.04403 1.45568 1.43519 1.24470 1.05177 1.19048 0.99620 0.91363 0.97018 1.20294 0.99421 0.95101 0.97856 1.21318 0.97771 0.96381 0.96735 1.21237 1.00176 0.99989 0.92371 1.20481 0.97394 0.93059 1.00776 1.19513 1.02240 0.98017 0.90083 1.70937 1.17237 1.06796 1.31014 1.19594 0.94527 0.90757 0.80830 1.42963 1.49933 1.26350 1.09452 1.21269 0.80345 0.86614 0.80828 1.90772 1.46705 1.48145 1.51367 1.21358 0.92078 0.94916 0.93863 0.86007 1.58721 1.65278 1.10730 1.01451 1.22184 0.92506 0.99675 1.01878 1.18970 0.93256 0.92454 0.95924 1.21617 0.92919 0.96539 1.47030 0.92870 1.25810 1.03541 0.94934 0.94825 1.70052 1.35018 1.03294 1.48094 0.85535 0.79996 0.78524 0.77818 1.19169 1.20726 1.20154 0.93286 0.86781 0.92322 0.85051 0.91955 0.86770 0.93104 0.83106 0.81515 0.82526 0.86207 0.72795 0.82493 0.84143 0.93678 0.91394 0.97275 0.97678 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.19 71.98 0.66 -1.64 16 2 C 0.12 1.72 3.44 44.99 0.15 1.87 16 3 C -0.17 -1.97 9.19 71.98 0.66 -1.31 16 4 N -0.49 -11.59 2.68 -495.23 -1.33 -12.92 16 5 C 0.04 0.94 6.87 38.76 0.27 1.20 16 6 C -0.11 -1.78 9.88 22.31 0.22 -1.56 16 7 C -0.10 -1.44 10.03 22.31 0.22 -1.22 16 8 C -0.12 -2.05 10.01 22.25 0.22 -1.83 16 9 C -0.10 -2.55 10.10 22.50 0.23 -2.32 16 10 C 0.02 0.63 7.22 39.43 0.28 0.91 16 11 N -0.53 -20.41 9.36 -190.03 -1.78 -22.18 16 12 C 0.50 15.72 7.77 260.31 2.02 17.74 16 13 N -0.63 -18.14 4.69 -312.16 -1.46 -19.60 16 14 C 0.52 18.32 7.04 87.65 0.62 18.94 16 15 O -0.50 -21.72 14.87 -2.97 -0.04 -21.76 16 16 C 0.09 3.07 3.21 44.17 0.14 3.21 16 17 H 0.12 3.47 8.14 -2.38 -0.02 3.45 16 18 N -0.83 -28.28 8.94 -171.79 -1.54 -29.81 16 19 C -0.12 -4.63 4.78 30.60 0.15 -4.49 16 20 C 0.03 1.46 4.74 29.85 0.14 1.61 16 21 C -0.54 -29.06 9.11 25.60 0.23 -28.83 16 22 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 23 C 0.01 0.41 5.46 84.66 0.46 0.88 16 24 N -0.92 -52.94 13.29 21.45 0.28 -52.66 16 25 Si 0.96 42.67 29.54 68.60 2.03 44.70 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 28 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 29 H 0.05 0.82 5.86 -2.39 -0.01 0.80 16 30 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.13 1.14 7.61 -2.38 -0.02 1.12 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.05 0.72 5.86 -2.39 -0.01 0.71 16 36 H 0.15 1.48 7.74 -2.91 -0.02 1.46 16 37 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 38 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.12 3.13 8.06 -2.92 -0.02 3.11 16 40 H 0.43 9.38 4.79 -92.70 -0.44 8.93 16 41 H 0.36 12.07 7.55 -89.69 -0.68 11.39 16 42 H 0.35 12.23 8.58 -89.70 -0.77 11.46 16 43 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.00 0.25 6.87 -2.39 -0.02 0.23 16 47 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -77.38 382.95 1.97 -75.41 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -0.87 Total: 35.66 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 6.69 Total: 3.17 kcal Atomic # 7 Polarization: -131.36 SS G_CDS: -5.82 Total: -137.18 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.04 Total: -21.76 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -77.38 1.97 -75.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565432454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.996 kcal (2) G-P(sol) polarization free energy of solvation -77.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds