Wall clock time and date at job start Tue Mar 31 2020 15:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47014 * 2 1 4 4 N 1.46505 * 109.47079 * 119.99432 * 2 1 3 5 5 C 1.37498 * 127.18463 * 306.54846 * 4 2 1 6 6 C 1.47915 * 126.47341 * 0.02562 * 5 4 2 7 7 C 1.46838 * 127.13705 * 163.59731 * 6 5 4 8 8 C 1.34327 * 106.02324 * 179.83011 * 7 6 5 9 9 O 1.34168 * 109.04807 * 0.43101 * 8 7 6 10 10 C 1.34088 * 110.78047 * 359.71126 * 9 8 7 11 11 N 1.31240 * 107.04953 * 180.27803 * 5 4 2 12 12 N 1.28509 * 109.95780 * 359.73704 * 11 5 4 13 13 C 1.31225 * 110.10899 * 0.02562 * 12 11 5 14 14 N 1.38565 * 126.38024 * 179.97438 * 13 12 11 15 15 C 1.46852 * 110.99477 * 108.14226 * 14 13 12 16 16 C 1.53036 * 109.51768 * 174.16246 * 15 14 13 17 17 C 1.53119 * 109.28142 * 59.18158 * 16 15 14 18 18 C 1.50697 * 109.52468 * 182.43861 * 17 16 15 19 19 H 1.08000 * 120.00243 * 119.67889 * 18 17 16 20 20 C 1.37877 * 119.99857 * 299.68155 * 18 17 16 21 21 N 1.31507 * 120.00171 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99787 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47489 * 89.99986 * 22 20 18 24 24 H 1.48504 * 109.46817 * 210.00249 * 22 20 18 25 25 H 1.48502 * 109.47259 * 329.99462 * 22 20 18 26 26 C 1.53127 * 109.15670 * 302.34100 * 17 16 15 27 27 C 1.46841 * 110.99668 * 343.93510 * 14 13 12 28 28 H 1.08996 * 109.46938 * 299.99757 * 1 2 3 29 29 H 1.09000 * 109.46990 * 60.00399 * 1 2 3 30 30 H 1.08998 * 109.46437 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47236 * 239.99985 * 2 1 3 32 32 H 1.09003 * 109.47532 * 204.93809 * 3 2 1 33 33 H 1.09007 * 109.47008 * 324.93920 * 3 2 1 34 34 H 1.08997 * 109.47321 * 84.93789 * 3 2 1 35 35 H 1.07999 * 126.98931 * 359.97438 * 7 6 5 36 36 H 1.07995 * 125.47377 * 180.14605 * 8 7 6 37 37 H 1.08003 * 125.78667 * 179.97438 * 10 9 8 38 38 H 1.08996 * 109.46211 * 294.17726 * 15 14 13 39 39 H 1.08993 * 109.46561 * 54.14792 * 15 14 13 40 40 H 1.09001 * 109.50673 * 299.23148 * 16 15 14 41 41 H 1.09004 * 109.50301 * 179.11939 * 16 15 14 42 42 H 1.08996 * 109.52371 * 62.24537 * 17 16 15 43 43 H 0.97003 * 120.00221 * 180.02562 * 21 20 18 44 44 H 1.08989 * 109.50293 * 297.71186 * 26 17 16 45 45 H 1.08999 * 109.49896 * 177.59252 * 26 17 16 46 46 H 1.09000 * 109.46302 * 305.84568 * 27 14 13 47 47 H 1.08992 * 109.46903 * 65.82258 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.6803 -0.4287 2.5031 6 6 0.7443 0.6138 2.9773 7 6 0.1150 0.7046 4.3009 8 6 -0.6468 1.8106 4.2742 9 8 -0.5436 2.3843 3.0658 10 6 0.2833 1.6842 2.2758 11 7 2.3493 -1.2750 3.2505 12 7 3.0682 -2.0409 2.5102 13 6 2.9030 -1.7308 1.2458 14 7 3.5158 -2.3407 0.1631 15 6 2.5575 -3.1573 -0.5927 16 6 3.2303 -3.6961 -1.8572 17 6 4.4471 -4.5378 -1.4630 18 6 5.1487 -5.0218 -2.7058 19 1 6.1763 -4.7442 -2.8887 20 6 4.4787 -5.8190 -3.6095 21 7 3.2276 -6.1574 -3.3866 22 14 5.3486 -6.4195 -5.1497 23 1 6.0092 -7.7197 -4.8701 24 1 4.3577 -6.5924 -6.2422 25 1 6.3703 -5.4235 -5.5613 26 6 5.4066 -3.6775 -0.6359 27 6 4.6707 -3.1392 0.5933 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.0397 1.4745 -0.4333 33 1 1.3680 2.0654 -0.5904 34 1 2.0756 1.8153 1.0236 35 1 0.2411 0.0222 5.1285 36 1 -1.2494 2.1764 5.0923 37 1 0.5396 1.9285 1.2555 38 1 2.2245 -3.9913 0.0251 39 1 1.6990 -2.5459 -0.8704 40 1 3.5512 -2.8627 -2.4821 41 1 2.5234 -4.3150 -2.4100 42 1 4.1220 -5.3931 -0.8707 43 1 2.7564 -6.7185 -4.0222 44 1 5.7618 -2.8438 -1.2415 45 1 6.2546 -4.2830 -0.3162 46 1 5.3470 -2.5146 1.1767 47 1 4.3279 -3.9733 1.2054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580993827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:02 Heat of formation + Delta-G solvation = 114.378590 kcal Electronic energy + Delta-G solvation = -29176.550986 eV Core-core repulsion = 25363.231794 eV Total energy + Delta-G solvation = -3813.319193 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.06260 -42.41913 -38.41257 -37.06370 -34.30790 -33.30510 -31.83985 -31.26628 -30.26073 -30.10922 -28.50722 -27.73770 -25.81656 -23.94526 -22.94198 -22.61742 -22.15887 -21.78067 -20.55787 -19.49447 -18.78497 -18.23632 -16.86869 -16.44966 -16.35427 -16.02522 -15.92214 -15.68449 -14.59411 -14.32572 -14.25405 -13.95096 -13.61325 -13.44346 -13.10604 -13.03845 -12.92663 -12.83999 -12.63376 -12.55278 -12.38677 -11.84208 -11.64229 -11.42137 -11.12907 -11.09172 -10.97745 -10.59580 -10.55325 -10.40770 -10.34331 -10.18497 -10.04343 -9.64616 -9.32835 -9.09139 -8.88196 -8.72720 -8.37741 -7.83353 -6.04506 -4.09728 1.07167 1.77024 2.18668 2.46143 2.74848 3.20642 3.27734 3.34840 3.37946 3.95309 4.10537 4.19865 4.37561 4.40181 4.53295 4.62578 4.73970 5.06603 5.11457 5.14076 5.24354 5.25657 5.30090 5.33701 5.40281 5.58278 5.61914 5.68442 5.74905 5.80762 5.93099 5.94524 6.00274 6.06828 6.12998 6.20987 6.28435 6.51434 6.64361 6.71944 6.77448 6.88835 7.01092 7.26427 7.29423 7.55296 7.67993 7.91940 8.02051 8.38800 8.91033 8.93905 9.55322 11.02050 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.025496 B = 0.002857 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.956129 B = 9796.494468 C =10291.835237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.127 3.873 3 C -0.185 4.185 4 N -0.470 5.470 5 C 0.229 3.771 6 C -0.101 4.101 7 C -0.176 4.176 8 C -0.038 4.038 9 O -0.177 6.177 10 C -0.037 4.037 11 N -0.266 5.266 12 N -0.324 5.324 13 C 0.380 3.620 14 N -0.455 5.455 15 C 0.061 3.939 16 C -0.103 4.103 17 C 0.046 3.954 18 C -0.510 4.510 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.108 4.108 27 C 0.077 3.923 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.160 0.840 36 H 0.208 0.792 37 H 0.225 0.775 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.101 0.899 42 H 0.026 0.974 43 H 0.260 0.740 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.343 17.835 9.170 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.024 3.976 3 C -0.243 4.243 4 N -0.166 5.166 5 C -0.036 4.036 6 C -0.105 4.105 7 C -0.196 4.196 8 C -0.104 4.104 9 O -0.072 6.072 10 C -0.107 4.107 11 N -0.107 5.107 12 N -0.170 5.170 13 C 0.025 3.975 14 N -0.179 5.179 15 C -0.065 4.065 16 C -0.141 4.141 17 C 0.027 3.973 18 C -0.548 4.548 19 H 0.074 0.926 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.146 4.146 27 C -0.050 4.050 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.137 0.863 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.178 0.822 36 H 0.225 0.775 37 H 0.241 0.759 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.918 17.589 9.865 22.050 hybrid contribution -0.170 -0.544 -1.519 1.623 sum -9.088 17.045 8.346 21.042 Atomic orbital electron populations 1.22714 0.93287 1.04471 1.04386 1.21583 0.95317 0.93953 0.86732 1.22567 1.03690 0.94556 1.03443 1.46429 1.35943 1.26962 1.07231 1.21364 1.01584 1.00581 0.80048 1.18732 1.01090 0.95118 0.95541 1.22775 0.99808 0.99846 0.97147 1.23965 1.03832 0.95399 0.87205 1.83938 1.53515 1.47703 1.22065 1.25243 0.95235 0.92787 0.97434 1.74260 1.06727 1.04047 1.25707 1.74657 1.22157 1.21400 0.98755 1.22915 0.91931 0.90163 0.92533 1.58889 1.08835 1.34121 1.16102 1.22531 0.92926 0.94030 0.97022 1.21753 1.00661 0.98922 0.92796 1.18724 0.91301 0.92740 0.94518 1.21167 0.98258 1.30150 1.05220 0.92556 1.24968 0.94900 0.95979 0.98144 1.69849 1.09823 1.36962 1.36532 0.86615 0.79399 0.79205 0.82905 1.20725 1.21311 1.19938 1.21767 0.98592 0.99567 0.94646 1.22133 0.89418 0.95168 0.98270 0.90115 0.89723 0.91281 0.86338 0.90300 0.89725 0.90732 0.82220 0.77521 0.75924 0.94092 0.92541 0.93412 0.88105 0.95608 0.93000 0.92276 0.92047 0.91293 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 8.65 37.16 0.32 -1.41 16 2 C 0.13 1.41 3.01 -67.93 -0.20 1.20 16 3 C -0.19 -1.55 8.07 37.16 0.30 -1.25 16 4 N -0.47 -6.99 2.68 -107.54 -0.29 -7.28 16 5 C 0.23 3.55 7.34 -153.82 -1.13 2.42 16 6 C -0.10 -1.23 5.70 -103.25 -0.59 -1.82 16 7 C -0.18 -1.82 11.15 -37.49 -0.42 -2.23 16 8 C -0.04 -0.29 12.04 29.35 0.35 0.06 16 9 O -0.18 -1.58 10.55 6.65 0.07 -1.51 16 10 C -0.04 -0.35 7.75 29.94 0.23 -0.12 16 11 N -0.27 -4.95 12.22 32.59 0.40 -4.55 16 12 N -0.32 -6.41 11.41 30.35 0.35 -6.06 16 13 C 0.38 6.83 6.92 -318.63 -2.20 4.63 16 14 N -0.45 -8.29 4.49 -174.50 -0.78 -9.07 16 15 C 0.06 1.15 5.16 -3.83 -0.02 1.13 16 16 C -0.10 -2.26 5.12 -26.65 -0.14 -2.40 16 17 C 0.05 1.08 2.16 -91.65 -0.20 0.89 16 18 C -0.51 -13.42 8.56 -34.44 -0.29 -13.72 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.63 5.31 -17.82 -0.09 1.53 16 21 N -0.89 -24.52 11.37 55.43 0.63 -23.89 16 22 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.11 -2.18 5.32 -26.64 -0.14 -2.33 16 27 C 0.08 1.44 4.85 -3.83 -0.02 1.42 16 28 H 0.08 0.72 3.63 -51.93 -0.19 0.53 16 29 H 0.08 0.55 8.12 -51.93 -0.42 0.12 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.12 1.42 6.58 -51.93 -0.34 1.08 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.45 7.74 -51.93 -0.40 0.05 16 34 H 0.07 0.66 5.06 -51.93 -0.26 0.40 16 35 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.23 1.66 3.26 -52.48 -0.17 1.49 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.95 6.57 -51.93 -0.34 0.61 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.10 2.47 6.18 -51.93 -0.32 2.15 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.06 1.19 8.14 -51.94 -0.42 0.77 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 47 H 0.05 0.98 8.11 -51.93 -0.42 0.56 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -31.15 363.19 -10.05 -41.20 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.64 Total: 2.00 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -4.24 Total: -12.00 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.30 Total: -50.85 kcal Atomic # 8 Polarization: -1.58 SS G_CDS: 0.07 Total: -1.51 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.15 -10.05 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580993827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.582 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds