Wall clock time and date at job start Tue Mar 31 2020 15:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47014 * 2 1 4 4 N 1.46505 * 109.47079 * 119.99432 * 2 1 3 5 5 C 1.37498 * 127.18463 * 306.54846 * 4 2 1 6 6 C 1.47915 * 126.47341 * 0.02562 * 5 4 2 7 7 C 1.46838 * 127.13705 * 163.59731 * 6 5 4 8 8 C 1.34327 * 106.02324 * 179.83011 * 7 6 5 9 9 O 1.34168 * 109.04807 * 0.43101 * 8 7 6 10 10 C 1.34088 * 110.78047 * 359.71126 * 9 8 7 11 11 N 1.31240 * 107.04953 * 180.27803 * 5 4 2 12 12 N 1.28509 * 109.95780 * 359.73704 * 11 5 4 13 13 C 1.31225 * 110.10899 * 0.02562 * 12 11 5 14 14 N 1.38565 * 126.38024 * 179.97438 * 13 12 11 15 15 C 1.46852 * 110.99477 * 108.14226 * 14 13 12 16 16 C 1.53036 * 109.51768 * 174.16246 * 15 14 13 17 17 C 1.53119 * 109.28142 * 59.18158 * 16 15 14 18 18 C 1.50697 * 109.52468 * 182.43861 * 17 16 15 19 19 H 1.08000 * 120.00243 * 119.67889 * 18 17 16 20 20 C 1.37877 * 119.99857 * 299.68155 * 18 17 16 21 21 N 1.31507 * 120.00171 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99787 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47489 * 89.99986 * 22 20 18 24 24 H 1.48504 * 109.46817 * 210.00249 * 22 20 18 25 25 H 1.48502 * 109.47259 * 329.99462 * 22 20 18 26 26 C 1.53127 * 109.15670 * 302.34100 * 17 16 15 27 27 C 1.46841 * 110.99668 * 343.93510 * 14 13 12 28 28 H 1.08996 * 109.46938 * 299.99757 * 1 2 3 29 29 H 1.09000 * 109.46990 * 60.00399 * 1 2 3 30 30 H 1.08998 * 109.46437 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47236 * 239.99985 * 2 1 3 32 32 H 1.09003 * 109.47532 * 204.93809 * 3 2 1 33 33 H 1.09007 * 109.47008 * 324.93920 * 3 2 1 34 34 H 1.08997 * 109.47321 * 84.93789 * 3 2 1 35 35 H 1.07999 * 126.98931 * 359.97438 * 7 6 5 36 36 H 1.07995 * 125.47377 * 180.14605 * 8 7 6 37 37 H 1.08003 * 125.78667 * 179.97438 * 10 9 8 38 38 H 1.08996 * 109.46211 * 294.17726 * 15 14 13 39 39 H 1.08993 * 109.46561 * 54.14792 * 15 14 13 40 40 H 1.09001 * 109.50673 * 299.23148 * 16 15 14 41 41 H 1.09004 * 109.50301 * 179.11939 * 16 15 14 42 42 H 1.08996 * 109.52371 * 62.24537 * 17 16 15 43 43 H 0.97003 * 120.00221 * 180.02562 * 21 20 18 44 44 H 1.08989 * 109.50293 * 297.71186 * 26 17 16 45 45 H 1.08999 * 109.49896 * 177.59252 * 26 17 16 46 46 H 1.09000 * 109.46302 * 305.84568 * 27 14 13 47 47 H 1.08992 * 109.46903 * 65.82258 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.6803 -0.4287 2.5031 6 6 0.7443 0.6138 2.9773 7 6 0.1150 0.7046 4.3009 8 6 -0.6468 1.8106 4.2742 9 8 -0.5436 2.3843 3.0658 10 6 0.2833 1.6842 2.2758 11 7 2.3493 -1.2750 3.2505 12 7 3.0682 -2.0409 2.5102 13 6 2.9030 -1.7308 1.2458 14 7 3.5158 -2.3407 0.1631 15 6 2.5575 -3.1573 -0.5927 16 6 3.2303 -3.6961 -1.8572 17 6 4.4471 -4.5378 -1.4630 18 6 5.1487 -5.0218 -2.7058 19 1 6.1763 -4.7442 -2.8887 20 6 4.4787 -5.8190 -3.6095 21 7 3.2276 -6.1574 -3.3866 22 14 5.3486 -6.4195 -5.1497 23 1 6.0092 -7.7197 -4.8701 24 1 4.3577 -6.5924 -6.2422 25 1 6.3703 -5.4235 -5.5613 26 6 5.4066 -3.6775 -0.6359 27 6 4.6707 -3.1392 0.5933 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.0397 1.4745 -0.4333 33 1 1.3680 2.0654 -0.5904 34 1 2.0756 1.8153 1.0236 35 1 0.2411 0.0222 5.1285 36 1 -1.2494 2.1764 5.0923 37 1 0.5396 1.9285 1.2555 38 1 2.2245 -3.9913 0.0251 39 1 1.6990 -2.5459 -0.8704 40 1 3.5512 -2.8627 -2.4821 41 1 2.5234 -4.3150 -2.4100 42 1 4.1220 -5.3931 -0.8707 43 1 2.7564 -6.7185 -4.0222 44 1 5.7618 -2.8438 -1.2415 45 1 6.2546 -4.2830 -0.3162 46 1 5.3470 -2.5146 1.1767 47 1 4.3279 -3.9733 1.2054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580993827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:01 Heat of formation + Delta-G solvation = 98.353280 kcal Electronic energy + Delta-G solvation = -29177.245896 eV Core-core repulsion = 25363.231794 eV Total energy + Delta-G solvation = -3814.014102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.18439 -43.30521 -40.01111 -38.02936 -36.01224 -34.34614 -33.33379 -32.58581 -31.76461 -31.13357 -29.79655 -28.42258 -27.64224 -25.07408 -24.53695 -23.77319 -23.51535 -22.83703 -21.77077 -20.49998 -20.37089 -19.21659 -18.48090 -17.92494 -17.36905 -17.22618 -16.95551 -16.59410 -16.48213 -15.75187 -15.39372 -14.98644 -14.77668 -14.63062 -14.48292 -14.37312 -14.18094 -13.85759 -13.75308 -13.52147 -13.38978 -13.27446 -13.00640 -12.82142 -12.60961 -12.53665 -12.38341 -12.16112 -12.08620 -11.95084 -11.70749 -11.60097 -11.42057 -11.22503 -10.91121 -10.76505 -10.41458 -10.37584 -9.77723 -9.12843 -8.08431 -6.20934 0.10606 0.90453 1.06242 1.35558 1.43059 1.44837 1.54168 2.03287 2.06186 2.44850 2.59441 3.16374 3.19578 3.33933 3.65013 3.74813 3.76484 3.78021 3.93008 4.02921 4.11342 4.28717 4.36708 4.40075 4.42271 4.46339 4.52449 4.57428 4.61594 4.65779 4.70869 4.81693 4.88260 4.91125 4.94652 5.03564 5.08343 5.13458 5.15377 5.20337 5.34976 5.42700 5.52577 5.62738 5.69475 5.96952 6.03295 6.09831 6.17836 6.37545 6.89206 7.47161 7.60169 8.96823 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.025496 B = 0.002857 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.956129 B = 9796.494468 C =10291.835237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.114 3.886 3 C -0.181 4.181 4 N -0.463 5.463 5 C 0.251 3.749 6 C -0.144 4.144 7 C -0.206 4.206 8 C -0.011 4.011 9 O -0.173 6.173 10 C -0.008 4.008 11 N -0.311 5.311 12 N -0.356 5.356 13 C 0.360 3.640 14 N -0.446 5.446 15 C 0.076 3.924 16 C -0.089 4.089 17 C 0.042 3.958 18 C -0.528 4.528 19 H 0.055 0.945 20 C 0.015 3.985 21 N -0.917 5.917 22 Si 0.952 3.048 23 H -0.280 1.280 24 H -0.284 1.284 25 H -0.267 1.267 26 C -0.096 4.096 27 C 0.086 3.914 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.048 0.952 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.071 0.929 35 H 0.156 0.844 36 H 0.252 0.748 37 H 0.246 0.754 38 H 0.019 0.981 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.074 0.926 42 H -0.010 1.010 43 H 0.261 0.739 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.647 21.069 8.586 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.013 3.987 3 C -0.238 4.238 4 N -0.158 5.158 5 C -0.015 4.015 6 C -0.148 4.148 7 C -0.226 4.226 8 C -0.077 4.077 9 O -0.067 6.067 10 C -0.079 4.079 11 N -0.152 5.152 12 N -0.201 5.201 13 C 0.003 3.997 14 N -0.171 5.171 15 C -0.051 4.051 16 C -0.127 4.127 17 C 0.023 3.977 18 C -0.566 4.566 19 H 0.073 0.927 20 C -0.184 4.184 21 N -0.557 5.557 22 Si 0.778 3.222 23 H -0.206 1.206 24 H -0.209 1.209 25 H -0.192 1.192 26 C -0.134 4.134 27 C -0.041 4.041 28 H 0.103 0.897 29 H 0.138 0.862 30 H 0.067 0.933 31 H 0.127 0.873 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.089 0.911 35 H 0.173 0.827 36 H 0.268 0.732 37 H 0.261 0.739 38 H 0.037 0.963 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.008 0.992 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.226 20.847 9.285 25.008 hybrid contribution 0.130 -1.459 -1.260 1.932 sum -10.096 19.388 8.025 23.286 Atomic orbital electron populations 1.22722 0.91449 1.03816 1.06232 1.22009 0.96778 0.95151 0.84757 1.22589 1.04324 0.92951 1.03896 1.46693 1.34782 1.26047 1.08258 1.21926 1.00099 0.99564 0.79882 1.18911 1.02599 0.95952 0.97356 1.22917 1.01422 1.01489 0.96736 1.24693 1.02139 0.93637 0.87219 1.83995 1.52894 1.47366 1.22461 1.25545 0.93393 0.91174 0.97776 1.74176 1.08583 1.05829 1.26564 1.74520 1.23203 1.22560 0.99774 1.22777 0.93579 0.91423 0.91903 1.58842 1.08375 1.33462 1.16409 1.22274 0.93519 0.93898 0.95395 1.21456 0.99369 0.98111 0.93792 1.18694 0.92693 0.92441 0.93840 1.21498 0.98411 1.30527 1.06185 0.92673 1.25699 0.95541 0.96192 1.00960 1.69986 1.10953 1.37361 1.37414 0.85643 0.78439 0.78617 0.79458 1.20632 1.20927 1.19180 1.21601 0.97995 0.99084 0.94677 1.21963 0.89865 0.94922 0.97316 0.89744 0.86188 0.93264 0.87322 0.91003 0.85625 0.91090 0.82655 0.73219 0.73855 0.96280 0.90171 0.93289 0.90774 0.99217 0.93028 0.91784 0.91627 0.90191 0.94893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.84 8.65 71.98 0.62 -2.21 16 2 C 0.11 2.31 3.01 44.99 0.14 2.44 16 3 C -0.18 -2.45 8.07 71.98 0.58 -1.87 16 4 N -0.46 -13.60 2.68 -494.14 -1.32 -14.92 16 5 C 0.25 7.76 7.34 136.26 1.00 8.76 16 6 C -0.14 -3.31 5.70 -18.98 -0.11 -3.41 16 7 C -0.21 -3.93 11.15 23.63 0.26 -3.67 16 8 C -0.01 -0.13 12.04 66.93 0.81 0.67 16 9 O -0.17 -2.38 10.55 0.87 0.01 -2.37 16 10 C -0.01 -0.13 7.75 67.31 0.52 0.39 16 11 N -0.31 -11.94 12.22 -50.80 -0.62 -12.56 16 12 N -0.36 -14.60 11.41 -57.89 -0.66 -15.26 16 13 C 0.36 13.22 6.92 260.03 1.80 15.02 16 14 N -0.45 -16.61 4.49 -706.00 -3.17 -19.77 16 15 C 0.08 2.94 5.16 86.32 0.45 3.39 16 16 C -0.09 -4.02 5.12 30.65 0.16 -3.86 16 17 C 0.04 2.06 2.16 -11.46 -0.02 2.04 16 18 C -0.53 -28.35 8.56 25.60 0.22 -28.13 16 19 H 0.06 2.90 7.74 -2.91 -0.02 2.88 16 20 C 0.01 0.79 5.31 84.66 0.45 1.24 16 21 N -0.92 -51.63 11.37 21.45 0.24 -51.38 16 22 Si 0.95 42.70 29.54 68.60 2.03 44.73 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 C -0.10 -3.96 5.32 30.65 0.16 -3.80 16 27 C 0.09 3.35 4.85 86.33 0.42 3.77 16 28 H 0.08 1.23 3.63 -2.39 -0.01 1.22 16 29 H 0.12 1.01 8.12 -2.39 -0.02 0.99 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.11 2.44 6.58 -2.39 -0.02 2.43 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.13 0.69 7.74 -2.38 -0.02 0.67 16 34 H 0.07 1.04 5.06 -2.39 -0.01 1.03 16 35 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.25 0.54 8.06 -2.91 -0.02 0.52 16 37 H 0.25 2.59 3.26 -2.91 -0.01 2.58 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 2.71 6.57 -2.39 -0.02 2.70 16 40 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.07 3.78 6.18 -2.38 -0.01 3.76 16 42 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 43 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 44 H 0.06 2.58 8.14 -2.39 -0.02 2.57 16 45 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 47 H 0.03 1.38 8.11 -2.39 -0.02 1.36 16 Total: -1.00 -71.30 363.19 4.95 -66.35 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.99 Total: 14.43 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 7.45 Total: -9.24 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -5.53 Total: -113.89 kcal Atomic # 8 Polarization: -2.38 SS G_CDS: 0.01 Total: -2.37 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -71.30 4.95 -66.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580993827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.703 kcal (2) G-P(sol) polarization free energy of solvation -71.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds